BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30650.1
Length=575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944923 jgi|Araly1|944923|scaffold_701152.1 388 2e-107
> Ahg944923 jgi|Araly1|944923|scaffold_701152.1
Length=276
Score = 388 bits (210), Expect = 2e-107
Identities = 242/257 (94%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 58 TCTTCTTCACTCACATCTCTGA-AAAAATGGCGAGCAACATGGAAGTTTTCTGCGAGATC 116
|||||||| || ||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 5 TCTTCTTC-TTCTCATCTCTAAGAAAAATGGCGAGCAACATGGAAGTTTTCTGTGAGATC 63
Query 117 TTAATCGCGATCCTTCTTCCACCTCTTGGAGTTTGTCTCAAACGTGGCTGTTGCACTGTA 176
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TTAATCGCTATCCTTCTTCCACCTCTTGGAGTTTGTCTCAAACGTGGCTGTTGCACTGTA 123
Query 177 GAGTTCTTGATTTGCTTGGTGCTGACAATCTTAGGATACATCCCAGGGATAATTTATGCA 236
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GAGTTCTTGATTTGCTTAGTGCTGACAATCTTAGGATACATCCCAGGGATAATTTATGCA 183
Query 237 CTATACGTGATCGTGTTTCAAAACCGTGAAGGCTCT-ACCGAACTTGGAGCTCCACTTAA 295
|| ||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 184 CTTTACGTGATCGTGTTTCAAAACCGTGAAGGCTCTCAC-GAACTCGGAGCACCACTCAA 242
Query 296 CTCAGCTTGATCTGTTT 312
||||||||||||| |||
Sbjct 243 CTCAGCTTGATCTCTTT 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21023729539
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5