BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30660.1
Length=496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944922 jgi|Araly1|944922|scaffold_701151.1 388 2e-107
> Ahg944922 jgi|Araly1|944922|scaffold_701151.1
Length=268
Score = 388 bits (210), Expect = 2e-107
Identities = 242/257 (94%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 80 tctcatctctctgaaaaaaTGCCGAGCAACTGTGAGATTCTGTGCGAGATCATTATCGCG 139
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3 TCTCATATCTCTGAAAAAATGCCGAGCAACTGTGAGATTCTCTGCGAGATCATTATCGCG 62
Query 140 ATCCTTCTTCCTCCTCTCGGAGTTTGCTTCAGGAAAGGATGCTGCACTGTGGAGTTTTTG 199
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 63 ATCCTTCTTCCTCCTCTCGGAGTTTGCCTCAGGAAAGGATGTTGCACTGTGGAGTTTTTG 122
Query 200 ATATGCCTGGTGTTGACGATCTTAGGCTATGTCCCGGGGATAATATATGCGATTTACGTG 259
|| |||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||
Sbjct 123 ATTTGCCTGGTATTGACTATCTTAGGCTATGTCCCTGGGATAATATATGCAATATACGTG 182
Query 260 ATTGTGTTTCAGCACCGTGAAGAGTACTTTGATGAATACAGACGCCC-CATCTACTCTGC 318
|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 183 ATTGTGTTTCAGAACCGTGAAGAGTACTTTGATGAATACAGACGCCCTC-TCTACTCTGC 241
Query 319 TTGAT-T-TCTGTTTCT 333
||||| | |||||||||
Sbjct 242 TTGATATCTCTGTTTCT 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18009438008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5