BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30662.1

Length=882
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328649 jgi|Araly1|328649|fgenesh1_pm.C_scaffold_7000876           464    4e-130


> Ahg328649 jgi|Araly1|328649|fgenesh1_pm.C_scaffold_7000876
Length=741

 Score =  464 bits (251),  Expect = 4e-130
 Identities = 314/343 (92%), Gaps = 9/343 (3%)
 Strand=Plus/Plus

Query  266  GACTTCACTGGCATTTTCTTGTTCATTGATTGTACTCCTATTGTTACTCTCTCAGCCTTT  325
            |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  408  GACTTCACTGGCTTTTTCTTGTTCATTGATTGTATTCCTATTGTTACTCTCTCAGCCTTT  467

Query  326  GCCAATTTCATCTGAAAATAAGGAGAGTGAACGAAGACTTGCACAACACGGTGACTCCAA  385
            || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  468  GCTAATTTCATCTGAAAATCAGGAGAGTGAACGAAGACTTGCACAACACGGTGACTCCAA  527

Query  386  TCCGTTGGATCATCATGACTCTCTTCGAGTTTTCATGAGGAAAGCTCGTTTtggtggtgt  445
            ||| ||| |||||||||||||||||||||||||||||||||||||||||   | |  || 
Sbjct  528  TCCATTGAATCATCATGACTCTCTTCGAGTTTTCATGAGGAAAGCTCGT---G-T--TG-  580

Query  446  tggtggtggtagtcgtggtggtggtCGTAGCCACCGTCGTGTCCCCAGTAGTGGTCATGG  505
             | ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  581  -G-TGGTGGTAGTCGTGGTGGTGGTCGTAGTCACCGTCGTGTCCCTAGTAGTGGTCATGG  638

Query  506  TGCGGGTGGATCATCCGCTACTAGTCGACCTTGTCTCTCGATGGCATTGCGCTACGGTTC  565
            ||| |||||||||||||||||||||||||||| ||||||||| |||||||  | ||||||
Sbjct  639  TGCCGGTGGATCATCCGCTACTAGTCGACCTTCTCTCTCGATCGCATTGCTTTTCGGTTC  698

Query  566  CACGGTCGCGAGCTCAATTCTGTTGATGTTCTTCGCCTTCTAA  608
            ||||||||| | |||||||||||| |  ||||| |||||||||
Sbjct  699  CACGGTCGCAAACTCAATTCTGTTAACATTCTTGGCCTTCTAA  741



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32671339869


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5