BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30680.1
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353746 jgi|Araly1|353746|fgenesh1_pg.C_scaffold_7000919 996 0.0
> Ahg353746 jgi|Araly1|353746|fgenesh1_pg.C_scaffold_7000919
Length=2238
Score = 996 bits (539), Expect = 0.0
Identities = 622/661 (94%), Gaps = 10/661 (2%)
Strand=Plus/Plus
Query 218 AGGGCAGTGGAGGCCTTCTGAACGATAGACCAAGTGCCCTTGTGCAAGGTAATGGTTCCC 277
|||| ||||| || ||| |||||| |||||||||||||||||| |||||||||||||||
Sbjct 1583 AGGGAAGTGGTGGTCTTATGAACGGTAGACCAAGTGCCCTTGTACAAGGTAATGGTTCCG 1642
Query 278 AACA-GCCTAAACCTGTTCCTTCCCCGACCAGACAAACTGTGGAGAAGCCAAAACCACAA 336
|| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1643 AA-ATGCCTAAACCTGTTCCTTCCCCGACCAGACCAACTGTGGAGAAGCCAAAGCCACAA 1701
Query 337 CCACAGCCACAGGAGGTGGCTCCTCCTACGA-CTACTAGCTTGAACACAGTAGAGCTCAG 395
||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||||
Sbjct 1702 CCACAGCCACAGGAGGTGGCTCCTCCTAC-AGCTACTAGCTTGAACACTGGAGAGCTCAG 1760
Query 396 TAGAAAGACCAACTCGCTTTTGGAGGAATATTTCAATGTCCGTCTATTGGATGAGGCATT 455
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 TAGAAAGACTAACTCGCTTTTGGAGGAATATTTCAATGTCCGTCTATTGGATGAGGCATT 1820
Query 456 ACAATGCATAGAAGAACTGAAAACCCCGTCTTACCATCCTGAGCTTGTCAAGGAAGCTAT 515
||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1821 ACAATGCGTAGAAGAACTGAAAACCCCGTCTTACCATCCCGAGCTCGTCAAGGAAGCTAT 1880
Query 516 CTCCCTCGGCTTGGAGAAGAACCCTCCTTGTGTTGAACCAGTGGCGAAGCTCTTGGAACA 575
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1881 CTCCCTCGGCTTGGAGAAGAACCCTCCATGTGTTGAACCAGTGGCGAAACTCTTGGAACA 1940
Query 576 TCTGGTCTCTAAGAATGTTCTAACTCCTAAAGACTTAAGG-AATGGTTGTCTGCTCTATG 634
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1941 TCTGGTCTCTAAGAATGTTCTAACTCCTAAAGACTT-AGGTAATGGTTGTCTGCTCTATG 1999
Query 635 GGTCTATGCTCGATGACATTGGGATCGATCTGCCAAAAGCGCCAAACAACTTTGGGGAGA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2000 GGTCTATGCTCGATGACATTGGGATCGATCTGCCAAAAGCGCCAAACAACTTTGGGGAGA 2059
Query 695 TCCTTGGGAGTTTGGTTATGGCCAAAGCATCGGATTCTGAGTTGGTGAAAGAGATTCTAA 754
|| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2060 TCATTGGTAGTTTGGTTATGGCCAAAGCATCGGATTTTGAGTTGGTGAAAGAGATTCTAA 2119
Query 755 TGAAAATGGGAG-ACGAATGGTTCAAGAAAGCAGTCTTGGAAGCTGTGATGAGG-AGTGT 812
||||||||| || |||| ||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 2120 TGAAAATGG-AGGACGAGTGGTTCAAGAAAGCAGTCTTGAAAGCTGTGAT-AGGGAGTGT 2177
Query 813 TAGTGAGTCTCTACTCACTACGGAAGCAGTAGAGGTTGAGGCTTGCCGTGGTTTGGTGTA 872
||||||||||||||| ||||| ||| || |||||||||||||||||| ||||||||||
Sbjct 2178 TAGTGAGTCTCTACTGGCTACGCAAGAAGCCGAGGTTGAGGCTTGCCGTAGTTTGGTGTA 2237
Query 873 G 873
|
Sbjct 2238 G 2238
Score = 222 bits (120), Expect = 3e-57
Identities = 132/138 (96%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 82 ATGCAGCAAGGTGACTCAATGCTGAGCTTGAGGCCTGGAGGTGGTCGTGGAGGAAGCAGA 141
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGCAAGGTGACTCAGTGTTGAGTTTGAGGCCTGGAGGTGGTCGTGGAGGAAGCAGA 60
Query 142 CGCTTTGCCCCACGCTTTACCTTATCTTCTTCCTCTGATCTTACCAATGGCGGAGACGCT 201
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 61 CTCTTTGCCCCACGCTTTACCTTATCTTCTTCCTCTGATCTTACCAATGGCGCAGATGCT 120
Query 202 CCTTCTTTTGCCGTTAAG 219
||||||||||||||||||
Sbjct 121 CCTTCTTTTGCCGTTAAG 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32328233616
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5