BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30710.1
Length=2925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491681 jgi|Araly1|491681|fgenesh2_kg.7__1114__AT4G30710.2 3927 0.0
> Ahg491681 jgi|Araly1|491681|fgenesh2_kg.7__1114__AT4G30710.2
Length=2703
Score = 3927 bits (2126), Expect = 0.0
Identities = 2348/2451 (96%), Gaps = 31/2451 (1%)
Strand=Plus/Plus
Query 389 CAATTCTCCAGCTTGGCTAATCAACTCCGATCACGTTCCGTATTCCCAAATTCGATCTCG 448
|||||||||||||||| ||||||| |||||||||||| | ||| ||||| ||||||||||
Sbjct 280 CAATTCTCCAGCTTGGTTAATCAATTCCGATCACGTTTCATATACCCAATTTCGATCTCG 339
Query 449 AAGGGGGACATAGAGAAGTCTTTCGCGAAGGAGAATCACGAGACTTTGATTACTTTTGGC 508
|| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 340 AA-GGGGAC--AGAGAAGTCTTTCGCG-AGGAGAATCACGAGACTTTGATTACTTTTGGC 395
Query 509 ACTCTTA-TGTTTTCTTACTGAATAAAGGGACTTCATTTACAGCAACTGGAGCTGTTTTT 567
||||||| |||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 396 ACTCTTAGGGTTTTCTTGCAGAATAAAGGGACTTCATTTACAGCAACTGGAGCTCTTTTT 455
Query 568 ATTGTTTACCTCCAAGCGCATAATTAAACGAGAGGCATGAAGAACTGCTGAATTCAATCA 627
|||||||| || ||| ||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 456 ATTGTTTAGCTTCAA-TGCAGAATTAGACGAGAGGCAT---GAACTGCTGAATTCAATCA 511
Query 628 ATGCAAGTTTGTTTCGTTAGCTTGAATGGATGTAGCAACAGATACTACAAGGCGGCGTCT 687
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 512 ATGCAAGTTTGTTTCTTTAGCTTGAATGGATGTAGCAACAGATACTACAAGGCAACGTCT 571
Query 688 TCTTCCATCCGACAAGAACAATGCAGTTGTTGCCACCCGCCGTCCTCGAACAATGGAGGT 747
|||||||||||| |||||||||||| ||| |||||| |||||||||||||||| ||||||
Sbjct 572 TCTTCCATCCGAGAAGAACAATGCACTTGCTGCCACTCGCCGTCCTCGAACAACGGAGGT 631
Query 748 CAGTTCAAGATACAGATCACCCACGCCTACCAAAAACGGGCGATGCCCTTCCCCAAGCGT 807
||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 632 CAGTTCAAGATACAGATCACCAACGCCAACCAAAACCGGGCGATGCCCTTCCCCAAGCGT 691
Query 808 CACAAGGCCAACAGTGTCTTCAAGCTCTCAATCTGTGGCTGCAAAAAGAGCAGTTTCAGC 867
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CACAAGGCCGACAGTGTCTTCAAGCTCTCAATCTGTGGCTGCAAAAAGAGCAGTTTCAGC 751
Query 868 AGAGAGGAAGCGTCCTTCAACACCACCATCTCCGACTAGTCCCTCCACGCCGATACGTGA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 AGAGAGGAAGCGTCCTTCAACACCACCATCTCCGACTAGTCCCTCCACGCCGATACGTGA 811
Query 928 CTTGTCTATAGACTTACCAGCTTCATCTAGGAGGCTATCTACTGGTCGTTTGCCTGAAAG 987
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 812 CTTGTCTATAGACTTACCAGCTTCATCTAGGAGGCTATCTACAGGTCGTTTACCTGAAAG 871
Query 988 CTTATGGCCTTCCACTATGAGAAGCCTCAGTGTTTCGTTTCAGTCTGATTCAGTCTCTGT 1047
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 872 CTTATGGCCTTCCACTATGAGAAGCCTCAGTGTTTCGTTTCAGTCGGATTCAGTCTCAGT 931
Query 1048 CCCTGTTAGTAAGAAGGAGAGACCGGTTAGTAGTTCTTCTGGTGATCGAACATTGAGACC 1107
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 932 GCCTGTTAGTAAGAAGGAGAAACCGGTTAGTAGTTCTTCTGTTGATCGAACATTGAGACC 991
Query 1108 TTCTTCGAATATAGCTCAAAAGCATAAGGCTGAAACGACCTCTGTATCAAGGAAACCTAC 1167
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 992 TTCTTCGAATATAGCTCAGAAGCATAAGGCTGAAACGACCTCTATATCAAGAAAACCTAC 1051
Query 1168 GCCAGAGAGGAAAAGAAGTCCATTGAAAGGGAAGAATAATGTGTCTGATCTTTCAGAGAA 1227
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1052 GCCAGAGAGGAAGGGAAGTCCATTGAAAGGGAAGAATAATGTATCTGATCTTTCAGAGAA 1111
Query 1228 TTCGAAACCTGTAGATGGTCCTCATAGTCGGTTAATAGAACAGCATCGGTGGCCTAGTAG 1287
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1112 TTCGAAACCTGTAGATGGTCCTCACAGTCGGTTGATAGAACAGCATCGGTGGCCTAGTAG 1171
Query 1288 AATTGGTGGAAAGATCACTTCGAATTCTTTAAACAGAAGCTTGGATCTTGGTGACAAGGC 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 AATTGGTGGAAAGATCACTTCGAATTCTTTAAACAGAAGCTTGGATCTTGGTGACAAGGC 1231
Query 1348 TTCAAGGGGTATACCAACTTCAGGGCCTGGAATGGGGCCGTCTCTTAGGAGAATGTCACT 1407
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1232 TTCAAGGGGTTTACCAACTTCAGGGCCTGGACTGGGGCCGTCTCTTAGGAGAATGTCACT 1291
Query 1408 TCCATTGTCCAGCAGTTCACGACCTTTGCATAAAACTTCTAGTAACACATCTAGTTATGG 1467
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 ACCATTGTCCAGCAGTTCAAGACCTTTGCATAAAACTTCTAGTAACACATCTAGTTATGG 1351
Query 1468 TGGCTTAGTGTCTCCAACAAAGTCGGAAGATAATAACATAGCTCGAACTTCTGGGGCTCA 1527
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 TGGATTAGTGTCTCCAACAAAGTCGGAAGATAATAACATAGCTCGAACTTCTGGGGCTCA 1411
Query 1528 AAGACTATTGTCTGCAGGTTCGTTGGATAGAGCAACATTAGCAACGGCTGTAGCTAGGTT 1587
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 AAGACTTTTGTCTGCAGGTTCGTTGGATAGAGCAACATTAGCAACGGCTGTAGCTAGGTT 1471
Query 1588 GCATCCATTGCCTGCTCCTGGATCTCGCCCTGCTTCACCAAGTAGAACATCGTTTTTGTC 1647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1472 GCATCCATTGCCTGCTCCTGGATCTCGCCCTGCTTCACCAAGTAGAACATCGTTTTCGTC 1531
Query 1648 TTCATCGTCTATTTCCCGAGGTATGAGTACTTCGAGAGGAGTGAGTCCATCAAGAGGACT 1707
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TTC---GTCTATTTCCCGAGGCATGAGTACTTCGAGAGGAGTGAGTCCATCAAGAGGACT 1588
Query 1708 AAGCCCTTCTAGAGGATTGAGTCCTACAAGAGGTTTAAGTCCTTCAAGAGGGTTAAGTCC 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 AAGCCCTTCTAGAGGATTGAGTCCTACAAGAGGTTTAAGTCCTTCAAGAGGGTTAAGTCC 1648
Query 1768 TTCGCGCGGCACAAATACATCCTGTTTTGCTAGACCATCAACTCCACCTTCAAGAGGGAT 1827
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 TTCGCGCGGCACAAATACTTCCTGTTTTGCTAGACCATCAACTCCACCTTCAAGAGGGAT 1708
Query 1828 AAGTCCTTCACGGATAAGACAAACCACCACTTCCACACAATCCAGTACCACAACTTCGGT 1887
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1709 AAGTCCTTCACGGATAAGACAAACCAGCACTTCCACACAATCCAGTACCACAACTTCAGT 1768
Query 1888 TCTCAGCTTCATCACGGATGTCAAGAAAGGCAAAAAAGCAAGCTATATCGAAGATGTTCA 1947
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 TCTCAGCTTCATCACGGACGTCAAGAAAGGCAAAAAAGCAAGCTATATCGAAGATGTTCA 1828
Query 1948 TCAACTGCGCTTGCTCCACAATAGATATTTACAGTGGCGATTTGCAATTGCACGAGCTGA 2007
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1829 TCAACTGCGCTTGCTCCACAATAGATATTTACAGTGGCGGTTTGCAATTGCACAAGCTGA 1888
Query 2008 ATCTGTAATGTATATTCAACGACTAACTTCCGAGGAAACACTGTTCAATGTGTGGCATGC 2067
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1889 ATCTGTAATGTATATTCAAAGACTAACTTCCGAGGAAACACTGTTCAATGTGTGGCATGC 1948
Query 2068 GATATCAGAACTACAGGATCATGTGACCAGGCAAAGGATTGGCCTACAACAGCTAAAGCT 2127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1949 GATATCAGAACTACAGGATCATGTGACCAGGCAAAGGATTGGCCTACAACAGCTAAAGCT 2008
Query 2128 AGAGATCAAGCTCAACTCATTATTAAACGATCAGATGGTGAGCCTTGAAGATTGGGCCAC 2187
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2009 AGAGATCAAACTCAACTCACTATTAAACGATCAGATGGTGAGCCTTGAAGATTGGGCCAC 2068
Query 2188 ACTTGAAAGAGATCATGTTAGTTCTTTAGTTGGAGCCATATCAGATTTAGAAGCAAACAC 2247
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 ACTTGAAAGAGACCATGTTAGTTCTTTAGTTGGAGCCATATCAGATTTAGAAGCAAACAC 2128
Query 2248 TCTTCGCCTTCCAGCTACTGGAGGAACAAAGGCGGACACAGAATCTTTGAAAGCAGCTAT 2307
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2129 TCTTCGCCTTCCAGCGACTGGAGGAACAAAGGCGGACACTGAATCTTTGAAAGCAGCTAT 2188
Query 2308 GTCCTCGGCCCTCGATGTAATGCAGGCTATGGGATCGTCCATTTGGTCTTTACTCTCAAA 2367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2189 GTCCTCGGCCCTCGATGTAATGCAGGCTATGGGATCGTCCATTTGGTCTTTACTCTCAAA 2248
Query 2368 GGTGGAGGAGATGAACATAATGGTAACAGAACTCGCTGTTGTAGTAACAAAAGAGAGTTC 2427
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2249 GGTGGAGGAGATGAACATAATGGTAACAGAACTCGCTGTTGTAGTTACAAAAGAGAGTTC 2308
Query 2428 TATGCAAGGAAAATGCGAAGATCTTCTGGCCTCAACTGCGATCATGCAGATAGAAGAGTG 2487
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2309 TATGCAAGGAAAATGCGAAGATCTTCTGGCCTCTACTGCGATCATGCAGATAGAAGAGTG 2368
Query 2488 TAGTCTCAGGACTCATCTGATACAAACTAGGCGAGAAGAAGGAGAAGACGCA--G-AGAC 2544
||| |||| ||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2369 TAGCCTCAAGACTCATCTGATACAAACTAGGCGAGAAGAAGGAGAAGACGCAAAGGAGAC 2428
Query 2545 TCCACCTCCATTGTTGCCATTAAGCAAGTTTCCATGGCCATAAATAACAAAAGCTTACAG 2604
||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2429 TCC---TCCATTGTTGCCATTAAGCAAGTTCCCATGGCCATAAATAACAAA-GCTTACAG 2484
Query 2605 TTCCCACACGCTCAACACTGATCACCTGTAAATTGCTCTTTGATGCCCCCACAtttctct 2664
||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||
Sbjct 2485 TTCCCACACGCTCAACACTGATCACCTGTAAATTGCTCTCTGATGCCTC-ACATTTCTCT 2543
Query 2665 tgtcgagatccttttttgatctttgcttgttgaagttttcttcttcttttttttGGTATA 2724
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2544 TGTCGAGATCCTTTTTTGATCTTTGCTTGTTGAAGTTTTCTTCTTCTTTTTTT-GGTATA 2602
Query 2725 AAAACATTAGCTTAGGAAAAAAGGAAGTGGAAGATCACGAGTTCGAAAGTCTTAGGATAC 2784
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2603 AAA-CATTAGCTTAGGAAAAAAGGAAGTGAAAGATCACGAGTTCGAAAGTCTTAGGATAC 2661
Query 2785 CAAAAAGGAAATTTATTTTGTTCACAAATCACATGTAAGCTCTGATGTGGG 2835
||||| |||||||||||| | |||| | |||||||||||||||||
Sbjct 2662 AAAAAAAGAAATTTATTTT-T-CACA--T-----GTAAGCTCTGATGTGGG 2703
Score = 244 bits (132), Expect = 2e-63
Identities = 154/164 (94%), Gaps = 4/164 (2%)
Strand=Plus/Plus
Query 189 tttATTATTCGGATTAGAGAGAAAAATAAAAAGACCCTTTT-AATATCAAAATTAGGTGG 247
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 119 TTTATTATTCGGATTAGAGAGAAAAATAAAAAGACTCTTTTTAATATCAAAATTAGGTGG 178
Query 248 CGCGAAAATAACGCCctctctctctcactctttcctttttttctctctctttgatctcct 307
|||||||||||||||||||||||||| |||||| || | | ||||||||||||||||||
Sbjct 179 CGCGAAAATAACGCCCTCTCTCTCTCTCTCTTT--TTCTCT-CTCTCTCTTTGATCTCCT 235
Query 308 cGAACCCATCATCTTAAATCGCCCGATCAATTCTATCTCCGGCG 351
|||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 236 CGAACCCATCCTCTTAAATCGCCCGATCAATTCTATCACCGGCG 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110423620255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5