BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30720.1
Length=2488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491679 jgi|Araly1|491679|fgenesh2_kg.7__1112__AT4G30720.1 3611 0.0
> Ahg491679 jgi|Araly1|491679|fgenesh2_kg.7__1112__AT4G30720.1
Length=2345
Score = 3611 bits (1955), Expect = 0.0
Identities = 2104/2176 (97%), Gaps = 9/2176 (0%)
Strand=Plus/Plus
Query 21 CACAGAGACGAGCTTTTTAGTTTGAGCTCTCTCTCACTATGTCTCTCTCGCAAACGAATT 80
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CACAGAGACAAGCTTTTTAGTTTGAG----CTCTCACTATGTCTCTCTCGCAAACGAATT 56
Query 81 TCCTCAGTTCTTCATTACTCTCATCGAGCCATGACCTGCGAATTCCTTATTCTAGAGCGG 140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 57 TCCTCAGTTCTTCATTTCTCTCATCGAGCCATGACCTGCGAATTCCTTATTCTAGAGAGG 116
Query 141 TACTTTCTTATCCCCGTATCCAAACACACCGGATTCTCTGTGCTGCGAAGCGAACCGGGA 200
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 117 TACTCTCTTATCCCCGTATCCAAACACACCGGATTCTCTGTGCTGCCAAGCGAACCGGGA 176
Query 201 AGCGGAGATATCCTTCTGAGAGGAGGAAGCTGAGGACAGAGCAGAAGGAAGCTGTGGCTA 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 AGCGGAGATATCCTTCTGAGAGGAGGAAGCTGAGGACAGAGCAGAAGGAAGCTGTGGCCA 236
Query 261 AGGTTAAGAACAAGCTTGAAGGAGTTTGGCGTCTCTCTAAGCTCGGAGTTCCTGTTGGAG 320
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 237 AGGTTAAGAACAAGCTCGAAGGAGTATGGCGTCTCTCTAAGCTCGGAGTTCCTGTTGGAG 296
Query 321 ATGACCCTGGAAAGGACTTTCTCGGGATTTCAGAAGGTTTGCTTCAAGCCATCGCTAAAG 380
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 297 ATGACCCTGGAAAGGATTTTCTCGGAATTTCCGAAGGTTTGCTTCAAGCCATCGCTAAAG 356
Query 381 TTATCGAGTTTCCGGTTGCTTCAATGCTGCCAGAAGAAGCATTTTCAGTGATTAGGAAAT 440
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTATTGAGTTTCCGGTTGCTTCAATGCTGCCAGAAGAAGCATTTTCAGTGATTAGGAAAT 416
Query 441 CTTTTGACGCTAGGAAGATTCTGAAAGAAGCCAAGTTTGTTTACACTGTGGATTTGGATG 500
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 417 CTTTTGACGCTAGGAAGATTCTGAAAGAAGCCAAGTTTGTGTATACTGTGGATTTGGATG 476
Query 501 TGAAGACGCTCCTTGAGTTAGAGCCTCGTGCTCATGATTTCATTTTCCGGTTAGAGCCTA 560
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGAAGACGCTTCTTGAGTTGGAGCCTCGTGCTCATGATTTCATTTTCCGGTTAGAGCCTG 536
Query 561 AGATTGGGCTTATTGAACATGTGCCTACCGAGAAGAGTGTTTCAGGGGACTTGATCAGTG 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGATTGGGCTTATTGAACATGTGCCTACCGAGAAGAGTGTTTCAGGGGACTTGATCAGTG 596
Query 621 TGGTGAATGACTGTAAAAGGATCAACAGTGAGACAGCATCCGGAGAATATGAACCTCAGA 680
||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 597 TGGTGAACGACTGTAAAAGGATCAACAGTGAGACATCATCCGGAGAACATGAACCTCAGA 656
Query 681 TTATCAATGGCTCTGGAGATCCACACCATCATGGAGGAGGACGAAGCAAACCGAAAATTG 740
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
Sbjct 657 TTATCAATGGCTCTGGAGATCCACACCAGC---GTGGAGGACGAAGCAAACCGAAAATCG 713
Query 741 CAGTTGTTGGTGGTGGTCCATCTGGTTTGTTTGCTGCTCTTGTACTTGCAGAGTTCGGTG 800
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 714 CAGTTGTTGGTGGTGGTCCATCTGGTTTGTTTGCAGCTCTTGTTCTTGCAGAGTTCGGTG 773
Query 801 CAGATGTGACATTGATTGAAAGAGGGCAAGCAGTAGAAGAAAGGGGACGTGATATAGGCG 860
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 774 CAGATGTGACATTGATAGAAAGAGGGCAAGCAGTAGAAGAAAGGGGACGTGATATCGGCG 833
Query 861 CTTTGGTAGTTCGCAAGATTTTGGATATGGAGAGTAATTTCTGCTTTGGCGAGGGTGGTG 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTTTGGTAGTTCGCAAGATTTTGGATATGGAGAGTAATTTCTGCTTTGGCGAGGGTGGTG 893
Query 921 CAGGTACTTGGAGTGATGGAAAGCTTGTTACTCGAATAGGAAAGAATAGTGCCACCGTTC 980
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CAGGTACTTGGAGTGATGGAAAGCTTGTTACTCGAATAGGAAAGAATAGTGCCACCGTTT 953
Query 981 TAGCGGTGTTGAAAACGTTGGTTCGCTTTGGGGCTCCTGATAATATATTGGTCAACGGAA 1040
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 954 TAGCGGTGTTGAAAACGTTGGTTCGCTTTGGTGCTCCTGATAATATATTGGTCAACGGAA 1013
Query 1041 AGCCTCATCTAGGAACAGATAAGCTAGTTCCATTACTCCGTAATTTCAGACATTATCTTC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AGCCTCATCTAGGAACAGATAAGCTAGTTCCATTACTCCGTAATTTCAGACATTATCTTC 1073
Query 1101 AAAGTGCGGGAGTGACTATCAAGTTTGGAACTCGGGTAGATGATCTTCTGGTAGAGGATT 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 AAAGTGCGGGAGTGACTATCAAGTTTGGAACTCGGGTAGATGATCTTCTGGTAGAGGATT 1133
Query 1161 CTCGTGTTGTTGGAGTCAGGGTTTCGGATTCAACAAACCAATTGCAGACTACCTCCCAGA 1220
||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||
Sbjct 1134 CTCGTGTTGTTGGAGTCAGGGTTTCGGATTCAACAGACCAATTGCAGAGTACTTCCCAGA 1193
Query 1221 ATTTAAAGGTTGATGCAGTTGTTCTTGCAGTTGGTCATTCAGCACGTGACACATATGAGA 1280
|||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1194 ATTTAAAGTTTGATGCAGTTGTTCTTGCGGTTGGTCACTCAGCACGTGACACATATGAGA 1253
Query 1281 TGCTTCATTCTCGTAATGTCGAATTGATTCCAAAAGATTTTGCTGTTGGTTTGCGTATTG 1340
||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 1254 TGCTTTATTCTCGTAATGTTGAATTGACCCCAAAAGATTTTGCTGTTGGTTTGCGCATTG 1313
Query 1341 AGCATCCTCAGGAGCTAATTAACAGTATACAGTACTCGGATTTGGCTAA-TGAAGTTCTT 1399
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1314 AGCATCCTCAGGAGCTAATTAACAGTATACAGTACTCGGATTTGGC-AAGTGAAGTTCTT 1372
Query 1400 AAAGGGCGAGGTAAAGTACCAGTGGCGGATTATAAGGTTGTTCAGTATGTGAATGATAAG 1459
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AAAGGACGAGGTAAAGTACCAGTGGCGGATTATAAGGTTGTTCAGTATGTGAATGATAAG 1432
Query 1460 ACCGAGGATCTCTCGCAGTCTTCATCGAAACGCAGTTGCTACTCCTTCTGCATGTGTCCT 1519
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1433 GCCGAGGATCTCTCGCAGTCTTCATCAAAACGTAGTTGCTACTCCTTCTGCATGTGTCCT 1492
Query 1520 GGTGGTCAGGTTGTTCTCACCAGCACAAACCCAACCGAACTCTGCATCAATGGCATGTCA 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 GGTGGTCAGGTTGTTCTCACCAGCACAAACCCAACCGAACTCTGCATCAATGGCATGTCA 1552
Query 1580 TTTTCTCGCCGTTCATCCAAATGGGCCAATGCTGCACTCGTCGTTACAGTCTCAGCAAAA 1639
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1553 TTTTCTCGCCGTTCTTCCAAATGGGCCAATGCTGCACTCGTCGTCACAGTATCAGCAAAA 1612
Query 1640 GATTTTGATGTTCTCAATCTTAAAGGACCCTTAGCTGGAATTGAGTTTCAGAGAGAATTT 1699
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1613 GACTTTGATGTTCTCAATCTTAAAGGACCCTTAGCTGGAATTGAGTTTCAGAGAGAGTTT 1672
Query 1700 GAAAGAAGAGCAGCCATAATGGGTGGTGGCGATTTTACAGTTCCTGTACAAAGGGTTACT 1759
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GAAAGAAGAGCGGCTATAATGGGTGGTGGCGATTTTACAGTTCCTGTACAAAGGGTTACT 1732
Query 1760 GATTTTCTGCAAAACAAGCTATCTGAAACACCTTTACCTCCATCAAGCTATAGATTAGGA 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 GATTTTCTGCAAAACAAGCTATCTGAAACACCTTTACCTCCATCAAGCTATAGATTAGGA 1792
Query 1820 GTGAAGTCTGCAAATCTGCATGAACTGTTTCCTGCTCATATCACAGAGGCTCTGCGAGAG 1879
||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||
Sbjct 1793 GTGAAGTCTGCAAATCTGCATGAACTGTTTCCTACTCATATTACAGAGTCTCTGCGACAG 1852
Query 1880 TCTATCTCTATGTTTGAAAAGGAGTTACCGGGATTCATCTCAGAGGAAGCACTCCTCCAC 1939
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1853 TCTATCTCTATGTTTGAAAAAGAGTTGCCAGGATTCATCTCAGAGGAAGCACTCCTCCAT 1912
Query 1940 GGCGTAGAGACAAGAACAAGCTCCCCTGTTCGGATACCTCGAAGCAATGAGACGTACGAG 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 GGCGTAGAGACAAGAACAAGCTCCCCTGTTCGGATACCTCGAAGCAATGAGACGTACGAG 1972
Query 2000 AGTACGAGCTTAAAAGGTCTATACCCAGTTGGTGAAGGAGCTGGTTATGCTGGTGGAATT 2059
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1973 AGCACGAGCTTAAAAGGTCTATACCCAGTTGGTGAAGGAGCTGGTTATGCTGGTGGCATT 2032
Query 2060 GTAAGTGCTGCAGTGGATGGTATGTTTTCGGGTTTTGCTGTTGCGAAAAGCTTTGATCTC 2119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2033 GTAAGTGCTGCAGTGGATGGTATGTTTTCGGGTTTTGCTGTTGCGAAAAGCTTTGATCTC 2092
Query 2120 TTTGATGGAACCATAGAGTCAGTTATTGGAAAGGCTCAAGGTGCTGGACTTGTAAAGTAC 2179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2093 TTTGATGGAACCATAGAGTCAGTTATTGGAAAGGCTCAAGGTGCTGGACTTGTGAAGTAC 2152
Query 2180 tgatgatgctgatgat 2195
|||||||| |||||||
Sbjct 2153 TGATGATGATGATGAT 2168
Score = 198 bits (107), Expect = 1e-49
Identities = 162/186 (87%), Gaps = 13/186 (7%)
Strand=Plus/Plus
Query 2250 TTGTCGAGGTAAAAGAACATCAAGGGGGACTG----CTCCAAAATCCAGTTTTGTTGTAC 2305
|||| |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||
Sbjct 2168 TTGTTGAGGTAAAAGAACATCAATGGGGACTGCTTCCTCCAGAATTCAGTTTTGTTGTAC 2227
Query 2306 CATAGCTCAAGGACTTATACAG-AAAAGGCCCAAATCAGAAGCGGGAAGGAATCGTCATC 2364
|| |||| ||| || ||||||| ||||||| | |||||||||| | |||| | ||||
Sbjct 2228 CAAAGCTTAAGAACCTATACAGAAAAAGGCTC-AATCAGAAGC--G--GGAA-C--CATC 2279
Query 2365 AGCAGCCAGAAGAGAATTTTGCCTTAGTTATGTAACTAACCCAAACAGTAGTACTGAAGA 2424
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2280 AGCAGCCAGAAGAGAATTTTGCCTTAGTTATGTAACTAACCCAAACAGTAGTAGTTAAGA 2339
Query 2425 AAGTAA 2430
||||||
Sbjct 2340 AAGTAA 2345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93778183190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5