BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30750.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944914 jgi|Araly1|944914|scaffold_701143.1 518 4e-146
> Ahg944914 jgi|Araly1|944914|scaffold_701143.1
Length=712
Score = 518 bits (280), Expect = 4e-146
Identities = 533/648 (82%), Gaps = 45/648 (7%)
Strand=Plus/Plus
Query 74 TACGTCGAAACCATGTCCAGTTTCTTCCCTTTGCCGCCAGCCATCGGGAAAT-C-CAC-T 130
||||||||||||||||||| ||| ||||||||| ||| |||| || || || | ||| |
Sbjct 9 TACGTCGAAACCATGTCCACTTTGGTCCCTTTGCTGCCCGCCAGCGAGAGATCCACACAT 68
Query 131 GGATGTGGAGTGCGTGATGAATCACAATCATTAGTTGTATGGGCCATTGAGGACTACTCA 190
| || |||| ||| ||| || | || ||||||| ||||||| ||| ||||||||| |
Sbjct 69 GCATATGGA--GCG-CATG-ATGA-AA-CATTAGTCGTATGGGACATAGAGGACTACAAA 122
Query 191 ATCCCTGAAAGTATCGATCC-TGATATGATCAACT-TGAAAATCGAAACAGCTATTGTCA 248
||||||||||| |||||||| || | ||||||||| | ||||||| || ||||||||||
Sbjct 123 ATCCCTGAAAGCATCGATCCTTG-TTTGATCAACTAT-AAAATCGCAAGAGCTATTGTC- 179
Query 249 AAAAAT-TTAATTTAAGGTCGTCGGCGGTAGTGACAACCTGGATTTTCGGTTCTGCTGAG 307
|| | | || ||||| | | || |||| | | ||||||||||||||||||||||
Sbjct 180 AAGCGTCCTCATATAAGG--AT-GTTGGAAGTGTCCATCTGGATTTTCGGTTCTGCTGAG 236
Query 308 AATGCATGGTTGGCTAAATC-CAAAGTTAAACTTTGGGAATCCGAGTTTAGA-GTCTCTC 365
|||||||||||| || |||| ||| | ||||||||||||||||||||| || |||| ||
Sbjct 237 AATGCATGGTTGACTGAATCGCAA-GACAAACTTTGGGAATCCGAGTTT-GAAGTCTGTC 294
Query 366 TCCACAAAgggggggATAAACGTGCCAGATTAAACATGATGT-TAGCAGACGTCATTTAT 424
|||||||||||| ||| |||| |||||||||||||||| | |||| || || |||||
Sbjct 295 TCCACAAAGGGG---ATAGACGTACCAGATTAAACATGAT-TCTAGCGGAAGTAATTTAC 350
Query 425 TATGTATGGAACT-GGAAGGCTCCAACAAATTTGGC-GGTACTCACAGAAAACAAGGAGG 482
||||||||| || ||| | ||||| ||||||| | ||||||| | ||||||||||||
Sbjct 351 CATGTATGGAGCTTGGATGA-TCCAATAAATTTG-CTGGTACTCTCGGAAAACAAGGAGA 408
Query 483 AGATGGAACAAGACCCCAAATTTTTCAGATTTCGTCAAGCTTTAGAAAATAAAGGTTTCT 542
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 409 AGATGGAACAAGACCCCAAATTTTGCAGATTTCGTCAAGCTTTAGAAAACAAAGGTTTCT 468
Query 543 TTGTTGCCGTAGAACACCCTGAGACACTCATCAACCAAGAAACTGCCGTTGAAGACCCGC 602
|||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 469 TTGTTGCCTTAGCACACCCTGAGACACTCATTAACCAAGAAACTGCCGTTGAAGAGCCGC 528
Query 603 CAGATGACT-CCCCAATACCTTACTA-C---CCA-A-GTGACAACCCTCAAAAGCTAGCG 655
||||| | |||||||||||||||| | ||| | |||||||| | | ||||||||
Sbjct 529 CAGATTT-TACCCCAATACCTTACTATCAAACCACAAGTGACAACACGCTTAAGCTAGC- 586
Query 656 TT-CTGGTAC-AAAGAAGATTCTGAAGCTTACAGAGCTAAAT-ATAAA 700
|| |||| || ||||||||| ||| |||| |||| |||| | |||||
Sbjct 587 TTACTGG-ACCAAAGAAGATGATGATGCTTTCAGATCTAA-TCATAAA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5