BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30770.1
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944913 jgi|Araly1|944913|scaffold_701142.1 822 0.0
> Ahg944913 jgi|Araly1|944913|scaffold_701142.1
Length=516
Score = 822 bits (445), Expect = 0.0
Identities = 493/516 (96%), Gaps = 3/516 (1%)
Strand=Plus/Plus
Query 242 TCCTTCCTTAG---AATCATAATGCCTGTGCCAGATCCACGGGCGGGGCAGGCGTTCATC 298
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTTCCTTAGAATAATAATAATGCCTGTGCCAGATCCACGGGCGGGGCAGGCGTTCATC 60
Query 299 TGTCTCATTACTTTATTTCTTTTCCTATCAATCGCGGTTGGAGGCGGTTGTCTAATTGCA 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTCTCATTACATTATTTCTTTTCCTATCAATCGCGGTTGGAGGCGGTTGTCTAATTGCA 120
Query 359 TATACAATTCTTCCTTACCCTCCAGTTTGGCTCTCCTACCTCGGCATTGTCTTTGTTTGT 418
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACACAATCCTTCCTTACCCTCCAGTTTGGCTCTCCTACCTCGGCATTGTCTTTGTTTGT 180
Query 419 CTCCCTTGGTTCTTTTGGATCCTAACATTTGCCTACCGCATTGTTTCACGTACTTTTGGA 478
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 181 CTCCCTTGGTTCTTTTGGATCCTAACCTTTGCATACCGCATTGTTTCACGCACTTTTGGA 240
Query 479 TTTAGGATGGTTGTTGGATCCGGTGGTAATAATAACAACGCGAATGGAGAAACCATGACG 538
||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||| ||
Sbjct 241 TTTAGGATGGTCGTTGGATCCGGTGGTAACAATAACAACGCGAGTGGAGAATCCATGCCG 300
Query 539 CGTGATCTTGACCCTCCTGAGCAATCTTTAGAGTCTCCTGATGATGATGATCCAGAGCCA 598
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 301 CGTGATCTTGACCCTCCTGAGCAATCTTTAGAATCTCCCGATGATGATGATCCAGAGACG 360
Query 599 ATAGCTCACCCACAAGGCCAAGTTCTAGTGTCGATTGAAGGGAATCAATCGAAGAAACGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATAGCTCACCCACAAGGCCAAGTTCTAGTGTCGATTGAAGGGAATCAATCGAAGAAACGA 420
Query 659 ATGTCAACCTCCAGTAATTCTACTATCGCTTCGCATGAAAGTGAGATGCCACTAGCCATT 718
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 ATGTCAACCTCCAGCAATTCTACTATCGGTTCGCATGAAAGTGAGATGCCACTAGCCATT 480
Query 719 TCTATGGCCTCATGATCATATATGTCTTGTTGACAC 754
||||||| ||||||||||||||||| ||||||||||
Sbjct 481 TCTATGGGCTCATGATCATATATGTTTTGTTGACAC 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014360819
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5