BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30780.1
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491676 jgi|Araly1|491676|fgenesh2_kg.7__1109__AT4G30780.1 3334 0.0
Ahg481267 jgi|Araly1|481267|fgenesh2_kg.4__327__AT2G24100.1 490 2e-137
> Ahg491676 jgi|Araly1|491676|fgenesh2_kg.7__1109__AT4G30780.1
Length=2111
Score = 3334 bits (1805), Expect = 0.0
Identities = 1943/2008 (97%), Gaps = 16/2008 (1%)
Strand=Plus/Plus
Query 165 GGTTTGTTTTTTCGGGGGATGGTGGAAATGAGGAAATCTGGAGGTTTAAGAC---CGGAG 221
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 114 GGTTTTTTTTTTCTGGGGATGGTGGAAATGAGGAAATCTGGAGGTTTAAGACGAACGGAG 173
Query 222 TCTGAATCGGCGGCCAGGTGCCGAGATGAGCTACCGGTGAAATTGGAGATTGCTGAAGAT 281
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 174 TCTGAATTGGCGGCCAAGTGCCGAGATGAGCTACCGGTGAAATTGGAGATTGCTGAGGAT 233
Query 282 GATTTAGAAGAAGAGCATGGTCCTCTCAACAAACGATCTAGGTTATGGAGTCCTGGGACA 341
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 234 GATTTAGAAGAAGAGCATGCTCCTCTCACCAAACGATCTAGGTTATGGAGTCCTGAGACA 293
Query 342 AGCTCATCGACAATGGCACCAGCTAAGTATAACCCGCTTGATGAGCCGAGTCCTCTTGGA 401
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AGTTCATCGACAATGGCACCAGCTAAGTATAACCCGCTTGATGAGCCGAGTCCTCTTGGG 353
Query 402 TTGAGTCTTAAGAAGAGTCCATCTTTGTTGGAGTTGATTCAGATGAAGATAACGCATTGT 461
|||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 354 TTGAATCTTAGGAAGAGTCCATCCTTGTTGGAGTTGATTCAGATGACGATAACGCATTGT 413
Query 462 GGTGATCCTAAAGCAGCTGAAACGTTGAAAGCTGGTGCACTTGGCTCTGGTCTTAAGAGA 521
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 414 GGTGACCCTAAAGCAGCTGAAACGCTGAAAGCTGGTGCACTTGGCTCTGGTCTTAAGAAA 473
Query 522 GAAAGTAAAACTATTGCTGCTGCTGCATCAGTTGGACCGACTTTGGCGCCAGGAAGTATT 581
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 474 GAAAGTAAAAGTATTGCTGCTGCTGCATCACTTGGACCGACTTTGGCGCCAGGAAGTATT 533
Query 582 GAGAAGCTGAAAGCTTCTAACTTTCCTGCTTCGCTTTTGAAGATCGGGCAGTGGGAGTAT 641
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 534 GAGAAGCTGAAAGCTTCCAACTTTCCTGCTTCGCTTTTGAAGATCGGACAGTGGGAGTAT 593
Query 642 AAATCGAGGTATGAAGGTGATTTGGTGGCAAAGTGTTACTTTGCTAAACACAAACTTGTT 701
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 AAATCGAGGTATGAAGGTGATTTGGTGGCAAAGTGTTACTTTGCAAAACACAAACTTGTT 653
Query 702 TGGGAAGTGTTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAGTGGTCAGATATTATG 761
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 654 TGGGAAGTATTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAATGGTCAGATATTATG 713
Query 762 GCTTTGAAGGCAAACTGTCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTTGCTAGA 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GCTTTGAAGGCAAACTGTCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTTGCTAGA 773
Query 822 CAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAGCATACCTTGTGGCAGGCG 881
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 774 CAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAACATACTTTGTGGCAGGCG 833
Query 882 ACATCAGATTTCACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAATGTGCT 941
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACATCAGATTTTACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAATGTGCT 893
Query 942 CAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCTGTTCCAT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCTGTTCCAT 953
Query 1002 CTAAGCCGACAGCCGGAGATAGCTATTGACTCTCCCTACTTTGATGCACGGCAATCTATT 1061
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 CTAAGCCGACAGCCGGAGATAGCTATTGACTCTCCCTACTTTGATGCGCGGCAATCTATT 1013
Query 1062 TTTGAGGATCCAAGTGAATCAAAAGGCCATCCTTTTGGGAATTTGAATCTTAGTACAGGT 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1014 TTTGAGGATCCAAGTGAATCAAAAGGCCATCCTTTTGGGAATTTGAATCTTAGCACAGGT 1073
Query 1122 CCTTCG-ATCTCTGGGACTCAGAATTTAGCATCTCCTGTTGGGGCTCAGTCATCATCTGA 1180
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CCTTCGAAT-TCTGGGACTCAGAATTTAGCATCTCCTGTTGGGGCTCAGTCATCATCTGA 1132
Query 1181 GCATATGTATCTGTCTCATGAAGCACCATCACCCAGCTCAGTGATAGATGCTCGTGCAAA 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GCATATGTATCTGTCTCATGAAGCACCATCACCCAGCTCAGTGATAGATGCTCGTGCAAA 1192
Query 1241 TGAAGGAATTGGGGGTTCTGAAGCAGTCAATTCAAGAAACAGAACAGATTGTGGTCAGAT 1300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGAAGGAATTGGAGGTTCTGAAGCAGTCAATTCAAGAAACAGAACAGATTGTGGTCAGAT 1252
Query 1301 CGAAGCACCTGGAATACACCAATCTATGTCACTGAGTGATTTCCTTGCGGTTCTCTGTGA 1360
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1253 CGAAGCACCTGGACTACACCAATCTATGTCACTGAGTGATTTCCTTGCAGTTCTCTGTGA 1312
Query 1361 TACAAAAAACACAACGGATTTGAATCTGGCTGACGACGTAGATGGACTACACCAATCTAT 1420
| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1313 TTCAAAAAACACAACGGATTTGAATCTGGCTGAAGACGTAGCTGGACTACACCAATCTAT 1372
Query 1421 GTCAGTTAGTGATTTCGTTGCATATTTATCTGATTCAAGAAACATAACTGATTCAGATCA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GTCAGTTAGTGATTTCGTTGCATATTTATCTGATTCAAGAAACATAACTGATTCAGATCA 1432
Query 1481 GATAAAAGTACCTGGACTACACCAATCTATGTCAGTGAGCGATTTCGTTGGACTTCTCTC 1540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1433 GATAAAAGTACCTGGACTACACCAATCTATGTCGGTGAGCGATTTCGTTGGACTTCTCTC 1492
Query 1541 TGATTCTGCTGGTGGAAGTCATCCGGAACATATGGAGAAATTTGAGATCATGAAACAGCA 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGATTCTGCTGGTGGAAGTCATCCGGAACATATGGAGAAATTTGAGATCATGAAACAGCA 1552
Query 1601 GTTGCTAAGTGATAATATCCAGTTCGAGGCACCAGATGAGAAGTCTCTCATGCCAAGGGT 1660
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1553 GTTGCTAAGTGATAATATCCAGTTCGACGCACCAGATGAGAAGTCTCTCATGCCAAGGGT 1612
Query 1661 TAACTCTTTATTCAACCTCTTGTACAAGGATCCCAACGTCGCTGCAAACTCACAGCTCAA 1720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1613 TAACTCTTTATTCAACCTCTTGTACAAGGATCCCAATGTCGCTGCAAACTCACAGCTCAA 1672
Query 1721 TACCGAAATGTCGGTTGGATTGAAGTCTGAACCCAAGGGAATTGTTTCTGacaacaacaa 1780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 TACCGAAATGTCGGTTGGATTGAAGTCTGAACCCAAGGGAATTGTTTCTGACAACAACAA 1732
Query 1781 caacaacaacaacaacaacaGAGTTCTTGATACAGCTTCTAGCAGCAAACCACAGGGTAT 1840
||||||| ||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct 1733 CAACAACGACA---------GAGTTCTTGATCCAGCTTCTAGCAGCAAACCACAAGGTAT 1783
Query 1841 GTTAAGGAAAGACTCATTCAGCGATTTGCTATTACACCTCCCCCGGATCACATCCTTGCC 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 GTTAAGGAAAGACTCATTCAGCGATTTGCTATTACACCTCCCCCGGATCACATCCTTGCC 1843
Query 1901 AAAGTTCTTGTCCAACATTTCAGAAGAAGATGGTGATGCATATAATAGATAATTTATAGA 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 AAAGTTCTTGTCCAACATTTCAGAAGAAGATGGTGATGCATATAATAGATAATTTATAGA 1903
Query 1961 TA-CCGCCTTTCTTTTCTGGATTTGGCAAGTATAGGAACCTGGACTAGTAGCTTTTCTGt 2019
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1904 TAACCGCCTTTCTTTTCTGGATGTGGCAAGTATAGGAACCTGGACTAGTAGCTTTTCTGT 1963
Query 2020 tttttttttC-TTGTAAATCAAAATTATCACTTGGTAACTACAACCCCCACAGGGATTTG 2078
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1964 TTTTTTTTTTATTGTAAATCAAAATTATCTCTTGGTAACTACAACCCCCACAGGGATTTT 2023
Query 2079 AAGAAACATGTTTTGATGATTAATTTCTGTATATTATTCCCAATATAAACCAAAGTTGGC 2138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2024 AAGAAACATGTTTTGATGATTAATTTCTGTATATTATTCCCAATATAAACCAAAGTTTGC 2083
Query 2139 AGAGGCAAAAGATTCCATTATTTATCCT 2166
|||||| ||||||| ||||||||||||
Sbjct 2084 AGAGGCGTAAGATTCTATTATTTATCCT 2111
Score = 135 bits (73), Expect = 1e-30
Identities = 75/76 (99%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 7 AGAGAGAGATCCCGTAAATGTTTTATACTCTGATTTCTAGGGTTTGCTTTTGATTCTCTT 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGAGATCCCGTAAATGTTTTATACTCTGATTTCTAGGGTTTGCTTTTGATTCTCTT 60
Query 67 TCGCGTTCCAGATAAA 82
||| ||||||||||||
Sbjct 61 TCGTGTTCCAGATAAA 76
> Ahg481267 jgi|Araly1|481267|fgenesh2_kg.4__327__AT2G24100.1
Length=1607
Score = 490 bits (265), Expect = 2e-137
Identities = 423/499 (85%), Gaps = 12/499 (2%)
Strand=Plus/Plus
Query 580 TTGAGAAGCTGAAAGCTTCTAACTTTCCTGCTTCGCTT-TTGAAGATCGGGCAGTGGGAG 638
|||||||||| ||||||||||||||||||||| || || || | ||| || || ||||||
Sbjct 325 TTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACGGTTCTT-AGGATTGGTCAATGGGAG 383
Query 639 TATAAATCGAGGTATGAAGGTGATTTGGTGGC-AAAGTGTTACTTTGCTAAA-CACAAAC 696
||||| || ||||||||||||||||||||||| ||| ||||| ||||| ||| || ||||
Sbjct 384 TATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAA-TGTTATTTTGC-AAAGCATAAAC 441
Query 697 TTGTTTGGGAAGTGTTGGAACAAGGTCTTAAGAGTAAAATCGAGATCCAGTGGTCAGATA 756
|||| ||||||||||||||||||||||||||||| || || ||||| |||||||| ||||
Sbjct 442 TTGTATGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATTGAGATTCAGTGGTCTGATA 501
Query 757 TTATGGCTTTGAAGGCAAACTG-TCCTGAAGACGGACCTGGAACTTTGACTCTCGTGCTT 815
|||||||||||||||| || | || ||||| | ||||||||| ||||| |||||||
Sbjct 502 TTATGGCTTTGAAGGCTAATTTATCG-GAAGATGAACCTGGAACGCTGACTATCGTGCTG 560
Query 816 GCTAGACAGCCCTTATTTTTCCGGGAAACAAACCCACAGCCTAGAAAGCATACCTTGTGG 875
||||| | ||| || ||||| ||||||| || || ||||||||||| ||||| ||||||
Sbjct 561 GCTAGGCGGCCGTTGTTTTTTAGGGAAACTAATCCGCAGCCTAGAAAACATACTTTGTGG 620
Query 876 CAGGCGACATCAGATTTCACTGATGGCCAAGCCAGCATGAACAGGCAGCATTTTCTGCAA 935
||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 621 CAGGCGACATCGGATTTTACTGATGGTCAAGCCAGCATGAACAGGCAACATTTTCTGCAG 680
Query 936 TGTGCTCAAGGGATAATGAACAAACATTTTGAAAAGCTCGTTCAATGTGATCATCGTCT- 994
||||| | ||||||| |||| |||||||| || ||||| || |||||||||||||| ||
Sbjct 681 TGTGCCCCAGGGATATTGAATAAACATTTCGAGAAGCTTGTCCAATGTGATCATCG-CTT 739
Query 995 GTTCCATCTAAGCCGACAGCCGGAGATAGCTATTGAC-TCTCCCTACTTTGATGCACGGC 1053
|||| ||||||||||||||| |||||| | ||| | || || | ||||||| |||| |
Sbjct 740 GTTCTGTCTAAGCCGACAGCCAGAGATAAAT-TTGGCATCACCGTTCTTTGATTCACGAC 798
Query 1054 AATCTATTTTTGAGGATCC 1072
|||| || |||||||||||
Sbjct 799 AATCAATATTTGAGGATCC 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81513124300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5