BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30800.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491674 jgi|Araly1|491674|fgenesh2_kg.7__1107__AT4G30800.1 924 0.0
Ahg932420 jgi|Araly1|932420|scaffold_400408.1 564 4e-160
> Ahg491674 jgi|Araly1|491674|fgenesh2_kg.7__1107__AT4G30800.1
Length=723
Score = 924 bits (500), Expect = 0.0
Identities = 566/597 (95%), Gaps = 7/597 (1%)
Strand=Plus/Plus
Query 42 CGTCAGAAGATTTCAAGGTTTAGGGTTTCTGCAATTCAACCATGGCAGAGCAGACGGAGA 101
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 27 CGTCAGGAGATTTCAAGGTTTAGGGTTTCTGCAATTCAACCATGGCGGAGCAGACGGAGA 86
Query 102 AGGCGTTTCTTAAGCAACCAAAAGTTTTCTTAAGCTCGAAGAAATCTGGTAAGGGAAAGA 161
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 87 AGGCGTTTCTTAAGCAACCAAAAGTTTTCTTAAGCTCGAAGAAATCTGGTAAGGAAAAGA 146
Query 162 GGCCTGGTAAAGGAGGTAATCGTTTCTGGAAGAACATTGGCCTTGGTTTCAAAACTCCAA 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 147 GGCCTGGTAAAGGAGGTAATCGTTTCTGGAAGAACATTGGCCTTGGTTTCAAAACTCCTA 206
Query 222 GAGAGGCTATTGAAGGAACATACATTGACCAGAAATGTCCCTTTACTGGTACGGTTTCAA 281
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 207 GAGAGGCTATTGAAGGAGCATACATTGACAAGAAATGTCCCTTTACTGGTACGGTTTCAA 266
Query 282 TCAGGGGTCGCATCTTGTCTGGAACTTGTCACAGTGCAAAGATGCAGAGGACGATCATTG 341
|||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 267 TCAGAGGCCGCATCTTGTCAGGCACTTGTCACAGTGCAAAGATGCAGAGGACGATCATTG 326
Query 342 TTCGTAGGGACTATCTTCATTTTGTGAAGAAGTATCGAAGATATGAGAAAAGACACTCAA 401
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 327 TTCGTAGGGACTATCTTCACTTTGTGAAGAAGTATCAAAGATATGAGAAAAGACACTCAA 386
Query 402 ACATTCCTGCTCATGTTTCCCCGTGCTTCCGTGTCAAAGAAGGAGATCGTGTTACCATTG 461
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 387 ACATTCCTGCTCATGTTTCCCCGTGCTTCCGTGTCAAAGAAGGAGATCATGTTACCATTG 446
Query 462 GGCAATGCAGGCCATTGTCAAAGACGGTGAGGTTCAATGTCCTGAAGGTCATTCCGGCTG 521
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 447 GGCAATGCAGGCCACTGTCAAAGACGGTGAGGTTCAATGTCTTGAAGGTCATTCCGGCTG 506
Query 522 GAAGCTCTTCTATCGGGAAAAAAGCATTCACTGGAATGTAAAAGAGATTCAGATTTGTTG 581
|||||||||| || ||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 507 GAAGCTCTTCCATTGGGAAGAAAGCATTCACTGGAATGTAAATGAGATTCAGATCTGTTG 566
Query 582 -AAAA-GGTGCGAACTAGTATTCTAAGAGTTTAGAATTTTTCTAGC-AGAGTTATTG 635
|||| ||||| | ||| | | ||||| | |||||||||||||| | ||||||||||
Sbjct 567 GAAAAAGGTGCTAGCTA-T-T-CTAAGGGCTTAGAATTTTTCTA-CTAGAGTTATTG 619
Score = 93.5 bits (50), Expect = 2e-18
Identities = 59/63 (94%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 656 TGATCAAAGGAAACCAGA-TTT-TCTGTTTCATTTAGTGATTCAAGTATCAAGATATGTC 713
||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||
Sbjct 618 TGATCAAAGGAAACCGGATTTTCTCTGTTTCATTTAGTGATTCAAGTATCAAGATAAGTC 677
Query 714 TAT 716
|||
Sbjct 678 TAT 680
> Ahg932420 jgi|Araly1|932420|scaffold_400408.1
Length=521
Score = 564 bits (305), Expect = 4e-160
Identities = 429/489 (88%), Gaps = 8/489 (2%)
Strand=Plus/Plus
Query 77 TCAACCATGGCAGAGCAGACGGAGAAGGCGTTTCTT-AAGCAACCAAAAGTTTTCTTAAG 135
||||| ||||| |||||||||||||| ||| ||||| ||||||||||| || ||||| ||
Sbjct 15 TCAACAATGGCGGAGCAGACGGAGAAAGCG-TTCTTGAAGCAACCAAAGGTCTTCTTGAG 73
Query 136 CTCGAAGAAATCTGGTAAGGGAAAGAGGCCTGGTAAAGGAGGTAATCGTTTCTGGAAGAA 195
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 74 CTCGAAGAAATCTGGTAAAGGAAAGAGACCTGGAAAAGGAGGTAATCGTTTCTGGAAGAA 133
Query 196 CATTGGCCTTGGTTTCAAAACTCCAAGAGAGGCTATTGAAGGAACATACATTGACCAGAA 255
|||||| ||||||||||| ||||| ||||| |||| |||||| ||||||||||| ||||
Sbjct 134 CATTGGTCTTGGTTTCAAGACTCCCAGAGAAGCTACTGAAGGTGCATACATTGACAAGAA 193
Query 256 ATGTCCCTTTACTGGTACGGTTTCAATCAGGGGTCGCATCTT-GTCTGGAACTTGTCACA 314
|||||| |||||||| |||||||| || || ||||| ||||| | | || ||||||||||
Sbjct 194 ATGTCCGTTTACTGGGACGGTTTCGATTAGAGGTCGTATCTTAG-CAGGTACTTGTCACA 252
Query 315 GTGC-AAAGATGCAGAGGACGATCATTGTTCGTAGGGACTATCTTCATTTTGTGAAGAAG 373
|||| ||| ||||||||||| ||||||||||| ||| |||||||||||||||| ||||||
Sbjct 253 GTGCGAAA-ATGCAGAGGACTATCATTGTTCGGAGGAACTATCTTCATTTTGTTAAGAAG 311
Query 374 TATC-GAAGATATGAGAAAAGACACTCAAACATTCCTGCTCATGTTTCCCCGTGCTTCCG 432
|||| || | ||||||||||| || || |||||||| |||||||| || ||||| |||||
Sbjct 312 TATCAGAGG-TATGAGAAAAGGCATTCGAACATTCCCGCTCATGTCTCACCGTGTTTCCG 370
Query 433 TGTCAAAGAAGGAGATCGTGTTACCATTGGGCAATGCAGGCCATTGTCAAAGACGGTGAG 492
||||||||||||||||| ||| | ||| ||||||||||| || |||||||||||||||||
Sbjct 371 TGTCAAAGAAGGAGATCATGTGATCATCGGGCAATGCAGACCGTTGTCAAAGACGGTGAG 430
Query 493 GTTCAATGTCCTGAAGGTCATTCCGGCTGGAAGCTCTTCTATCGGGAAAAAAGCATTCAC 552
||| || ||||| ||||||||||| ||||| || ||| |||| ||||||||||||||| |
Sbjct 431 GTTTAACGTCCTAAAGGTCATTCCAGCTGGGAGTTCTGCTATAGGGAAAAAAGCATTCTC 490
Query 553 TGGAATGTA 561
|||||||||
Sbjct 491 TGGAATGTA 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5