BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30810.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491673 jgi|Araly1|491673|fgenesh2_kg.7__1106__AT4G30810.1 2527 0.0
Ahg482550 jgi|Araly1|482550|fgenesh2_kg.4__1610__AT2G35780.1 121 2e-26
> Ahg491673 jgi|Araly1|491673|fgenesh2_kg.7__1106__AT4G30810.1
Length=1608
Score = 2527 bits (1368), Expect = 0.0
Identities = 1478/1533 (96%), Gaps = 0/1533 (0%)
Strand=Plus/Plus
Query 22 CAATGGCCAAAACCAGAGGGTCTTGTTGTCTCGTCAACGCTCTAATCGCTATAGCTTTTT 81
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1 CAATGGCAAAAACCAGAGGGTCTTGTTGTCTCGTCAACGCTCTCATCGCTATTGCTTTTT 60
Query 82 TGGCGACAGCCCATTTGTGTGAAGCTGGCTTGTCTCAGAAAGAACAGGACAAGGTCTCGA 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGCGACAGCCCATTTGTGTGAAGCTGGCTTGTCTCAGAAAGAACAGGACAAGGTCTCGA 120
Query 142 AATTGCCTGGTCAGAATTTTAATGTTAGTTTTGCTCACTACTCTGGGTTTGTTGCTACTA 201
|||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||
Sbjct 121 AATTGCCTGGTCAGGATTTCAATGTTAGCTTTGCTCACTACTCTGGGTTTGTTACTACTA 180
Query 202 ATGAGCAATTGGGAAGAGCTCTCTTTTACTGGTTATTTGAAGCCGTTGAAGATGCTAAGT 261
||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 181 ATGAGGAATTGGGAAGAGCTCTCTTTTACTGGCTCTTTGAAGCCGTCGAAGATGCTAAGT 240
Query 262 CTAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCAGGATGTTCATCTGTTGCATATGGTG 321
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CTAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCAGGATGTTCATCTGTTGCATTTGGTG 300
Query 322 AAGCAGAAGAGATAGGACCATTTCACATTAAGGCAGATGGGAAGACTCTTTACCTTAATC 381
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGCAGAAGAGATAGGGCCATTTCACATTAAGGCAGATGGGAAGACTCTTTACCTTAATC 360
Query 382 AATATTCTTGGAACCAAGCTGCAAATATTTTGTTCCTTGATGCACCTGTTGGAGTTGGTT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATATTCTTGGAACCAAGCTGCAAATATTTTGTTCCTTGATGCACCTGTTGGAGTTGGTT 420
Query 442 ATTCATACTCAAACACCTCGTCTGATTTGAAGAGCAATGGTGATAAAAGAACTGCCGAAG 501
|||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 ATTCTTACTCAAACACCTCTTCTGATTTGAAGACCAATGGTGATAAAAGAACTGCCGAAG 480
Query 502 ATTCACTGAAATTTCTGCTGAAATGGGTTGAGCGGTTTCCGGAATACAAAGGAAGGGACT 561
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTCACTGAAATTTCTACTGAAATGGGTTGAGCGGTTTCCGGAATACAAAGGAAGGGACT 540
Query 562 TTTATATAGTAGGGGAGAGCTATGCAGGACATTACATTCCTCAGCTGAGTGAAGCCATTG 621
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 TTTATATAGTAGGGGAGAGCTATGCAGGACATTACATTCCTCAGTTGAGTGAAGCCATTG 600
Query 622 TAAAACATAACCAAGGTTCTGACAAAAACAGTATAAATCTGAAGGGTTACATGGTAGGAA 681
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 TAAGACATAACCAAGGTTCTGACAAAAACAGTATTAATCTGAAGGGTTACATGGTAGGAA 660
Query 682 ATGGGCTGATGGACGATTTCCATGACAGGCTTGGTCTTTTCCAATATATTTGGTCGTTGG 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGGGCTGATGGACGATTTCCATGACAGGCTTGGTCTTTTCCAATATATTTGGTCGTTGG 720
Query 742 GTTTTATATCTGACCAAACATACAGCTTACTGCAACTTCAATGCGGTTTCGAATCGTTTA 801
||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 721 GTTTTATCTCTGACCAAACATACAGCTTACTGCAACTCCAATGTGGTTTTGAATCGTTTA 780
Query 802 TTCACTCCTCCAAACAGTGTAACAAGATTCTGGAGATAGCGGACAAAGAAATAGGTAACA 861
||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 781 TTCACTCCTCCAAACCGTGTAATAAGATTTTGGAGATAGCGGACAAAGAAATCGGTAACA 840
Query 862 TAGACCAATACAGTGTCTTCACCCCAGCTTGTGTTGCCAATGCTTCCCAGTCAAATATGT 921
|||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 841 TAGATCAATACAGTGTCTTCACCCCAGCCTGCGTTGCAAATGCTTCCCAGTCAAATATGT 900
Query 922 TGCTAAAGAAAAGACCTATGACTAGCCGCGTGAGCGAACAGTATGATCCTTGTACGGAGA 981
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGCTAAAGAAAAGACCAATGACTAGCCGCGTGAGCGAACAGTATGATCCTTGTACGGAGA 960
Query 982 AACACACTACAGTTTATTTCAATCTTCCAGAGGTTCAAAAAGCCCTCCATGTCCCACCAG 1041
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 961 AACACACTACAGTTTATTTCAATCTTCCAGAGGTTCAAAAAGCCCTCCACGTCCCAGCAG 1020
Query 1042 GACTTGCACCATCAAAATGGGATACTTGCAGTGATGTCGTGAGTGAACACTGGAATGACT 1101
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1021 GACTTGCACCATCCAAATGGGATACTTGCAGTGATGTCGTGAATGAACACTGGAATGACT 1080
Query 1102 CTCCTTCCTCGGTTCTAAACATTTACCACGAGCTTATAGCTGCTGGGCTTCGTATCTGGG 1161
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTCCTTCTTCGGTTCTAAACATTTACCACGAGCTTATAGCTGCTGGGCTTCGTATCTGGG 1140
Query 1162 TTTTCAGTGGGGACGCAGATGCCGTTGTACCAGTCACATCAACCCGGTACAGTATCGATG 1221
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTTTCAGTGGGGACGCAGATGCTGTTGTACCAGTCACATCAACCCGGTACAGTATCGATG 1200
Query 1222 CACTAAACCTTCGTCCTTTGAGTGCCTATGGTCCTTGGTACTTAGATGGACAGGTGGGAG 1281
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CACTAAACCTACGTCCTTTGAGTGCCTATGGTCCTTGGTACTTAGATGGACAGGTGGGAG 1260
Query 1282 GGTGGAGTCAGCAGTATGCTGGTCTGAACTTTGTGACAGTGAGAGGTGCAGGCCATGAAG 1341
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTGGAGTCAGCAGTATGCTGGTCTGAACTTTGTGACAGTGAGAGGTGCAGGCCATGAAG 1320
Query 1342 TTCCTTTGCACAGACCGAAGCAAGCTCTTGCGCTCTTCAAGGCTTTTATATCTGGAACTC 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTCCTTTGCACAGACCGAAGCAAGCTCTTGCGCTCTTCAAGGCTTTTATATCTGGAACTC 1380
Query 1402 CATTGTCCACACATGAGAACAGCATCAGCCGCGACATGTCTGAACTCGTTAGTGACTCAT 1461
| |||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 1381 CGTTGTCCACACCTGAGAACAACATCAGCCGCGACATGTCTGAACTCATTACTGACTCAT 1440
Query 1462 AATGAGTTCTGATTTGATGTAATGTGTGATTTGGATTCTCAATCAAAAACTTTCCACATA 1521
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1441 AATGAGTTCTGATTTGATGTAATGTGTAATTTGGATTCTCAATCAAAAACTTTCCACAGA 1500
Query 1522 GGCCGTTGAAATAAGAAGAGGGAAAGAGAATAA 1554
|| | || || |||||||| ||||||||||||
Sbjct 1501 GGGCACTGTAAGAAGAAGAGAGAAAGAGAATAA 1533
Score = 106 bits (57), Expect = 6e-22
Identities = 70/76 (92%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 1583 CTTCTTCTTCTTCTGGTTGTTTGTTTGTTTGGAT-AAACATTTGCTGCTTGGAATCTAAT 1641
|||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct 1534 CTTCTTCTTCTTCTGGTTGTTTGTTTGTTTGG-TGAAACATTTGATGTTTGGAATCTAAT 1592
Query 1642 AAAAGAAGTTTCTACC 1657
|||| |||||| ||||
Sbjct 1593 AAAATAAGTTTGTACC 1608
> Ahg482550 jgi|Araly1|482550|fgenesh2_kg.4__1610__AT2G35780.1
Length=1417
Score = 121 bits (65), Expect = 2e-26
Identities = 265/359 (74%), Gaps = 24/359 (7%)
Strand=Plus/Plus
Query 259 AGTCTAAGCCTCTTGTTCTCTGGCTCAATGGAGGACCAGGATGTTCATCTGTTGCATATG 318
|||||||||||||||||||||||||||| || || || || ||||| || || || || |
Sbjct 215 AGTCTAAGCCTCTTGTTCTCTGGCTCAACGGTGGTCCTGGTTGTTCCTCCGTAGCTTACG 274
Query 319 GTGAAGCAGAAGAGATAGGACCATTTCACATT-AAGGCAGATGGGAAGACTCTTTACCTT 377
| | || ||||| || ||||| ||| | | | || | ||||| || ||||||||||
Sbjct 275 GCGCCGCTGAAGAAATCGGACCTTTT-AGAATCAATCCTGATGGCAAAACTCTTTACCAC 333
Query 378 AATCAATATTCTTGGAACCAAGCTG-CAAATATTT-TGTTCCTTGA-TGCACCTGTTGGA 434
|||| || ||||||||| || || | ||| || |||| ||||| | | || | |||
Sbjct 334 AATCCTTACTCTTGGAACAAAT-TGGCGAAT-TTGCTGTTTCTTGAAT-CTCCAGCTGGT 390
Query 435 GTTGGTTAT-TCATACTCAAACACCTCGTCTGATTTGAAGA--GCAATGGTGATAAAAGA 491
||||||| | || || || || ||| | || |||||| | | || || || || |||
Sbjct 391 GTTGGTT-TCTCGTATTCGAATACCACTTCCGATTTGTACACTGCC--GGAGACAAGAGA 447
Query 492 ACTGCCGAAGATTC--ACTGAAATTTCT-GCTGAAATGGGTTGAGCGGTTTCCGGAATAC 548
||||| |||||| | | || ||||| | |||||||| ||||| ||||||| |||||
Sbjct 448 ACTGCTGAAGATGCGTA-TGTG-TTTCTTG-TGAAATGGTTTGAGAGGTTTCCTCAATAC 504
Query 549 AAAGGA-AGGGACTTTTATATAG-TAGGGGAGAGCTATGCAGGACATTACATTCCTCAG 605
|| | | || || || || || | | || || ||||||||||| ||||| ||||||||
Sbjct 505 AA-GCACAGAGAGTTCTACATTGCT-GGAGAAAGCTATGCAGGTCATTATGTTCCTCAG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5