BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30820.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491672 jgi|Araly1|491672|fgenesh2_kg.7__1105__AT4G30820.3 859 0.0
> Ahg491672 jgi|Araly1|491672|fgenesh2_kg.7__1105__AT4G30820.3
Length=749
Score = 859 bits (465), Expect = 0.0
Identities = 585/641 (91%), Gaps = 15/641 (2%)
Strand=Plus/Plus
Query 158 GGTAGAGGAAAGGACAAGAATCCCAGGCAGAAGCAACCATGGTGATGGTGTCTAATTCTA 217
||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 109 GGTAGAGGAGAGGACAAGAAGCCCAGGCAGCAGCAACCATGGTGATGGTGTCTAATTCTA 168
Query 218 CCCATCAAAATAAGGAAATACATGTCAGAAGGAGAATCTCTGAGATATACAATAGACGGG 277
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CCCATCACAACAAGGAAATACATGTCAGAAGGAGAATCTCTGAGATATACAATAGACGGG 228
Query 278 AAGAGGAGTTTCCATCACTTAAAGACTACAATGACTACTTGGAAGAAGTGGAGTGCATGG 337
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 AAGAGGATTTTCCATCCCTTAAAGACTACAATGACTACTTGGAAGAAGTGGAGTGCATGG 288
Query 338 TATTCGACTTGATAGATGGAATCAATGTCGAGGCGATTGAGCAGAAGATTAAGAGATATT 397
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 289 TATTCGACTTGATAGATGGAATCAATGTTGAGGCGATTGAGGAGAAGATTAAGAGATATT 348
Query 398 CTAAGGAGAATGCTGAACAGATAATGATTAATAGAGCTCGTAAGGCAGAAGAATTGACTG 457
|| ||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||
Sbjct 349 CTCAGGAGAATGCTGAACAGATCATGATTAATCGAGCTCGCAAGGTAGAAGAATTGACTG 408
Query 458 CAGCCTTGGCAGCTTGCAAGGCCAAACCCCCACAGACAGATGCTGACACGTCGTCGAACC 517
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 409 CAGCATTGGCAGCTTGCAAGGCCCAACCCCCACAGACAGATGCTGACACGTCGTCGAACC 468
Query 518 ATGGGGTCACGGCTGGAACTACATATGGTCAGGCTTCACGACCAACGGGAATGGGCCCAC 577
||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 469 ATGGGGTTACGGCTGGAACTACATACGGTCAGGCTCCACGACCAACGGGAATGGGCCCAC 528
Query 578 AACCTGTACCTATAGTAGGTGGAGCAGAGCGTCAACATTACGCTATGGAAGACGAAGCGA 637
||||||||||||||||||| || |||||||||| ||| ||| |||||||||| |||||||
Sbjct 529 AACCTGTACCTATAGTAGGAGGGGCAGAGCGTCGACAATACTCTATGGAAGAAGAAGCGA 588
Query 638 CGAGGAGGATG---AAAGCAGAGAGAGCT----GG-----AGGATTTTCTTTAGAGATAA 685
|| || | | ||||||||||||||| || ||||||||| |||||||| |
Sbjct 589 AGAAGAAGCTCCTCAAAGCAGAGAGAGCTCCATGGGCTGGAGGATTTTCCTTAGAGATTA 648
Query 686 GCAAGAGGAGGGCTTTGGAAGAAGCATTTGCAAGCATTTGGGTTTGATTTCTCA--AGCG 743
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 649 GCAAGAGGAGGGCTTTGGAAGAAGCATTTGCAAGCATTTGGGTTTGATTCCTCTTGAGAG 708
Query 744 ATATTAGTTTTGTCCCTT-ATGATAGTGACTAGGAGGTCTT 783
||||||||||| ||| || | | |||||| ||||||||||
Sbjct 709 ATATTAGTTTTATCCTTTTAAAACAGTGACGAGGAGGTCTT 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5