BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30840.1
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491668 jgi|Araly1|491668|fgenesh2_kg.7__1101__AT4G30840.1 1784 0.0
> Ahg491668 jgi|Araly1|491668|fgenesh2_kg.7__1101__AT4G30840.1
Length=1274
Score = 1784 bits (966), Expect = 0.0
Identities = 1068/1118 (96%), Gaps = 3/1118 (0%)
Strand=Plus/Plus
Query 1 TAAAACCCTAGAAAACCTCTGGAGCTATGGAGATGATGCAGGATTCGTTCCAAGTCCATA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TAAAACCCTAGAAAACCTCTGGAGCTATGGAGATGATGCAGGATTCGTTCCAGGTCCATA 60
Query 61 GGATTCCACAATCGAAGTATGTCGATGGAGTTAGATGGCTTCCACAAGCTTCTGCTTTGA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 61 GGATTCCACAATCGAAGTATGTCGATGGAGTTAGATGGCTTCCACAAGCTTCGGCTCTGA 120
Query 121 ATCGTTTCTTCGCAACAGCGTCCTATGACGCGGATTGTGATTCTTCATCAATCGAGATCC 180
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ATCGTTTCTTCGCAACAGCGTTCTATGACCCGGATTGTGATTCTTCATCAATCGAGATCC 180
Query 181 AATCGCTCGACCCAAACCCTAGAGGGAATCACAACACGAACCCGTTAATCGAGTCGTTAT 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 181 AATCGCTCGACCCAAACCCTAGAGGGAATCAGAACACGAACCCGTTAATCGAGTCTTTAT 240
Query 241 CTTCATGGACTTCACCTTCTCGCGTTTCGTCTCTAGAAGTCGCGGGAAACGGCGGTGGTG 300
||||||||||||||||||||||||||||||| || |||||| | |||||||||||||| |
Sbjct 241 CTTCATGGACTTCACCTTCTCGCGTTTCGTCACTGGAAGTCTCCGGAAACGGCGGTGGCG 300
Query 301 GCGGTTCATTCAAACCAATGGTTTCAGCAGCTACGTCTTCTGGTTCTCTTCACGTTCTGA 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGGTTCATTCAAACCTATGGTTTCAGCAGCTACGTCTTCTGGTTCTCTTCACGTTCTGA 360
Query 361 TGATTGATTTGGTGGAAGGAGCTGCGATTGAAGAGTTTTACGCGGCGGAAGGGGAGAGGT 420
|| ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 361 TGGTTGATTTGGTGGAAGGAGCTGAGATTGAAGAGGTTTACGTGGCGGAAGGGGAGAGGT 420
Query 421 TTCATGTGGGACGCGTGGAAGGTGTGGATTGGAGAGAGGGAGGAGAATGTGTTACTGTTG 480
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 TCCATGTAGGACGCGTGGAAGGTGTGGATTGGAGAGAGGGAGGAGAATGTGTGACTGTTG 480
Query 481 GTGAAGATGGGAGAGTGAATGTAGTGAAGATTGTGAATGGTGAAGGTTTAAGGTATAGAA 540
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 GGGAAGATGGGAGAGTGAATGTAGTGAAGATTGTGAATGGTGAAGGTTTAAGATATAGAA 540
Query 541 AGGTCTTTGATGGGAATGGATTGGTGGCTTATAGAGCTGTGAAATGGGCTTCTCCGACTG 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 AGGTCTTTGATGGGAATGGATTGGTGGCTTATAGAGCTGTGAAATGGGCGTCTCCGACTG 600
Query 601 AGTTTGTTACTGGAGGATATGGTTTTGGTTTGCAATTGTGGGATCAGAGGAAGTCTGGTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTTTGTTACTGGAGGATATGGTTTTGGTTTGCAATTGTGGGATCAGAGGAAGTCTGGTG 660
Query 661 AAGCTGTTTCACAACTCAAAGGGAACTGGTTTCAAGGCAAAACTTCTGCAATTGTCCACT 720
||||||| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 661 AAGCTGTCTCACAGCTCAAGGGGAATTGGTTTCAAGGCAAAACTTCTGCTATTGTCCACT 720
Query 721 CCATTGACATTCATCCATCTCGGAAGCACACTTGCATTGCAGGAGGTTCTTCAGGTACTG 780
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 CCATTGACATTCATCCATCTCGGAAGCACACTTGCATTGCGGGAGGTTCTTCAGGTACTG 780
Query 781 TATTTGCTTGGGATCTTCGGTGGCCACAGCAACCCATTGTTCTTTCTGGGGTTGGAGCAA 840
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 781 TATTTGCTTGGGATCTTCGATGGCCACAGCAACCCATCGTTCTTTCTGGTGTTGGAGCAA 840
Query 841 GTGAGAATATAAACAATCCTCTGTCTGAAAGTGAGGTATGGGAAGTTCAGTATGACTCAT 900
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 841 GTGAGAATATAAACAATCCTCTGTCTGAAAGCGAGGTATGGGAAGTTCAATATGACTCGT 900
Query 901 ACACAAAATCCAACG---TCTCATCCTCAAGGATTCTCCCTGTTATGACCTGCTCTGAAG 957
|||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 901 ACACAAAATCCAACAACATCTCTTCATCAAGGATTCTCCCTGTTATGACCTGCTCTGAAG 960
Query 958 ATGGAATCCTTGGTATCATAGAACAAGGGGAAGAACCAATCGAGCTTCTGGCTGAACCTT 1017
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATGGAATCCTTGGTGTCATCGAACAAGGGGAAGAACCAATCGAGCTTCTGGCTGAACCTT 1020
Query 1018 GTGCCATTAACAGTTTTGACATCGACAGGCAAAATCCACAGGATGTGATATGTAGCTTGG 1077
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |
Sbjct 1021 GTGCCATTAACAGTTTTGACATCGACAGACAAAATCCACAGGATGTGATCTGTAGTTTAG 1080
Query 1078 AGTGGGAATCAATAGCAGTTTTCTCAAGGCCTTAGTAT 1115
||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1081 AGTGGGAATCAATTGCAGTTTTCTCGAGGCCGTAGTAT 1118
Score = 167 bits (90), Expect = 2e-40
Identities = 103/109 (94%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 1145 TTTCTTCTGCGAGCTACAACGAAGAAATTGAGGAAGGTAGTGATAGATGATGAGAGACAA 1204
||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1118 TTTCTTCTGTGAGCAACAATGAAGAAATTGAGGAAGGTGGTGATAGATGATGAGAGACAA 1177
Query 1205 GTTTAAGGAAGAGGGTG-TGGAATGTGTTTATAAGTTTCATTATAACAA 1252
|||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1178 GTTTAAGGAAGAGGATGATGGAATGTGTTTATAAGTTTCATTATAACAA 1226
Score = 86.1 bits (46), Expect = 6e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1275 AAACAGAGTTTTGTATTCATCTTAAAGTTAGTGTGATCTTGAAGATTTG 1323
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1226 AAACAGAGTTTTGTATTCATCTTAAAGTTAGTGTGATCTTGAAAATTTG 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5