BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30850.1
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491666 jgi|Araly1|491666|fgenesh2_kg.7__1099__AT4G30850.2 1977 0.0
Ahg481271 jgi|Araly1|481271|fgenesh2_kg.4__331__AT2G24150.1 459 3e-128
> Ahg491666 jgi|Araly1|491666|fgenesh2_kg.7__1099__AT4G30850.2
Length=1518
Score = 1977 bits (1070), Expect = 0.0
Identities = 1274/1367 (93%), Gaps = 35/1367 (3%)
Strand=Plus/Plus
Query 1 AGCATACCACGAAGATCGaaaaaaaaCAAATCAGATTCTCAAATACTGAAAATAAAAAGA 60
||| |||||||||||||| |||||||||||||||||||| ||||| || || | |
Sbjct 1 AGCGTACCACGAAGATCGGAAAAAAACAAATCAGATTCTGAAATATTG---AT----A-A 52
Query 61 AGAAGAGAGAAATCTACGGTGGTGGGTGATTCGCCGGAGTTCAATTTCGTAGCTAGATTT 120
| |||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||
Sbjct 53 A-AAGAGAGAAATCGACGGTGGTGGTTGATTCGCCGGAGTTCAATTTCGTCGCTCGATTT 111
Query 121 CTCCTCCTTTTCCCCCCGACGAGCTGTGCGAGAGAGGGAGGGGAATCATGCAGAAACGGA 180
||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 112 CTCCTCCTTTT-CCCCCGACGAGC--TGC--GAGAGGGAGGGGAATCATGCAGAAACGGA 166
Query 181 GAACGGTGAAGGAATCTACGAAGAT--A----AGAAATGGTAAAGG-TATGGATTCCGGC 233
||||||||||||||||| ||||||| | |||||||| |||| | |||||||||||
Sbjct 167 GAACGGTGAAGGAATCTCCGAAGATAAAGGTGAGAAATGG-GAAGGTTTTGGATTCCGGC 225
Query 234 GAAAAGAAGAGATCTGAGAAGAGATTGATGAAGTTCGAGGAGTTACCTAGGTATTTGAAA 293
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 226 GAAAAAAAGAGATCTGAGAAGAGATTGATGAAGTTTGAAGAGTTACCTAGGTATTTGAAA 285
Query 294 GATAACGAGTTCATACACAATCATTATCGATGTGAGTGGTCAATCAAAGAAACTTTCCTC 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GATAACGAGTTCATACACAATCATTATCGATGTGAGTGGTCAATCAAAGAAACTTTCCTC 345
Query 354 AGCGCTTTCTCATGGCACAATGAGACTCTCAACATCTGGACGCATTTGTGTGGATTTGCG 413
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 346 AGCGCTTTCTCATGGCACAATGAGACTCTCAACATCTGGACGCATTTGTGTGGGTTTGCG 405
Query 414 ATATTTACTTGGATGATGGTTGTGAGTTCAATGGAGACGACGGAGCTTGGCCTCGCCGGC 473
|||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 406 ATATTTGCTTGGATGATGGTTGTGAGTTCCCTGGAGACGACGGAGCTTGGCCTCACCGGC 465
Query 474 TTTGTTAGCCTTCTCTCCGGAGCAACAATTCGCTGGCCATGGCCGTCAATGGCAATGTCA 533
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 466 TTCGTTAGCCTTCTCTCCGGAGCAACAATTCGCTGGCCATGGCCGTCAATGGCGATGTCA 525
Query 534 AAAGATGTTTACTTCTCCAGCGATCAAACTCTGCATCACGACTTAAACGTGACACACACT 593
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 526 AAAGATGTTTACTTCTCCAGCGATCAAACTCTGCATCACGATTTGAATGTGACACACACT 585
Query 594 CGCTCGCTCCTGAATTCTCAAGGAGATGTTAACTACGAAGCCATTCCGAAATGGCCATGG 653
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 586 CGCTCACTCCTGAATTCTCAAGGAGATGTTAACTACGAAGCCGTTCCTAAATGGCCATGG 645
Query 654 CTTGTGTTCTTGA-CCGGAGCAATGGGCTGCTTGATCTGCAGTTCCATGTCACACCTCTT 712
|| |||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 646 CTCGTGTTCTT-ATCCGGAGCAATGGGCTGCTTGATCTGCAGTTCCATGTCTCACCTCTT 704
Query 713 CGCCTGTCACTCCAGACGGTTCAACCTCTTCTTCTGGCGTCTAGACTACGCTGGAATCTC 772
|||||| ||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 705 CGCCTGCCACTCTAGACGATTCAACCTCTTTTTCTGGCGTCTAGACTATGCCGGAATCTC 764
Query 773 CCTCATGATCGTCTGTTCATTCTTCGCACCTATCTACTATGCATTCTCATGCCACACTTA 832
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 765 CCTCATGATCGTCTGTTCATTCTTCGCACCTATCTACTACGCATTCTCCTGCCATACTTA 824
Query 833 CTGGCGActcttctacctctcatcgatctcaatcctcggtctcctcgccatcttcactct 892
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 825 CTGGCGACTCTTCTACCTCTCCTCGATCTCAATCCTCGGTCTCCTCGCCATCTTCACTCT 884
Query 893 cctctctccatcactctcagctccACGTTTCAGATCTTTCAGAGCAGCTC-TGTTCCTAA 951
||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 885 CCTCTCTCCATCACTTTCAGCTCCACGTTTCAGATCTTTCAGAGCAGCTCCT-TTCCTAA 943
Query 952 CAATGGGATTTTCTGGCGTAATACCAGCCACACATGTGCTTTACCTTCATAAGGATCACC 1011
|||||||||| |||||||||||||| ||| ||||||||||||||||||| || |||||||
Sbjct 944 CAATGGGATTCTCTGGCGTAATACCGGCCTCACATGTGCTTTACCTTCACAAAGATCACC 1003
Query 1012 CAAACGTGCTTATAGCTCTCGTATATGAACTTGCGATGGCTGTGTTGTATGCAACAGGAG 1071
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 CAAACGTGCTTATCGCTCTCGTATATGAACTTGCGATGGCTGTGTTGTATGCAACAGGAG 1063
Query 1072 CAGCGTTTTATGTTACCCGCATACCTGAAAGATGGAAGCCTGGGGCTTTTGATATTGCAG 1131
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1064 CAGCGTTTTATGTTACCCGCATACCTGAAAGATGGAAGCCTGGGGCTTTCGATATTGCAG 1123
Query 1132 GACATAGCCATCAGATATTCCATGTGTTTGTAGTCTTAGGAGCTCTTGCTCATAGTGTTG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GACATAGCCATCAGATATTCCATGTGTTTGTAGTCTTAGGAGCTCTTGCTCATAGTGTTG 1183
Query 1192 CCAGTCTTCTTATCATGGATTTTCGACGGGCTTCTCCTTCTTGTGCCTTTTAACTCGAAA 1251
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1184 CCAGTCTTCTCATCATGGATTTTCGACGGGCTTCTCCTTCTTGTGCCTTTTAACTC-A-- 1240
Query 1252 ACACATTGTAAAACATTTAGTAATACTT-CATTCAATGTATCAATGTATGTTTGTCCCCA 1310
|||||||||||||||| |||||| || | || |||||||||||| ||||||||
Sbjct 1241 -----TTGTAAAACATTTAGTGATACTTTCAATGTATCAATCAATGTATGTGTGTCCCCA 1295
Query 1311 TAGAAGACGCAATGTACCATCCAAGATATTCAAAAGTAAACAAAAAC 1357
||||||||||||||||| ||||||| || ||||||||||||||||||
Sbjct 1296 TAGAAGACGCAATGTACTATCCAAGTTACTCAAAAGTAAACAAAAAC 1342
> Ahg481271 jgi|Araly1|481271|fgenesh2_kg.4__331__AT2G24150.1
Length=1098
Score = 459 bits (248), Expect = 3e-128
Identities = 505/627 (81%), Gaps = 26/627 (4%)
Strand=Plus/Plus
Query 630 GAAGCCATTCCGAAATGGCCATGGCTTGTGTTCTTGA-CCGGAGCAATGGGCTGCTTGAT 688
||||| ||||| |||||||||||||| |||| ||| | |||||||||||| || || ||
Sbjct 427 GAAGCTATTCCAAAATGGCCATGGCTCGTGTACTT-AGTCGGAGCAATGGGTTGTTTAAT 485
Query 689 CTGCAGTTCCATGTCACACCTCTTCGCCTGTCACTCCAGACGGTTCAACCTCTTCTTCTG 748
|||||| || | ||||||||| |||| |||||||| | ||| |||||||||||||||||
Sbjct 486 CTGCAGCTCTGTTTCACACCTCCTCGCTTGTCACTCAAAACGTTTCAACCTCTTCTTCTG 545
Query 749 GCGTCTAGACTACGCTGGAATCTCCCTCATGATCGTCTG-TTCATTCTTCGCACCTATCT 807
|||| |||||||||| ||||| || ||||||||||| || ||| ||||| ||||| ||||
Sbjct 546 GCGTTTAGACTACGCAGGAATATCTCTCATGATCGT-TGCTTCTTTCTTTGCACCAATCT 604
Query 808 ACTATGCATTCTCATGCCACACTTACTGGCGAct-cttctacctctcatcgatctcaatc 866
|||| |||||||| |||||| || ||| || | | ||||| | || |||||||| |||
Sbjct 605 ACTACGCATTCTCTTGCCACCCTAACTTCCGTTTAC-TCTACTTGTCCTCGATCTCGATC 663
Query 867 ctcggtctcctcgccatcttcactctcctctctccat-cactctc-agctccACGTTTCA 924
||||||||||| || ||| |||||||||||||||| | ||||| | | || ||||| |
Sbjct 664 CTCGGTCTCCTTGCTATCATCACTCTCCTCTCTCC-TGGTCTCTCTA-CACCGCGTTTTA 721
Query 925 GATCTTTCAGAGC-AGCTCTGTTCCTAACAATGGGATTTTCTGGC-GTAATACCAGCCAC 982
|| |||||||||| | ||| ||||| ||||||||| ||| || || ||||| || ||
Sbjct 722 GACCTTTCAGAGCTA-ATCTTTTCCTTGCAATGGGATCATCT-GCTGTGATACCTGCTAC 779
Query 983 ACATGTGCTTTACCTTCA-TAAGGATCACCCAAACGTGCTT-ATAGCTCTC-GTATATGA 1039
||||||||||| |||| | | |||||| || ||||| || || || ||| || || ||
Sbjct 780 ACATGTGCTTTGCCTTTACT-GGGATCATCCTAACGT-ATTCATCGCCCTCGGT-TACGA 836
Query 1040 -ACTTGCGA-TGGCTGTGTTGTATGCAACAGGAGCAGCGTTTTATGTTACCCGCATACCT 1097
| |||| | | || ||| |||| |||||| |||||||||||| ||| | |||
Sbjct 837 GA-TTGCCACAGCCT-TGTCGTATTTTGTGGGAGCAACGTTTTATGTTAGCCGTGTGCCT 894
Query 1098 GAAAGATGGAAGCCTGGGGCTTTTGATATTGCAGGACATAGCCATCAGATATTCCATGTG 1157
|| |||||||||||||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 895 GAGAGATGGAAGCCTGGAGCGTTTGATATGGCTGGACATAGCCATCAGATATTCCATGTG 954
Query 1158 TTTGTAGTCTTAGGAGCTCTTGCTCATAGTGTTGCCAGTCTTCTTATCATGGATTTT-CG 1216
|||||||| || || |||||||||||| |||| ||| |||||| ||||| |||||| |
Sbjct 955 TTTGTAGTTTTTGGTGCTCTTGCTCATTGTGTCACCACTCTTCTCATCATTGATTTTTC- 1013
Query 1217 ACGGGCTTCTCCTTCTTGTGCCTTTTA 1243
|| |||||| |||||||||| |||||
Sbjct 1014 ACTGGCTTCCCCTTCTTGTGGGTTTTA 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51237200448
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5