BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30860.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944901 jgi|Araly1|944901|scaffold_701130.1 2410 0.0
> Ahg944901 jgi|Araly1|944901|scaffold_701130.1
Length=1535
Score = 2410 bits (1305), Expect = 0.0
Identities = 1451/1522 (95%), Gaps = 8/1522 (1%)
Strand=Plus/Plus
Query 57 TGTACTTTCGAGTTT-AGGATGTTAGATCTGGGAAACATGTCTATGTCTGCATCTGTTGC 115
||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 3 TGTACTTACGAGTTTCA-GATGTTAGATCTGGGAAACATGTCTTTGTCTGCATCTGTGGC 61
Query 116 TCTCACTTGTTGCCCTTCTTTTCTTCCGGCGGCTTCAGGCCCTGAATTAGCCAAATCTAT 175
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 62 TCTCACTTGTTGCCCTTCTTTTCTTCCGGCGGCTTCAGGCCCGGAATTATCCAAATCTAT 121
Query 176 CAATTCCCCGGAAAATCTAGCCGGAGAATGCAATGGGAAACATTTACCAATGATTCCACC 235
| ||||||| |||||| |||||||||| ||||||||||| |||| ||| |||||||||||
Sbjct 122 CGATTCCCCTGAAAATATAGCCGGAGACTGCAATGGGAAGCATTCACCGATGATTCCACC 181
Query 236 GGAGGAAGAGGTCAAG-GACATTAAAATTGCTAATGGAGTCACTGCTTTTACCCGGAAAC 294
|||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 182 GGAGGAAGAGGT-TAGAGACATTAAAACTGCTAATGGAGTCACTGCTTTTACCGGGAAAC 240
Query 295 AGAATCCGTCTGACAGAGTCAAGAAAGGGTTTG-TCTTGGATGATCATGTGAAGGATTGG 353
||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||
Sbjct 241 AGAATCCGTCTGACAGAGTCAAGAAAGGG-TTGATTTTGGAAGATCATGTGAAGGATTGG 299
Query 354 GTCAAGAGAAGAGTGGCTTCTGGTGTTTCAGAGTCGACATGTTTCCTTCCTTTTCTTGTT 413
||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||
Sbjct 300 GTCAAGAGAAGAGTGGCTTCTGGTGTTTCAGAGACGAGATGTTGCCTCCCTTTTCTTGTT 359
Query 414 GGTGCCAAGAAAATGGTTGATTGTCTTGTTTGCCATAAGCCGGTGTACCCGGGGGAAGAC 473
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 360 GGTGCCAAGAAAATGGTTGATTGTCTTGTTTGCCATAAGCCGGTGTCCCCGGGGGAAGAA 419
Query 474 TTATCGTGTTCTGTTCGCGGCTGCCAAGGCGCTTATCACTCGCTTTGTGCGAAAGAAAGT 533
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTATCGTGTTCTGTTCGTGGCTGCCAAGGCGCTTATCACTCGCTTTGTGCGAAAGAAAGT 479
Query 534 CTTGGTTTTTCTAAGTCAAGCAAATTTAAATGCCCTCAACATGAGTGCTTTGTCTGCAAG 593
|| || |||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 480 CTCGGGTTTTCTAAGTCAAGCAAATTTAGATGCCCTCAACATGAGTGTTTTGTCTGCAAG 539
Query 594 CAAAGAACACAATGGCGGTGTGTTAAGTGTCCAATGGCTGCTCATGATAAACATTCTCCA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAAGAACACAATGGCGGTGTGTTAAGTGTCCAATGGCTGCTCATGATAAACATTCTCCA 599
Query 654 TGGTCAAAAGAAATACTTCACTTAAAAGACCAACCAGGAAGAGCAGTTTGTTGGAGGCAT 713
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 TGGTCAAAAGAAATACTTCACTTGAAAGACCAACCAGGAAGAGCAGTTTGTTGGAGGCAT 659
Query 714 CCAACTGATTGGCGGCTAGACACAAAGCATGCAGTTGCACAGAGTGAGATTGAGGAAGTC 773
|||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 660 CCAACTAATTGGCGGCTAGACACAAAGCATGCAGTTGCGCAGAGTGAGATGGAGGAAGTC 719
Query 774 TTTTGCCAGTTGCCTTTGCCATATGTGGAAGAGGAGTTTAAGATTGACTTAGCATGGAAA 833
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TTTTGCCAGTTGCCTTTGCCATATGTGGAAGAGGAGTTTAAGATTGACTTAACATGGAAA 779
Query 834 GATTCTGTTGTGAAGGAAGATCCGCCTTCTTATGTGCACATTAGACGCAATATTTACCTC 893
|||||||||||||| || |||| |||| ||||||||||||| ||||||||||||||| |
Sbjct 780 GATTCTGTTGTGAAAGATGATCTGCCTCCTTATGTGCACATCAGACGCAATATTTACTTT 839
Query 894 GTTAAGAAAAAGCGTGATAATGCTAATGATGGTGTTGGGTGCACAAATTGTGGCCCTAAT 953
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 GTAAAGAAGAAGCGTGATAATGCTAATGATGGTGTTGGGTGCACAAATTGTGGCCCTACT 899
Query 954 TGC-GATAGAAGCTGTGTTTGCAGGGTTCAATGCATAAGCTGTTCAAAGGGATGCAGCTG 1012
||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 900 TGCTG-TAGAAGCTGTGTTTGCAGGGTTCAATGCATAAGCTGTTCAAAAGGATGCAGATG 958
Query 1013 TCCTGAAAGTTGTGGAAACAGACCATTCCGCAAAGAGAAAAAGATCAAAATTGTTAAGAC 1072
|||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 959 TCCTGAAACTTGTGGAAACAGACCATTCCGCAAAGAGAAGAAGATCAGAATTGTTAAGAC 1018
Query 1073 TGAACATTGCGGTTGGGGAGTTGAGGCAGCAGAATCAATCAACAAAGAGGACTTCATTGT 1132
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGAACATTGCGGTTGGGGAGTAGAGGCAGCAGAATCAATCAACAAAGAGGACTTCATTGT 1078
Query 1133 CGAATACATTGGTGAAGTGATTAGTGATGCTCAATGTGAGCAAAGGCTTTGGGATATGAA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CGAATACATTGGTGAAGTGATTAGTGATGCTCAATGTGAGCAAAGGCTTTGGGATATGAA 1138
Query 1193 ACACAAAGGCATGAAAGACTTTTACATGTGTGAGATTCAAAAAGACTTCACGATTGATGC 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1139 ACACAAAGGCATGAAAGACTTTTACATGTGTGAGATTCAGAAAGACTTCACGATTGATGC 1198
Query 1253 TACCTTCAAAGGGAACGCCTCTCGGTTTCTGAACCACAGTTGCAACCCAAACTGTGTATT 1312
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1199 CACCTTCAAAGGGAACGCCTCTCGGTTTCTAAATCACAGTTGCAACCCAAACTGTGTATT 1258
Query 1313 GGAAAAGTGGCAAGTTGAAGGTGAGACCCGTGTGGGTGTCTTTGCAGCTCGTCAAATAGA 1372
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 GGAAAAGTGGCAAGTTGAAGGTGAGACCCGTGTAGGTGTCTTTGCAGCTCGTCAAATAGA 1318
Query 1373 AGCAGGAGAGCCACTTACATATGACTACAGATTTGTGCAGTTTGGTCCTGAAGTAAAGTG 1432
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1319 AGCAGGAGAGCCACTTACATATGACTATAGATTTGTGCAGTTTGGTCCTGAAGTAAAGTG 1378
Query 1433 CAATTGTGGTTCTGAAAACTGTCAAGGTTATCTTGGGACAAAGAGGAAAGAACCAAACTG 1492
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1379 CAATTGTGGTTCTGAAAACTGTCAAGGTTATCTTGGGACAAAGAGGAAAGAGCCAAACTG 1438
Query 1493 TTTGGTTGTATCTTGGGGAGCAAAACGCAGAAGATTGTTTCACCGACCTATAGCCCGTAA 1552
||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 1439 TTTGGCTGTATCTTGGGGAGCAAAACGCAGAAGAGTGTTTCACCGACCTTTAGCCCATAA 1498
Query 1553 ACCGCAGCAAGATTAGCTGCAA 1574
| ||||||||||||||| |||
Sbjct 1499 ATTGCAGCAAGATTAGCTTCAA 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5