BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30872.1

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944897 jgi|Araly1|944897|scaffold_701126.1                        161    2e-39


> Ahg944897 jgi|Araly1|944897|scaffold_701126.1
Length=328

 Score =  161 bits (87),  Expect = 2e-39
 Identities = 95/99 (96%), Gaps = 0/99 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGAAAGCTTCAGCAACAATCATCATTCTTTTGATCTTGTTCTGTTCTTTGGCTTGT  60
            |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  27   ATGGCGAAAGCTTCAGCAACAATTATCATTCTTTTGATCTTGTTCTGTTCTTTGGCTTGT  86

Query  61   GAGGCACGTGTTCGTCTCATTAGTCCTGATCTTCTGACT  99
            ||||||||||||||||||| |||||||||||||| ||||
Sbjct  87   GAGGCACGTGTTCGTCTCACTAGTCCTGATCTTCCGACT  125



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9729675195


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5