BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30872.1 Length=279 Score E Sequences producing significant alignments: (Bits) Value Ahg944897 jgi|Araly1|944897|scaffold_701126.1 161 2e-39 > Ahg944897 jgi|Araly1|944897|scaffold_701126.1 Length=328 Score = 161 bits (87), Expect = 2e-39 Identities = 95/99 (96%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 ATGGTGAAAGCTTCAGCAACAATCATCATTCTTTTGATCTTGTTCTGTTCTTTGGCTTGT 60 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 27 ATGGCGAAAGCTTCAGCAACAATTATCATTCTTTTGATCTTGTTCTGTTCTTTGGCTTGT 86 Query 61 GAGGCACGTGTTCGTCTCATTAGTCCTGATCTTCTGACT 99 ||||||||||||||||||| |||||||||||||| |||| Sbjct 87 GAGGCACGTGTTCGTCTCACTAGTCCTGATCTTCCGACT 125 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9729675195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5