BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30880.1

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491662 jgi|Araly1|491662|fgenesh2_kg.7__1095__AT4G30880.1         713    0.0  


> Ahg491662 jgi|Araly1|491662|fgenesh2_kg.7__1095__AT4G30880.1
Length=440

 Score =  713 bits (386),  Expect = 0.0
 Identities = 424/442 (96%), Gaps = 3/442 (1%)
 Strand=Plus/Plus

Query  3    CTCACTAGATTCAAACTAAAATGGTGATCGGTTCTCGTGCTTTGATTGGTCTAACAATGA  62
            ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct  1    CTCACAAGATTCAAACTAAAATGGTGATCGGGTCTCGTGCTTTGATTGGTCTAATAATGA  60

Query  63   TCCTTGTGATCTCAGGAACACTACCAGTTCCAGGGCAAGGAACGTGCCAAGGAGACATCG  122
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  61   TCCTTGTGATCTCAGGAACACTTCTAGTTCCAGGGCAAGGAACGTGCCAAGGAGACATCG  120

Query  123  AAGGTCTGATGAAAGAATGCGCCGTCTACGTGCAGCGTCCAGGCCCAAAGGTAAACCCGT  182
            |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct  121  AAGGTCTGATGAAAGAATGCGCGGTCTACGTGCAGCGTCCAGGCCCAAAGGTGAACCCGT  180

Query  183  CCGAAGCGTGCTGCAGAGTGGTTAAGAGATCAGACATCCCTTGCGCATGTGGCCGTATCA  242
            ||||||| ||||||||||| |||||||||||||| |||| |||||| |||||||||||||
Sbjct  181  CCGAAGCATGCTGCAGAGTCGTTAAGAGATCAGATATCCTTTGCGCTTGTGGCCGTATCA  240

Query  243  CAGCTTCGGTGCA-ACAAATGATAGACATGGATAAGGTTGTTCATGTCACTGCCTTTTGT  301
            ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CAGCTTCAGTGCAGA-AAATGATAGACATGGATAAGGTTGTTCATGTCACTGCCTTTTGT  299

Query  302  GGGAAGCCTCTCGCTCATGGTACCAAGTGTGGAAGTTACGTTGTGCCATGAGATTTGGGA  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GGGAAGCCTCTCGCTCATGGTACCAAGTGTGGAAGTTACGTTGTGCCATGAGATTTGGGA  359

Query  362  CCAGAACTTGAGAGCTAAGGGTTTGAAATGTACTCTTGTAATCTCTAATATGTTGAATGA  421
            ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct  360  CCAGAACTTGAGAGCAAAGGGTTTGAAA-GTACTCTTGTAATCTCTAATATATTGAATGA  418

Query  422  AATAAATTTATTTTCCTTGTTT  443
            ||||||||||||||||||||||
Sbjct  419  AATAAATTTATTTTCCTTGTTT  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16063502969


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5