BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30900.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944895 jgi|Araly1|944895|scaffold_701124.1 1598 0.0
> Ahg944895 jgi|Araly1|944895|scaffold_701124.1
Length=1003
Score = 1598 bits (865), Expect = 0.0
Identities = 961/1005 (96%), Gaps = 15/1005 (1%)
Strand=Plus/Plus
Query 366 aagaagaaaggagaCAAAACAATGAGTGTGTCTTTGAGTGTGATGTCATTCAATCTTCAC 425
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAG-AAGGAGACAAAACAATGAGTGTGTCTTTGAGTGTGATGTCATTCAATCTTCAC 59
Query 426 GATGATCTACCTGAAGAAAGCCCTAATTCATGGCTCAAAAGGAAAGATTTGTGTCTCACT 485
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 60 GATGATCAACCTGAAGAAAGCCCTAATTCATGGCTCAAAAGGAAGGATTTATGTCTCACT 119
Query 486 GTCATCACTAGTTACTCCCCCATTGTTCTCTGTACCCAACAAGGTGTGAAGTCGCAGTTG 545
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 120 GTCATCACCAGTTACTCCCCCATTGTTCTCTGTACCCAACAAGGTGTGAAGTCTCAATTG 179
Query 546 GATTATCTTCAGCAGGGGTTGCCAGCCTATGATCAATTTGGCATATCAAGAACAGGACCT 605
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 GATTATCTTCAGCAGGGGTTGCCAGCCTATGATCAATTTGGCATATCAAGAAAAGGACCT 239
Query 606 GGGGATGCTAATGATGAACACTGCACCATCTTCTTCAACAAGGAAAAAGTAGAGCTGCTA 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGGATGCTAATGATGAACACTGCACCATCTTCTTCAACAAGGAAAAAGTAGAGCTGCTA 299
Query 666 GAGGGTGGAACTTTTTGGTTGTCAGAGTCTCCCTCGGTCCCTGGAAGCACGGCATGGGGT 725
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 300 GAGGGTGGAACTTTTTGGCTGTCGGAGTCTCCCTCGGTCCCTGGAAGCACAGCATGGGGT 359
Query 726 TCCGCAGTTCCTTGTATAGCGACAT-G-----G---G-CT--ACATTCCAACTT-AAAGG 772
||||||||||||||||||||||||| | | | || ||||||||| || |||||
Sbjct 360 TCCGCAGTTCCTTGTATAGCGACATGGTTTACGACTGCCTACACATTCCAA-TTGAAAGG 418
Query 773 AGCGGAGCCGCCTGGTTTTTCGTTTCAGATAGTCAACACAAACTTGGATGAAATCAGCCC 832
||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 AGCGGAGCCACCGGGATTTTCGTTCCAGATAGTCAACACAAACTTGGATGAAATCAGCCC 478
Query 833 TCGTGCCCGTAGGCGAAGTGCTTTACTCACATGGCAACACATAGCATCATTACCTCCCAC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TCGTGCCCGTAGGCGAAGTGCTTTACTCACATGGCAACACATAGCATCATTACCTCCCAC 538
Query 893 TTTGCCGGTTGTGTACTGTGGAGGATTCAACACACAGAAGGAATCAACAACAGGGCGGTT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 TTTGCCGGTTGTGTACTGTGGAGGATTCAACACACAGAAGGAATCAACAACAGGGCGATT 598
Query 953 TCTGTTGGGCAGATCTAGAGAGCATGGTGTGGTAGGAGATATGAGAGACGCATGGCCAAG 1012
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 599 TCTGTTGGGCAGATCTAGAGAGCACGGTGTGGTAGGGGACATGAGAGACGCATGGCCAAG 658
Query 1013 TGCCCGAGTAAGAAAAAACGTCGCTCTCATAAGAACATACCATGATTTCAAAGGTGACAA 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGCCCGAGTAAGAAAAAACGTCGCTCTCATAAGAACATACCATGATTTCAAAGGTGACAA 718
Query 1073 GCAGGGAACGGTCGAGTTCCTGAAGCTGATATTCAGAGCGTTATGCCTCTGCTGGGACCG 1132
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 GCAGGGAACTGTCGAGTTCTTGAAGCTGATATTCAGAGCGTTATGCCTCTGTTGGGACCG 778
Query 1133 ACAGACGCAAGATCTACACACGGATTGGATACTTTACAGAGGTAGATCTATAGTTCCTGT 1192
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACAGACACAAGATCTACATACAGATTGGATACTTTACAGAGGTAGATCTATAGTTCCTGT 838
Query 1193 AATGTGCGAGATCGTAAATGATAAGATTGACGACTTGTATCCTTCATCTCACTACCCTGT 1252
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 AATGTGCGAGATCGTAAATGATAAGATTGACGACTTATATCCTTCATCTCACTACCCTGT 898
Query 1253 GTTTGCTGAGTTTATGCTTCCTCGTTCTGTAAGAATGCTTGAACCTACTCCTCCTGTTTC 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GTTTGCTGAGTTTATGCTTCCTCGTTCTGTAAGAATGCTTGAACCTACTCCTCCTGTTTC 958
Query 1313 TGCTCCTGCTCAAGAGGAAAGCTAGAACACATGTCCTCACTTGCT 1357
|||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 959 TGCTCCTGCTCAAGCGGAAAGCTAGAACACATGTCCTCTCTTGCT 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5