BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30910.1
Length=2021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889026 jgi|Araly1|889026|Al_scaffold_0007_1012 2639 0.0
Ahg944893 jgi|Araly1|944893|scaffold_701122.1 2608 0.0
Ahg481277 jgi|Araly1|481277|fgenesh2_kg.4__337__AT2G24200.1 1349 0.0
> Ahg889026 jgi|Araly1|889026|Al_scaffold_0007_1012
Length=1749
Score = 2639 bits (1429), Expect = 0.0
Identities = 1648/1754 (94%), Gaps = 13/1754 (1%)
Strand=Plus/Plus
Query 68 ATGGCGGTCACTTTGGTAACGT-C-AT-GTGcttcttcttctcgcttccatttccgctct 124
|||||||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGTCACTTTGGTAACGTCCTTTACTTCTTCTTCTTCTCGCTTCCATTTCCGCTCC 60
Query 125 ttctcctcttctccgtcgtctctctcctcttGTTTCGTACGATTCCAGTTGCTGTCTCGC 184
|||||||||||||| ||||||||||| ||||||||||| |||||||||| || |||||||
Sbjct 61 TTCTCCTCTTCTCCTTCGTCTCTCTCTTCTTGTTTCGTCCGATTCCAGTCGCCGTCTCGC 120
Query 185 CTTAGAGTCTCTTTCGCCATCACGCCTCTCTACTGCTCTTCTAAAGCCACGGCTCATACA 244
|||| |||| ||||||| | |||||||||||||| ||||||||||||| | ||||||||
Sbjct 121 CTTAAAGTCGCTTTCGCGGTTACGCCTCTCTACTGTTCTTCTAAAGCCATGTCTCATACA 180
Query 245 ATCGCACACGCTACTCTTGGCCTTACTCAGGCCAACTCCGTCGATCATCCTAAGATCTCA 304
|| |||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 181 ATAGCACACGCTACTCTCGGCCTCACTCAGGCTAACTCCGTTGATCATCCTAAGATCTCA 240
Query 305 TTTTCCGGGAAGGAGATTGACGTGACTGAATGGAAAGGTGATATACTCGCTGTTGGAGTG 364
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 241 TTTTCCGGGAAGGAGATCGACGTGACGGAATGGAAAGGTGATATACTCGCGGTTGGAGTG 300
Query 365 ACGGAGAAAGATATGGCTAAGGATGCCAACTCCAAGTTCGAGAACCCCATACTGAAGAAG 424
| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 301 ATGGAGAAAGATATGACTAAGGATGCCAACTCCAAGTTCGAAAACCCGATACTGAAGAAG 360
Query 425 CTTGATGCCCACTTGGGTGGACTTCTAGCTGATGTCTCGGCTGAGGAAGATTTTTCTGGG 484
|||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||
Sbjct 361 CTTGATGCTCACTTGGGTGGACTTTTAGCTGATGTCTCTTCTGAGGAAGATTTTTCCGGG 420
Query 485 AAACCTGGCCAGTCA-ACAGTTCTTAGGCTTCCGGGTCTCGGCTCAAAGCGGGTCGGTTT 543
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AAACCTGGCCAGT-ATACAGTTCTTAGGCTTCCGGGTCTCGGGTCAAAGCGGGTCGGTTT 479
Query 544 GATTGGTCTTGGAAAATCTGCTTCAACCCCTTCGGCTTTTCAGAGTCTTGGTGAGGCTGT 603
||||||||| ||||||||||||||| | ||||| |||||||||||||| |||||||||||
Sbjct 480 GATTGGTCTAGGAAAATCTGCTTCATCTCCTTCCGCTTTTCAGAGTCTCGGTGAGGCTGT 539
Query 604 TGCTGCAGCTGCTAAAGCTTCTCAAGCTAGCAGTGTTGCAGTTGTTCTCGCCTCCTCTGA 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 540 TGCTGCAGCTGCTAAAGCTTCTCAAGCTACCAGTGTTGCAGTTGTTCTCGCCTCCTCAGA 599
Query 664 GAGTTTTTCTGATGAATCTAAGCTCAGTTCTGCTTCAGATATAGCTTCAGGCACAGTGCT 723
|||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 600 GAGTGTTTCTGATGAATCTAAACTCAGTTCTGCTTCAGCTATAGCTTCAGGCACAGTGCT 659
Query 724 TGGTTTGTTTGAAGACAGTCGGTATAAGTCTGAGTCAAAGAAACCATCTCTCAAATCTGT 783
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGTTTGTTTGAAGACAGCCGGTATAAGTCTGAGTCAAAGAAACCATCTCTCAAATCTGT 719
Query 784 AGTAT-TCATTGGCTTTGGCACTGGACCTGAACTAGAGAACAAGCTTAAGTATGCTGAAC 842
| || |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 720 -GGATATCATTGGCTTTGGCACTGGACCTGAACTAGAGGAGAAGCTTAAGTATGCTGAAC 778
Query 843 ATGTTTCTTATGGCGTAATTTTCACGAAAGAACTTGTTAATTCACCAGCCAATGTTCTCT 902
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 779 ATGTTTCTTATGGCGTAATTTTCGGGAAAGAACTTGTTAATTCTCCAGCCAATGTTCTCA 838
Query 903 CCCCTGCCGTACTAGCTGAGGAAGCCTCGAATCTGGCTTCCATGTACAGTAATGTCATGA 962
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 839 CCCCTGCCGTACTAGCTGAGGAAGCCTCAAATCTGGCTTCCATGTACAGTGATGTCATGA 898
Query 963 CTGCAAACATCTTGAAAGAGGAGCAATGCAAAGAATTGAAGATGGGTTCATATCTTGCTG 1022
|||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 899 CTGCAAACATCTTGAACGAGGAACAATGCAAAGAGCTGAAGATGGGTTCATATCTTGCTG 958
Query 1023 TAGCTGCTGCTTCAGCTAATCCACCTCATTTCATCCACCTTATCTACAAACCTTCTAGTG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TAGCTGCTGCTTCAGCTAATCCACCTCATTTCATCCACCTTATCTACAAACCTTCTAGTG 1018
Query 1083 GCCCTGTTAAAACCAAACTTGCTCTTGTTGGAAAAGGATTGACATTTGACAGCGGTGGCT 1142
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1019 GCCCTGTTAAAACCAAACTTGCTCTTGTTGGGAAAGGATTGACATTTGACAGCGGTGGCT 1078
Query 1143 ACAACATTAAAATTGGGCCTGA-ATTAATAATTGAGCTCATGAAAATCGATGTGGGAGGT 1201
|||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 1079 ACAACATTAAGATTGGGCCTGACATGA-TAATTGAGCTCATGAAAATCGATGTGGGAGGT 1137
Query 1202 TCAGCTGCTGTTCTTGGCGCTGCAAAAGCCATTGGTGAAATTAAGCCTCCCGGTGTTGAG 1261
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1138 TCAGCTGCTGTTCTTGGCGCTGCAAAAGCCATTGGTCAAATTAAGCCTCCCGGTGTTGAG 1197
Query 1262 GTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACCGGAATGAGACCTGGA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACCGGAATGAGACCTGGA 1257
Query 1322 GATGTCATCACAGCCTCAAACGGGAAGACAATTGAGGTCAACGACACCGATTCTGAAGGT 1381
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 1258 GATGTCATCACAGCCTCAAACGGAAAGACAATTGAGGTCAACAACACCGATGCTGAAGGT 1317
Query 1382 CGGCTAACACTTGCAGATGCTCTAGTTTATGCTTGCAACCAGGGTGTCGATAAGATTGTT 1441
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 CGACTAACACTTGCAGATGCTCTAGTCTATGCTTGCAACCAGGGTGTCGATAAGATTGTT 1377
Query 1442 GACATTGCAACATTGACCGGGGAGATTATTGTTGCTCTTGGACCATCAATGGCAGGCATG 1501
||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1378 GACCTTGCAACATTGACTGGGGCTATTATTGTTGCTCTTGGACCATCAATGGCAGGCATG 1437
Query 1502 TACACAGCTAGTGATGAGCTTGCCAAGGAGGTAATTGCTGCATCACAGAGGAGTGGAGAG 1561
|| ||||||||||||||| |||| |||||||||| |||||||||| | |||||||| |||
Sbjct 1438 TATACAGCTAGTGATGAGTTTGCAAAGGAGGTAACTGCTGCATCAGAAAGGAGTGGCGAG 1497
Query 1562 AAGTTATGGAGAATGCCTATGGAAGAGAGTTATTGGGAGATGATGAAGTCAGGTGTTGCA 1621
||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |||
Sbjct 1498 AAGTTATGGAGAATGCCTATGGAAGAGAGGTACTGGGAGATGATGAAGTCAAGTGTGGCA 1557
Query 1622 GATATGGTTAACTTTGGAGGCCGTGCAGGTGGAT-CCATCACCGCAGCTCTCTTTTTGAA 1680
|||||||||||||| |||||||||||||||| || |||||||||| |||||||| |||||
Sbjct 1558 GATATGGTTAACTTGGGAGGCCGTGCAGGTG-ATTCCATCACCGCGGCTCTCTTCTTGAA 1616
Query 1681 ACGGTTTGT-TAGCGAGAATGTTGAGTGGTTGCACATAGATATGGCTGGACGGGTGTGGA 1739
|| |||||| | ||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 1617 ACAGTTTGTGT-GCGAGAAGGTTGAGTGGATGCACATAGATATGGCTGGACCAGTGTGGA 1675
Query 1740 ACGAGAAGAAGAAAGCTGCGACTGGGTTTGGAGTTGCGACACTTGTTGAGTGGGTACAGA 1799
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1676 ACGAGAAGAAGAAAGCTGCGACTGGTTTTGGAGTTGCGACACTCGTTGAGTGGGTACAGA 1735
Query 1800 ACAATTCTTCTTAA 1813
||||||||||||||
Sbjct 1736 ACAATTCTTCTTAA 1749
> Ahg944893 jgi|Araly1|944893|scaffold_701122.1
Length=1792
Score = 2608 bits (1412), Expect = 0.0
Identities = 1654/1772 (93%), Gaps = 11/1772 (1%)
Strand=Plus/Plus
Query 46 AAGCTCAGTGGAGACTTCTCAAATGGCGGTCACTTTGGTAACGT-C-ATG-TGcttcttc 102
||||||||||| | |||||||||||| |||||||||||||||| | || | |||||||
Sbjct 1 AAGCTCAGTGG-G-TTTCTCAAATGGCCGTCACTTTGGTAACGTCCTTTGCTTCTTCTTC 58
Query 103 ttctcgcttccatttccgctctttctcctcttctccgtcgtctctctcctcttGTTTCGT 162
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 59 TTCTCGCTTCCATTTCCGCTCCTTCTCCTCTTCTCCTTCGTCTCTCTCTTCTTGTTTCGT 118
Query 163 ACGATTCCAGTTGCTGTCTCGCCTTAGAGTCTCTTTCGCCATCACGCCTCTCTACTGC-T 221
||||||||||||| ||||||||||||| || |||| ||| ||||||||||||||| | |
Sbjct 119 CCGATTCCAGTTGCCGTCTCGCCTTAGACTCGCTTTTGCCGTCACGCCTCTCTACT-CTT 177
Query 222 CTTCTAAAGCCACGGCTCATACAATCGCACACGCTACTCTTGGCCTTACTCAGGCCAACT 281
|||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 178 CTTCTAAAGCCATGGCTCATACAATCGCACAAGCTACTCTCGGCCTTACTCATGCCAACT 237
Query 282 CCGTCGATCATCCTAAGATCTCATTTTCCGGGAAGGAGATTGACGTGACTGAATGGAAAG 341
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 238 CCGTCGATCATCCAAAGATCTCATTTTCCGGGAAGGAGATCGACGTGACGGAATGGAAAG 297
Query 342 GTGATATACTCGCTGTTGGAGTGACGGAGAAAGATATGGCTAAGGATGCCAACTCCAAGT 401
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 GTGATATACTCGCGGTTGGAGTGACGGAGAAAGATATGGCTAAGGATGTGAACTCCAAGT 357
Query 402 TCGAGAACCCCATACTGAAGAAGCTTGATGCCCACTTGGGTGGACTTCTAGCTGATGTCT 461
|||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 358 TCGAAAACCCCATATTGAAGAAGCTCGATGCTCACTTGGGTGGACTTCTAGCTGATGTCT 417
Query 462 CGGCTGAGGAAGATTTTTCTGGGAAACCTGGCCAGTCAACAGTTCTTAGGCTTCCGGGTC 521
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTTCTGAGGAAGATTTTTCCGGGAAACCTGGCCAGTCAACAGTTCTTAGGCTTCCGGGTC 477
Query 522 TCGGCTCAAAGCGGGTCGGTTTGATTGGTCTTGGAAAATCTGCTTCAACCCCTTCGGCTT 581
|||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 478 TCGGGTCAAAGCGGGTCGGTTTGATTGGTCTAGGAAAATCTGCTTCATCTCCTTCGGCTT 537
Query 582 TTCAGAGTCTTGGTGAGGCTGTTGCTGCAGCTGCTAAAGCTTCTCAAGCTAGCAGTGTTG 641
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 TTCAAAGTCTTGGTGAGGCTGTTGCTGCAGCTGCTAAAGCTTCTCAAGCTAGTAGTGTTG 597
Query 642 CAGTTGTTCTCGCCTCCTCTGAGAGTTTTTCTGATGAATCTAAGCTCAGTTCTGCTTCAG 701
|||||||||| || ||||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct 598 CAGTTGTTCTTGCATCCTCAGAGAGTGTTTCTGATGAATCCAAGCTCAGTTCTGCTTCAG 657
Query 702 ATATAGCTTCAGGCACAGTGCTTGGTTTGTTTGAAGACAGTCGGTATAAGTCTGAGTCAA 761
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 CTATAGCTTCAGGCACAGTGCTTGGTTTGTTTGAAGACAGCCGGTATAAGTCTGAGTCAA 717
Query 762 AGAAACCATCTCTCAAATCTGTAGTAT-TCATTGGCTTTGGCACTGGACCTGAACTAGAG 820
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 718 AGAAACCATCTCTCAAATCTGT-GGATATCATTGGCTTTGGCACTGGACCTGAACTAGAG 776
Query 821 AACAAGCTTAAGTATGCTGAACATGTTTCTTATGGCGTAATTTTCACGAAAGAACTTGTT 880
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 GAGAAGCTTAAGTATGCTGAACATGTTTCTTATGGCGTAATTTTCGGGAAAGAACTTGTT 836
Query 881 AATTCACCAGCCAATGTTCTCTCCCCTGCCGTACTAGCTGAGGAAGCCTCGAATCTGGCT 940
||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 837 AATTCTCCAGCCAATGTTCTCACCCCTGCCGTACTAGCTGAGGAAGCCTCAAATCTGGCT 896
Query 941 TCCATGTACAGTAATGTCATGACTGCAAACATCTTGAAAGAGGAGCAATGCAAAGAATTG 1000
|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 897 TCCATGTACAGTGATGTCATGACTGCAAACATCTTGAACGAGGAACAATGCAAAGAGCTG 956
Query 1001 AAGATGGGTTCATATCTTGCTGTAGCTGCTGCTTCAGCTAATCCACCTCATTTCATCCAC 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AAGATGGGTTCATATCTTGCTGTAGCTGCTGCTTCAGCTAATCCACCTCATTTCATCCAC 1016
Query 1061 CTTATCTACAAACCTTCTAGTGGCCCTGTTAAAACCAAACTTGCTCTTGTTGGAAAAGGA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1017 CTTATCTACAAACCTTCTAGTGGCCCTGTTAAAACCAAACTTGCTCTTGTTGGGAAAGGA 1076
Query 1121 TTGACATTTGACAGCGGTGGCTACAACATTAAAATTGGGCCTGAATTAATAATTGAGCTC 1180
|||||||||||||||||||||||||||||||| | ||||||| | |||||||||||
Sbjct 1077 TTGACATTTGACAGCGGTGGCTACAACATTAAGACCGGGCCTGGCTGCTTAATTGAGCTC 1136
Query 1181 ATGAAAATCGATGTGGGAGGTTCAGCTGCTGTTCTTGGCGCTGCAAAAGCCATTGGTGAA 1240
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1137 ATGAAATTCGATATGGGAGGTTCAGCTGCTGTTCTTGGCGCTGCAAAAGCCATTGCTCAA 1196
Query 1241 ATTAAGCCTCCCGGTGTTGAGGTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGT 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ATTAAGCCTCCCGGTGTTGAGGTGCACTTTATTGTCGCAGCTTGTGAGAATATGATAAGT 1256
Query 1301 GGTACCGGAATGAGACCTGGAGATGTCATCACAGCCTCAAACGGGAAGACAATTGAGGTC 1360
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1257 GGTACTGGAATGAGACCTGGAGATGTCATCACAGCCTCAAACGGAAAGACAATTGAGGTC 1316
Query 1361 AACGACACCGATTCTGAAGGTCGGCTAACACTTGCAGATGCTCTAGTTTATGCTTGCAAC 1420
||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1317 AACAACACCGATGCTGAAGGTCGACTAACACTTGCAGATGCTCTAGTTTATGCTTGCAAC 1376
Query 1421 CAGGGTGTCGATAAGATTGTTGACATTGCAACATTGACCGGGGAGAT-TATTGTTGCTCT 1479
||||||||||||||| |||||||| ||||||||||||| |||| | |||| |||||||
Sbjct 1377 CAGGGTGTCGATAAGGTTGTTGACCTTGCAACATTGACTGGGGCT-TGTATTATTGCTCT 1435
Query 1480 TGGACCATCAATGGCAGGCATGTACACAGCTAGTGATGAGCTTGCCAAGGAGGTAATTGC 1539
|||| |||||||||||||||| || ||| |||||||| ||||||| |||||||| |||||
Sbjct 1436 TGGAACATCAATGGCAGGCATATATACACCTAGTGATAAGCTTGCAAAGGAGGTGATTGC 1495
Query 1540 TGCATCACAGAGGAGTGGAGAGAAGTTATGGAGAATGCCTATGGAAGAGAGTTATTGGGA 1599
||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1496 TGCATCAGAGAGGAGTGGAGAGAAGTTATGGAGAATGCCGATGGAAGAGAGTTACTGGGA 1555
Query 1600 GATGATGAAGTCAGGTGTTGCAGATATGGTTAACTTTGGAGGCCGTGCAGGTGGATCCAT 1659
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 GATGATGAAGTCAGGTGTGGCAGATATGGTTAACACGGGAGGCCGTGCAGGTGGATCCAT 1615
Query 1660 CACCGCAGCTCTCTTTTTGAAACGGTTTGTTAGCGAGAATGTTGAGTGGTTGCACATAGA 1719
|||||| |||||||| ||||||| ||||| | |||||||||||||||| ||||||||||
Sbjct 1616 CACCGCGGCTCTCTTCTTGAAACAATTTGTGAACGAGAATGTTGAGTGGATGCACATAGA 1675
Query 1720 TATGGCTGGACGGGTGTGGAACGAGAAGAAGAAAGCTGCGACTGGGTTTGGAGTTGCGAC 1779
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1676 TATGGCTGGACCAGTGTGGAACGAGAAGAAGAAAGCTGCGACTGGTTTTGGAGTTGCTAC 1735
Query 1780 ACTTGTTGAGTGGGTACAGAACAATTCTTCTT 1811
||| || |||||||||||||||||||||||||
Sbjct 1736 ACTCGTGGAGTGGGTACAGAACAATTCTTCTT 1767
> Ahg481277 jgi|Araly1|481277|fgenesh2_kg.4__337__AT2G24200.1
Length=1783
Score = 1349 bits (730), Expect = 0.0
Identities = 1298/1572 (83%), Gaps = 40/1572 (3%)
Strand=Plus/Plus
Query 257 ACTCTTGGCCTTACTCAGGCCAACTCCGTC-GATCATC-CTAAGATCTCATTTTCCGGGA 314
||||| ||||| ||| | |||||||| | || | || | |||||||| || || | ||
Sbjct 82 ACTCTCGGCCTCACTAAACCCAACTCC-ACTGAGCCTCAC-AAGATCTCGTTCTCTGCGA 139
Query 315 AGGAGATTGACGTGACTGAATGGAAAGGTGATATACTCGCT-GTTGGAGTGACGGAGAAA 373
||||| | || || || | ||||||||| | ||||||| | ||||| ||||| ||||||
Sbjct 140 AGGAGGTCGATGTTACGGCATGGAAAGGACACATACTCG-TAGTTGGTGTGACAGAGAAA 198
Query 374 GA-TATGGCTAAGGATGCCAACTCCAAGTTCGAGAACCCCATAC-TGAAGAAGCTTGATG 431
|| | | || || |||| | ||| ||||| ||||| || || | |||| ||||||||||
Sbjct 199 GACT-TAGCCAAAGATGGTAGCTCAAAGTTTGAGAATCCGAT-CTTGAACAAGCTTGATG 256
Query 432 CCCACTTGGGTGGACTTC-TAGCTGATGTCTCGGCTGAGGAAGATTTTTCTGGGAAACCT 490
| |||||| |||||| || ||||| | ||||| ||||||||||||| |||| ||||||
Sbjct 257 CTCACTTGAGTGGAC-TCTTAGCTCAAGTCTCCTCTGAGGAAGATTTCACTGGAAAACCT 315
Query 491 GGCCAGTCAACAGTTCTTAGGCTTCCGGGTCTCGGCTCAAAGCGGGTCGGTTTGATTGGT 550
|| || ||||| ||||||||||||||||||||||| |||||||| ||| |||||| |||
Sbjct 316 GGTCAATCAACTGTTCTTAGGCTTCCGGGTCTCGGTTCAAAGCGAATCGCTTTGATCGGT 375
Query 551 CTTGGAAAATCTGCTTCAAC-CCCTTCGGCTTTTCAGAGTCTTGGTGAGGCTGTTGCTGC 609
||||| | |||| |||||| || | ||||||||| || |||||||| ||||| ||| |
Sbjct 376 CTTGGTCAGTCTGTTTCAACTCCGGT-GGCTTTTCATAGCCTTGGTGAAGCTGTAGCTAC 434
Query 610 AGCTGCTAAAGCTTCTCAAGCTAGCAGTGTTGC-AGTTGTTCTCGCCTCCTCTGAGAGTT 668
|| | | |||||||||||| |||| || | ||| | |||| || | || || | |||
Sbjct 435 AGTTTCAAAAGCTTCTCAATCTAGTAGCGCTGCTA-TTGTGCTTG-CT--TC--A-AGTG 487
Query 669 TTTCTGATGAATCTAAGCTCAGTTCTGCTTCAGATATAGCTTCAGGCACAGTGCTTGGTT 728
||||||||||||||||||| |||||||| |||| | |||||||||||| |||||||||||
Sbjct 488 TTTCTGATGAATCTAAGCTTAGTTCTGCATCAGCTTTAGCTTCAGGCATAGTGCTTGGTT 547
Query 729 TGTTTGAAGACAGTCGGTATAAGTCTGAGTCAAAGAAACCATCTCTCAAATCTGTAGTAT 788
|||||||||| || ||||||||||||| ||||||||||||||| | || ||||| | ||
Sbjct 548 TGTTTGAAGATGGTAGGTATAAGTCTGAATCAAAGAAACCATCTTTGAAGTCTGTTG-AT 606
Query 789 -TCATTGGCTTTGGCACTGGACCTGA-ACTAGAGAACAAGCTTAAGTATGCTGAACATGT 846
||||||| ||||| ||||| ||||| | ||||||| ||||| |||||||||||| ||||
Sbjct 607 ATCATTGGATTTGGAACTGGTCCTGAGA-TAGAGAAGAAGCTGAAGTATGCTGAAGATGT 665
Query 847 TTCTTATGGCGTAATTTTCACGAAAGAACTTGTTAATTCACCAGCCAATGTTCTCT-CCC 905
|||||| || || |||||| || |||||| |||||| || |||||||| || | | |
Sbjct 666 TTCTTACGGTGTGATTTTCGGGAGAGAACTCACTAATTCTCCTGCCAATGTGCT-TACTC 724
Query 906 CTGCCGTACTAGCTGAGGAAGCCTCGAATCTGGCTTCCATGTACAGTAATGTCATGACTG 965
|||| ||||||||||||||||| | || ||||||| | ||||||| ||||| | ||||
Sbjct 725 CTGCTGTACTAGCTGAGGAAGCAGCAAAAGTGGCTTCTACGTACAGTGATGTCTTCACTG 784
Query 966 CAAACATCTTGAAAGAGGAGCAATGCA-AAGAATTGAAGATGGGTTCATATCTTGCTGTA 1024
||||||||||||| || |||||||||| || | |||||||||||||| ||||| |||||
Sbjct 785 CAAACATCTTGAACGAAGAGCAATGCAGAA-AGTTGAAGATGGGTTCCTATCTAGCTGTT 843
Query 1025 GCTGCTGCTTCAGCTAATCCACCTCATTTCATCCACCTTATCTACAAACCTTCTAGTGGC 1084
|||||||| || || ||||| ||| |||||||||||||| | || |||||||| ||||||
Sbjct 844 GCTGCTGCCTCGGCGAATCCCCCTTATTTCATCCACCTTGTTTATAAACCTTCCAGTGGC 903
Query 1085 CCTGTTAAAACCAAACTTGCTCTTGTTGGAAAAGGATTGACATTTGACAGCGGTGGCTAC 1144
||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 904 TCTGTTAAGACCAAACTTGCTCTTGTAGGAAAAGGATTGACCTTTGACAGTGGTGGCTAC 963
Query 1145 AACATTAAAATTGGGCCTGAATTAATAATTGAGCTCATGAAAATCGATGTGGGAGGTTCA 1204
|||||||| | ||| || | | ||||||||||||||||| | || |||| || |||
Sbjct 964 AACATTAAGACTGGACCAGGCTGCTTAATTGAGCTCATGAAATTAGACATGGGCGGCTCA 1023
Query 1205 GCTGCTGTTCTTGGCGCTGCAAAAGCCATTGGTGAAATTAAGCCTCCCGGTGTTGAGGTG 1264
|||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||
Sbjct 1024 GCTGCTGTTCTTGGCGCTGCGAAAGCTATTGGTGAGATTAAGCCTCCTGGTGTTGAGGTT 1083
Query 1265 CACTTT-ATTGTCGCAGCTTGTGAGAATATGATAAGTGGTACCGGAATGAGACCTGGAGA 1323
|| ||| || || || || |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1084 CA-TTTCATCGTTGCCGCCTGTGAGAATATGATCAGTGGAACCGGAATGAGACCTGGAGA 1142
Query 1324 TGTCATCACAGCCTCAAACGGGAAGACAATTGAGGTCAACGACACCGATTCTGAAGGTCG 1383
||||||||||||||| ||||| ||||| ||||| |||||| |||| ||| ||||||||||
Sbjct 1143 TGTCATCACAGCCTCGAACGGAAAGACCATTGAAGTCAACAACACAGATGCTGAAGGTCG 1202
Query 1384 GCTAACACTTGCAGATGCTCTAGTTTATGCTTGCAACCAGGGTGTCGATAAGATTGTTGA 1443
|||||||||||||||||||||| ||| |||| |||||||| ||||| |||||||||||
Sbjct 1203 TTTAACACTTGCAGATGCTCTAGTGTATACTTGTAACCAGGGCGTCGACAAGATTGTTGA 1262
Query 1444 CATTGCAACATTGACCGGGGAGAT-TATTGTTGCTCTTGGACCATCAATGGCAGGCATGT 1502
| | || || ||||| |||| | |||| |||||||||| | ||||||||||| || |
Sbjct 1263 CCTCGCTACTTTGACTGGGGCC-TGTATTATTGCTCTTGGGTCTTCAATGGCAGGTATCT 1321
Query 1503 ACACAGCTAGTGATGAGCTTGCCAAGGAGGTAATTGCTGCATCACAGAGGAGTGGAGAGA 1562
| ||| |||| || || ||||| ||||| || |||||||||||| | |||||||||||||
Sbjct 1322 ATACACCTAGCGACGACCTTGCAAAGGAAGTGATTGCTGCATCAGAAAGGAGTGGAGAGA 1381
Query 1563 AGTTATGGAGAATGCCTA-TGGAAGAGAGTTATTGGGAGATGATGAAGTCAGGTGTTGCA 1621
|| | ||||| ||||| | |||||||||| |||||||||||||||||||| || || ||
Sbjct 1382 AGCTGTGGAGGATGCC-ACTGGAAGAGAGCTATTGGGAGATGATGAAGTCTGGAGTGGCT 1440
Query 1622 GATATGGTTAACTTTGGAGGCCGTGCAGGTGGATCCATCACCGCAGCTCTCTTTTTGAAA 1681
|||||||| ||| || || |||||||| || |||||||||||||||||||| ||||||
Sbjct 1441 GATATGGTCAACACAGGCGGGCGTGCAGGAGGTTCCATCACCGCAGCTCTCTTCTTGAAA 1500
Query 1682 CGGTTTGTTAGCGAGAATGTTG-AGTGGTTGCACATAGATATGGCTGGACGGGTGTGGAA 1740
| |||||| || ||||| || | | ||| |||| || || |||||||||| | ||||||
Sbjct 1501 CAGTTTGTGAGTGAGAAGGT-GCAATGGATGCATATCGACATGGCTGGACCAGCGTGGAA 1559
Query 1741 CGAGAAGAAGAAAG-CTGCGACTGGGTTTGGAGTTGCGACACTTGTTGAGTGGGTACAGA 1799
|||||||||||| | ||| |||||||||||| ||||| || |||||||| ||||||||||
Sbjct 1560 CGAGAAGAAGAA-GTCTGGGACTGGGTTTGGTGTTGCTACGCTTGTTGAATGGGTACAGA 1618
Query 1800 ACAATTCTTCTT 1811
| ||||| ||||
Sbjct 1619 AGAATTCATCTT 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75990038775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5