BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30935.1
Length=1637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328625 jgi|Araly1|328625|fgenesh1_pm.C_scaffold_7000852 1947 0.0
> Ahg328625 jgi|Araly1|328625|fgenesh1_pm.C_scaffold_7000852
Length=2313
Score = 1947 bits (1054), Expect = 0.0
Identities = 1280/1385 (92%), Gaps = 32/1385 (2%)
Strand=Plus/Plus
Query 103 ATACAGAAAAAGAGGACAAGAGAGAATCGTCCATGGAAGAAGACACTGGTATCGACGAAG 162
||| ||||||| | ||||| ||||||||||||||||||| | | ||||||||||||||||
Sbjct 112 ATAGAGAAAAA-ACGACAA-AGAGAATCGTCCATGGAAG-A-A-ACTGGTATCGACGAAG 166
Query 163 CTAAGACATACACGGTGGAGAAGAGCGAGAAAGTGGAGCCGGAGAAGGA-C--------G 213
||||| || |||||||||||||||||||||||||||| |||||||||| | |
Sbjct 167 CTAAGGTATGCACGGTGGAGAAGAGCGAGAAAGTGGAGACGGAGAAGGAGCTGGATAATG 226
Query 214 GACTGAGTCAATTCAGAGACGAGGAAAAATCACTTGGTGCG-GATATGGAAGATTTACAT 272
||||||||||| ||||||||||||| ||||||||||| || | | ||||||||||||||
Sbjct 227 GACTGAGTCAACTCAGAGACGAGGAGGAATCACTTGGTACGTG-TGTGGAAGATTTACAT 285
Query 273 GATGAGACTGTGCGAGAAACCCTAGGCAAGGATCAGGTTCAAGGTGTTCGAGAAAATTCC 332
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GATGAGGCTGTGCCAGAAACCCTAGGCAAGGATCAGGTTCAAGGTGTTCGAGAAAATTCG 345
Query 333 TCTGTGGAACCAAATGTTGAAGATGTAT-TAGAAGTGAATGAGACTGATAGCGTCAAGGA 391
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 346 TCTGTGGAACCAAATGTTGAAGATGT-TGGAGAAGTGAATGAGACTGATAGCGTCAAGGA 404
Query 392 AACTGTTGTAAGTGCGATTGTGCCGGTTGATGAAGTGGAAGAGAATCGTCAGGTAGAAAC 451
|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 405 AATTGTCGTAAGTGCGATTGTGCCTGTTGATGAAGTGGAAGAGAATCGTCAGGTAGAAAC 464
Query 452 ATCTCCTTCTCTGGCTGCATCGTCAGACTCATT-GACAGTG-ACGCCATGTCTATCTT-T 508
|||||||||||||||||||||||| || | || ||| ||| | ||||| |||||||| |
Sbjct 465 ATCTCCTTCTCTGGCTGCATCGTCTGA-TGTTTTGACGGTGGA-GCCATCTCTATCTTCT 522
Query 509 --GGATCCTGCAACTGCTTCAACCGCACAAGATTTACCACTGGTTTCAGTTCCAACTAAA 566
||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||
Sbjct 523 TCGGATCCTGCAACTGCTTCAGCTGCACAAGGTTTATCACTGGTTTCAGTTCCAACTAAA 582
Query 567 CAAGAGCAAAGATCAGATTCGCCGGTGGTTAACAGATTGTCGGTTACTCCTGTTCCTAGG 626
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct 583 CAAGAGCAAAGATCAGATTCTCGGGTGGTTAACAGATTGTCGGTTACTCCCATTCCTAGG 642
Query 627 ACACCGGCTCGTGATGGTTATAATTGGAGAAAATATGGACAGAAGCAGGTTAAGAGTCCC 686
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 643 ACACCGGCTCGTGATGGTTACAATTGGAGAAAATATGGACAGAAGCAGGTTAAGAGTCCC 702
Query 687 AAGGGCTCACGGAGTTACTACAGGTGTACATACACTGAATGTTGTGCTaaaaaaaTTGAA 746
||||||||||| || |||||||||||||| || || |||||||||||||| |||||||||
Sbjct 703 AAGGGCTCACGAAGCTACTACAGGTGTACGTATACCGAATGTTGTGCTAAGAAAATTGAA 762
Query 747 TGCTCCAATGATTCAGGCAATGTGGTAGAGATTGTTAACAAAGGTTTACATACTCATGAA 806
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 763 TGCTCCAATGATTCAGGCAATGTGGTAGAGATTGTTAACAAAGGTTTGCATAGTCATGAA 822
Query 807 CCTCCCCGGAAGACTAGCTTCTCCCCGAGAGAGATTAGAGTTACAACAGCTATCCGGCCT 866
||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 823 CCTCCCCGGAAGATTAACTTCTCCCCGAGAGAGACTAGAGTTACAACAGCTATCCAGCCT 882
Query 867 GTTTCAGAGGATGATACAGTAGTAGAAGAGCTATCAATTGTTCCTAGCGGTTCAGATCCG 926
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 883 GTTTCAGAGGATGATACAGTAGTAGAAGAGCTAACAATTGTTCCTAGCGGTTCAGATCCG 942
Query 927 TCTGCTTCTACTAAAGAATACATCTGTGAGTCGCAAACACTCGTTGACCGGAAAAGACAC 986
|||| ||||||||||||| |||| ||||||||||| ||| ||||||| ||||| |||||
Sbjct 943 TCTGTTTCTACTAAAGAAAACATATGTGAGTCGCAGACAATCGTTGAACGGAAGAGACAT 1002
Query 987 TGTGAGAACGAAGCTGTGGAGGAACCAGAGCCAAAACGAAGACTGAAAAAAGATAACTCA 1046
||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 1003 TGTGAGAACGAAGCTGTGGAGGAACCAGAGCCAAAACGAAGGC--AA----GATAACTCA 1056
Query 1047 CAGAGTTCAGATTCTGTCTCCAAACCTGGAAAGAAAAACAAATTCGTAGTACACGCAGCT 1106
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1057 CAAAGTTCAGATTCTGTCTCCAAACCTGGAAAGAAAAATAAATTCGTCGTACACGCAGCT 1116
Query 1107 GGTGATGTTGGTATCTGTGGTGATGGATACAGGTGGCGTAAATACGGGCAGAAAATGGTG 1166
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GGTGATGTTGGGATCTGCGGTGATGGATACAGGTGGCGTAAATACGGGCAGAAAATGGTG 1176
Query 1167 AAAGGAAATCCTCATCCAAGGAACTACTACCGATGCACTTCAGCGGGATGTCCAGTTCGT 1226
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1177 AAAGGAAATCCTCATCCAAGGAACTACTACCGATGTACTTCTGCGGGATGTCCTGTTCGT 1236
Query 1227 AAACACATTGAGACAGCAGTCGAGAACACAAAAGCAGTAATAATCACATACAAAGGAGTA 1286
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1237 AAACACATTGAGACAGCAGTAGAGAACACAACAGCAGTAATAATCACATACAAAGGAGTA 1296
Query 1287 CACAACCACGACATGCCGGTGCCTAAGAAACGCCATGGTCCTCCAAGCTCAATGCTCGTA 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 CACAACCACGACATGCCGGTGCCTAAGAAACGCCATGGTCCTCCAAGCTCAATGCTCGTA 1356
Query 1347 GCTGCAGCCGCTCCAACATCAATGAGAACCAGGACAGACGATCAGGTGAACATTCCGACT 1406
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1357 GCTGCAGCCGCTCCAACGTCAATGAGAACCAGGCCAGACGATCAGGTGAACATTCCCACT 1416
Query 1407 TCAAGCCAGTGCTCGGTGGGGCGAGAAAGTGAGAAGCAGAGTAAAGAAGCATTGGACGTT 1466
|||||||| ||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct 1417 TCAAGCCAATGCTCGGTGGGACGAGAAAGTGAGAAGCAGAGCAGTGAAGCATTGGATGTT 1476
Query 1467 G-GTG 1470
| |||
Sbjct 1477 GTGTG 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61363384695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5