BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30940.1
Length=1954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491654 jgi|Araly1|491654|fgenesh2_kg.7__1087__AT4G30940.1 2567 0.0
> Ahg491654 jgi|Araly1|491654|fgenesh2_kg.7__1087__AT4G30940.1
Length=1799
Score = 2567 bits (1390), Expect = 0.0
Identities = 1582/1675 (94%), Gaps = 11/1675 (1%)
Strand=Plus/Plus
Query 240 AATCATTGATTTCACCTAT-TTTCAGAAATCAGAAATAATGGGTTTATCAAATGACAGGA 298
|||||| |||||||||||| ||||| |||| | | ||||||||||||||||||||||| |
Sbjct 129 AATCATCGATTTCACCTATATTTCATAAATAACAGATAATGGGTTTATCAAATGACAGAA 188
Query 299 TCAAATTCAACGTTGGTGGCAGAATCTTCGAAACGACAGCGACAACGCTCGCTAACGCAG 358
||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |
Sbjct 189 TCAAATTCAACGTTGGTGGTAGAATCTTCGAAACGACGGCGACGACCCTCGCTAACGCTG 248
Query 359 GTCGCGATTCCTTCTTCGGAGCATTATTCGACGAAAATTGGAATCTTTCACAACCCGGGG 418
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 249 GTCGCGGTTCCTTCTTCGGAGCATTATTCGACGAAAATTGGAATCTTTCGCAACCCGACG 308
Query 419 ATCTCTTCATCGATAGGAATCCAGATTGCTTCGCTGTTCTTCTCGATCTTCTCCGAACAG 478
|||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 309 ATCTCTTCATCGATCGGAACCCAGATTGCTTCGCCGTTCTTCTCGATCTCCTCCGAACAG 368
Query 479 GAGACTTAAACATCCCGCCTAATATCCCGGAGCGTCTCCTTCACAAAGAAGCAATGTTCT 538
||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GAGACCTCAACATCCCACCTAATATCCCGGAGCGTCTCCTTCACAAAGAAGCAATGTTCT 428
Query 539 ACGGCTTAATAGACCACTTACGAACCGCAAAGTGGGGACCTTTCGACGGTAACAGACTCC 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ACGGCTTAATCGACCACTTACGAACCGCAAAGTGGGGACCTTTCGACGGTAACAGACTCC 488
Query 599 ACCTATCTCGTTCCGTCACCGGCATAGCTCCTGGAGACGGAACGGCGATAAGAGCTGGTC 658
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 489 ACCTCTCTCGCTCCGTCACCGGCATAGCTCCCGGAGACGGAACGGCGATAAGAGCTGGTC 548
Query 659 CGGATGGTGGATGCTGCATAGCTCATGGGAGTGTCGTCCATGTCTTTGATTGGATGCTTG 718
||||||| |||||||| | ||||| ||||| || ||||| || ||||||||||||||||
Sbjct 549 CGGATGGCGGATGCTGTGTCGCTCACGGGAGCGTTGTCCACGTGTTTGATTGGATGCTTG 608
Query 719 AGGAGCATCCAACGATTAATCTTGATTACCAGAGAGTGAACGATGTTGGTTGGATTGATT 778
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 609 AGGAGCATCCGACGATTAATCTTGATTACCAAAGAGTGAACGATGTGGGTTGGATTGATT 668
Query 779 CTGGTAACATTGTACTCTCTGCTTGTGAGAGATTAGGAAGAGGAGATGGAGGAATGGGAT 838
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CCGGTAACATTGTTCTCTCTGCTTGTGAGAGATTAGGAAGAGGAGATGGAGGAATGGGAT 728
Query 839 TGTTTAGCTCATCTTCTGGTGAGCTTAGGTATAAGTTTCAGGTTAGTCATGATAATCAGG 898
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 729 TGTTTAGCTCATCTTCTGGTGAGCTTAGGTATAAGTTTCAGGTGAGTCATGATAATCAGA 788
Query 899 TTAAGAGTTATAGTGCTGGAGCTTTGAGTTTTAGTCCTGATTCTAAGATCTTTACGAGCT 958
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 789 TTAAGAGTTATAGTGCTGGAGCTTTGAGTTTTAGTCCTGATTCCAAGATCTTTACGAGCT 848
Query 959 GTAAAGGAAGAAGTAATGAGTATGGGATTGGAGTTTGGGATCAAAGTACTGGAAAGCAAG 1018
| ||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 849 GCAAAGGAAGAAGCAATGAGTATGGAATTGGAGTTTGGGATCAAATTAATGGAAAGCAAC 908
Query 1019 TAGATTTCTTTTACGAGAGTCCTGGTTGGTCTTTAGGAGATGCTGATAAGTTGCAATGGT 1078
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 909 TAGATTTCTTTTACGAGAGTCCTGGTTGGTCTTTAGGAGATGCTGATAAGCTGCAATGGT 968
Query 1079 TGAGTGGTAAGAATTGTCTTCTTGTAGCTACTTTGTTTCCAAGGAAAGATAACTGTTATA 1138
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 969 TGAGTGGTAAGAATTGCCTTCTTGTAGCTACTTTGTTTCCAAGGAAAGATAATTGTTATA 1028
Query 1139 TTAGCTTGTTGGATTTCCGAGAGAAGAACATGGTCTGGTCTTGGTCTGATATCGGATTTC 1198
||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 1029 TTAGCTTGTTGGATTTCCGGGACAAGAACATGGTCTGGTCTTGGTCTGATATCGGGTTTC 1088
Query 1199 TTACAATGGCGGAAGAGAAGAGAGTGAGAGACGCGATAGCAATGGAAGAGAGCAATTCGA 1258
|| ||| ||| || ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1089 TTGCAACGGCCGAGGAGAAGAGAGTGAGAGATGCGATAGCCATGGAAGAGAGCAATTCGA 1148
Query 1259 TATGTGTGGTGAATGAGTTTGAAGATCTAGGGTTTATTGATCTGAGGATGGATGGAGGAG 1318
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1149 TTTGTGTGGTGAATGAGTTTGAGGATCTAGGGTTTATTGATCTGAGGATGGATGGAGGAG 1208
Query 1319 GGAGTAGTGTGAGGTGGAGTTCTAGGAGCAGGTTGATGAAAAGCAAGATGCCTGATGAGC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GGAGTAGTGTGAGGTGGAGTTCTAGGAGCAGGTTGATGAAAAGCAAGATGCCTGATGAGC 1268
Query 1379 CTTGTTACCCCAAACTTGCTTTGCATGAAGGCCAGCTCTTCTCGTCTATGAATGATTCCA 1438
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1269 CTTGTTACCCTAAACTTGCTTTGCACGAAGGCCAGCTCTTCTCGTCTATGAATGATTCCA 1328
Query 1439 TCTCTGTGTTTTGTGGATCAGACTGGGTTTTGACTTCTAGGTTGAAAAGAAGCTATGGCG 1498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1329 TCTCTGTGTTTTGTGGATCAGACTGGGTTTTGACTTCTAGGTTGAAAAGAAGCTATGGTG 1388
Query 1499 GCTCCATTTGTGATTTCTCTATTGGTGGGGATAGGTTGTTTGCATTGCACAGTGAGGAGA 1558
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1389 GCTCCATCTGTGATTTCTCCATTGGTGGGGATCGGTTGTTTGCATTGCACAGTGAGGAGA 1448
Query 1559 ATGTGTTTGATGTGTGGGAGACTCTTCCTCCTCCCATCATCTGATTTCACATTTTG-ATA 1617
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1449 ATGTGTTTGATGTGTGGGAGACTCTGCCTCCTCCCATCATCTGATTTCACATTTTGCAAA 1508
Query 1618 TCTTGAGCTTAGTCTGGTCTGTTTCTGTTGCTTCT-GGTTTGCTTCTTTTGTTAATGTTT 1676
||||| |||||||||||||||||||| | ||| | |||||||||||||||||| |||||
Sbjct 1509 TCTTGC-CTTAGTCTGGTCTGTTTCTGCTACTTTTTGGTTTGCTTCTTTTGTTA-TGTTT 1566
Query 1677 TAGGGTTGTTAG-AAAATATATAGGATGAGAGAAATAGCAATAGTCAAGAGAATATAAAC 1735
|||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1567 TAGGGTTGTTAGGAAAAC-TACAGGATGAGAGAAATAGCAATAGTCAAGAGAATATAAAC 1625
Query 1736 ATAGAGAACATGATCATAGACTTTTGTTAGGATTGATATTAATACGATTTTAAGTTTCCA 1795
|||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct 1626 ATAGAGAACATGATCATAGAGTTTTGTTAGAATTGATATTGATACGATTTTAAGTTTCCA 1685
Query 1796 G-TTTCAGGTTGTGTTCTGTTTTGTCCTTATATGACTCTTTCTCAATGTAAAGAA-TTAA 1853
| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 1686 GGTTTCAGGTTGTGTTCTGTTTTGTCCTTACATGACTCTTTCTCAATGTAA-GAAATTAA 1744
Query 1854 TCCTCTTTTGACCTTTAGCTTT-AAGCTCCTTTCATGGTGGTGTGAACTGTGACC 1907
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1745 TCCTCTTTTGACCTTTAGCTTTTAAGCTGCTTTCATGGTGGTGTGAACTGTGACC 1799
Score = 147 bits (79), Expect = 4e-34
Identities = 97/105 (92%), Gaps = 3/105 (3%)
Strand=Plus/Plus
Query 65 AGAGTCCAGATCATCGTATTCAATTTGATT-AATCATAAATCAGATTT-CATTTCGTTAT 122
|||||||||||||||||||||| ||||||| |||||| |||||||||| | |||| ||||
Sbjct 28 AGAGTCCAGATCATCGTATTCACTTTGATTAAATCATTAATCAGATTTCCTTTTC-TTAT 86
Query 123 CCTTTCCCAGGATTCAATTTCTTCGAATCCGATCGAATTTCGAAT 167
|||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 87 CCTTTCCCTGGATTCAGTTTCTTCGAATCCGATCGAATTTCGAAT 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73437992360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5