BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30950.1
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491653 jgi|Araly1|491653|fgenesh2_kg.7__1086__AT4G30950.1 2837 0.0
> Ahg491653 jgi|Araly1|491653|fgenesh2_kg.7__1086__AT4G30950.1
Length=1769
Score = 2837 bits (1536), Expect = 0.0
Identities = 1700/1778 (96%), Gaps = 16/1778 (1%)
Strand=Plus/Plus
Query 1 AAGTCCAATTTGCTGAAGAAGG-TGAAGAGGTGAGGGCTCTTCACAGCCATTCAATCTCA 59
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTCCAATTTTCTCAAGAAGGTTGAAGAGGTGAGGGCTCTTCACAGCCATTCAATCTCA 60
Query 60 TAAGACATATTGCCGGAGAAACTCTCTCGGGGGGTCGCTTCTTCTGCATTTTCT--G--C 115
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| | |
Sbjct 61 TAAAACATATTGCCGGAGAAA--CTCTC-GGGGGTCGCTTCTTCTGCATTTTCTCCGTCC 117
Query 116 T-TCCCAATGGCTTCCAGAATTGCTGATTCTCTCTTCGCCTTCACGGGCCCACAGCAATG 174
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 TGT-CCAATGGCTTCCAGAATTGCTGATTCTCTCTTCGCCTTCACGGGCCCACAACAATG 176
Query 175 TCTTCCTAGGGTTCCTAAGCTTGCTGCTTCTTCTGCTCGTGTTTCTCCTGGTGTATATGC 234
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 177 TCTTCCTAGGGTTCCTAAGCTTGCAG---CTTCTGCTCGTGTTTCTCCTGGTATATATGC 233
Query 235 TGTGAAGCCGATTGATCTTCTGTTAAAAGGACGAACTCATCGAAGTAGAAGATGTGTAGC 294
||||| ||||||||||||||| ||||||||| | || | |||||||||||||||||||||
Sbjct 234 TGTGAGGCCGATTGATCTTCTTTTAAAAGGAAGCACCCGTCGAAGTAGAAGATGTGTAGC 293
Query 295 TCCTGTGAAAAGGAGAATTGGATGTATCAAAGCGGTGGCTGCTCCAGTTGCACCGCCTTC 354
||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 294 TCCTGTGAAAAGGAGGATTGGATGTATCAAAGCGGTGGCTGTTCCAGTCGCACCGCCTTC 353
Query 355 AGCTGACAGTGCAGAAGACAGGGAACAGTTAGCAGAAAGCTATGGATTCAGACAAATTGG 414
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 354 AGCTGACAGTGCAGAAGATAGGGAACAATTAGCAGAAAGCTATGGATTCAAACAAATTGG 413
Query 415 AGAAGATCTTCCTGAGAATGTCACCTTAAAAGATATCATGGATACACTTCCCAAAGAGGT 474
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 AGAAAATCTTCCTGATAATGTCACTTTAAAAGATATCATGGATACACTTCCCAAAGAGGT 473
Query 475 GTTTGAGATTGATGATCTGAAAGCTTTGAAGTCTGTGTTGATATCTGTGACTTCATACAC 534
||| |||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 474 GTTCGAGATTGATGATTTGAAAGCATGGAAGTCTGTGTTGATATCTGTGACTTCTTACAC 533
Query 535 TTTGGGGCTCTTCATGATTGCAAAATCGCCGTGGTATCTGCTACCGTTGGCTTGGGCATG 594
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 534 TTTGGGGCTCTTCATGATTGCAAAAGCGCCGTGGTATCTGCTACCGTTGGCTTGGGCATG 593
Query 595 GACAGGAACTGCAATTACCGGGTTCTTTGTGATAGGTCATGATTGTGCACATAAGTCATT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GACAGGAACTGCAATTACCGGGTTCTTTGTGATAGGTCATGATTGTGCACATAAGTCATT 653
Query 655 TTCAAAGAACAAATTGGTGGAAGACATTGTGGGTACTCTCGCCTTCCTACCACTTGTCTA 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CTCAAAGAACAAATTGGTGGAAGACATTGTGGGTACTCTCGCCTTCCTACCACTTGTCTA 713
Query 715 CCCATATGAGCCATGGCGGTTTAAGCACGACCGCCATCACGCCAAAACCAACATGTTAGT 774
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 714 CCCATATGAGCCTTGGCGGTTTAAGCACGACCGTCATCACGCCAAAACCAACATGTTAGT 773
Query 775 TCATGACACAGCTTGGCAGCCAGTTCCGCCAGAGGAGTTTGAGTCATCACCCGTGATGAG 834
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || |
Sbjct 774 TCATGACACAGCTTGGCAGCCAGTTCCACCAGAGGAGTTTGATTCATCACCCGTGCTGCG 833
Query 835 AAAGGCAATCATTTTTGGATATGGCCCAATTAGACCTTGGTTGTCCATAGCTCACTGGGT 894
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 AAAGGCAATCATTTTTGGATATGGGCCAATTAGACCTTGGTTGTCCATAGCTCACTGGGT 893
Query 895 GAACTGGCACTTCAATCTGAAAAAGTTCAGAGCGAGCGAGGTGAATAGGGTGAAGATAAG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GAACTGGCACTTCAATCTGAAAAAGTTCAGAGCGAGCGAGGTGAATAGGGTGAAGATAAG 953
Query 955 TTTGGCTTGTGTTTTCGCCTTCATGGCCGTTGGGTGGCCACTGATCGTATACAAAGTTGG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TTTGGCTTGTGTTTTCGCCTTCATGGCCGTTGGGTGGCCACTGATCGTATACAAAGTTGG 1013
Query 1015 TATATTGGGATGGGTAAAATTCTGGTTAATGCCATGGTTGGGCTATCACTTCTGGATGAG 1074
| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1014 TTTGTTGGGATGGGTAAAATTCTGGTTAATGCCGTGGTTGGGCTATCACTTCTGGATGAG 1073
Query 1075 CACATTCACAATGGTTCATCATACGGCTCCGCATATACCTTTCAAGCCTGCGGATGAGTG 1134
|||||||||||||||||||||||||||||| || || || ||||||||||||||||||||
Sbjct 1074 CACATTCACAATGGTTCATCATACGGCTCCACACATTCCATTCAAGCCTGCGGATGAGTG 1133
Query 1135 GAACGCGGCTCAGGCCCAGCTGAATGGAACTGTTCATTGTGACTACCCTAGTTGGATTGA 1194
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1134 GAACGCGGCTCAGGCCCAGCTGAATGGAACTGTTCATTGTGATTACCCTAGTTGGATTGA 1193
Query 1195 AATTCTCTGCCATGATATCAACGTTCACATCCCGCATCATATTAGCCCAAGAATACCGAG 1254
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1194 AATTCTCTGCCATGATATCAACGTTCACATCCCGCATCATATCAGCCCAAGAATACCAAG 1253
Query 1255 CTACAATCTCCGTGCAGCTCATGAGTCTATACAAGAGAACTGGGGAAAGTATACAAACTT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CTACAATCTCCGTGCAGCTCATGAGTCTATACAAGAGAACTGGGGAAAGTATACAAACTT 1313
Query 1315 GGCTACATGGAACTGGCGATTGATGAAGACGATAATGACTGTGTGTCATGTCTATGACAA 1374
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1314 GGCTACATGGAACTGGCGCTTGATGAAAACGATAATGACTGTGTGTCATGTCTATGACAA 1373
Query 1375 AGAGGAGAACTACATTCCTTTTGACCGGTTAGCCCCTGAAGAATCTCAGCCAATAACCTT 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGAGGAGAACTACATTCCTTTTGACCGGTTAGCCCCTGAAGAATCTCAGCCAATAACCTT 1433
Query 1435 CCTCAAGAAAGCAATGCCTAACTACACAGCCTGATTCGCCATGGTCTCAAACTAGTCTTT 1494
|||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 1434 CCTCAAGAAAGCAATGCCTAACTACACAGCCTGATTCGCCCTGGTCTCGAACTGGTCTTT 1493
Query 1495 TGAAATCTCAATATCTTTTTGCAGTCGCCGATGTTATATGTAAGCTTTCCAAGCGATGAG 1554
|||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||
Sbjct 1494 TGAAATCTCAATATCTTTTTGCAGTCGCGGATGTTATATGTAAGCTTTTCGAGCGATAAG 1553
Query 1555 CTTCTCTAACACTTCACCAACGCTTTATACTGTTATCTTCTTTCCAATCTTATCAGAAGA 1614
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1554 CTTCTCTAACACTTCACCAACGCTTTATACTGTTATTTT-TTTCCAATCTTATCAGAAGA 1612
Query 1615 GAGAAACTGGTCAAATTATCTCAGCGA-TTGCAATTCTTTTATCAGTTTCTTAGCTATAA 1673
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1613 GAGAAACTGGTCAAATTATCTCAGC-ACTTGCAATTCTTTTATCAGTTTCTTAGCTATAA 1671
Query 1674 GAAGATTGAACAGTCTATATAGTTTGCAATGTACTGTAATGTGATGAAAATTTAGTTGAT 1733
||||||| ||||||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1672 GAAGATTAAACAGTCTACATAGTTTGCAATGTACTGTAGTGTGATGAAAACTTAGTAGAT 1731
Query 1734 GAGAATCTTTGAAGATATAAACATCATCTTCTTACTGT 1771
||||||||||||||||||| ||||||||| ||||||||
Sbjct 1732 GAGAATCTTTGAAGATATATACATCATCTACTTACTGT 1769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66467477525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5