BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30980.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491651 jgi|Araly1|491651|fgenesh2_kg.7__1084__AT4G30980.1 1759 0.0
Ahg481281 jgi|Araly1|481281|fgenesh2_kg.4__341__AT2G24260.1 333 2e-90
Ahg913114 jgi|Araly1|913114|Al_scaffold_0001_3368 124 1e-27
> Ahg491651 jgi|Araly1|491651|fgenesh2_kg.7__1084__AT4G30980.1
Length=1217
Score = 1759 bits (952), Expect = 0.0
Identities = 1148/1238 (93%), Gaps = 31/1238 (3%)
Strand=Plus/Plus
Query 1 AACATTCATTTTCATTCT-C-ACTCCCCACCaaaaaaaaaaaaaaCAGAAGCCATGAACT 58
|||||||||||||||||| | | | | |||| ||||||||| |||||||||||||||
Sbjct 1 AACATTCATTTTCATTCTCCAAAACAAAAACAAACAAAAAAAAATCAGAAGCCATGAACT 60
Query 59 CCTCGTCTCTTCTAACTCCTTCATCATCTCCTTCTCCACATCTTCAATCTCCTGCAACAT 118
| || |||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 61 CTTCCTCTCTTTTAACACCTTCATCATCTTCTTCTCCACATCTCCAATCTCCTGCAACAT 120
Query 119 TCGACCACGATGATTTCCTCCACCACATCTTCTCCTCCACTCCTTGGCCCTCATCCGTTC 178
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 121 TCGACCACGATGATTTCCTCCACCAAATCTTCTCCTCCACTCCTTGGCCCTCCTCCGTCC 180
Query 179 TCGACGACACTCCTCCACCAACTTCCGATTGTGCCCCCGTCACTGGATTCCACCACCACG 238
|||| ||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 181 TCGATGACGCTCCTCCCCCAACTTCCGATTGTGCCGCCGTCACTGGATTTCACCACCACG 240
Query 239 ACGCCGATTCAAGAAACCAGATCACTATGATTCCTTTGTCACATAACCATCCTAATGACG 298
| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 241 ATGCCGATTCAAGAAACCAGATCACTATGATTCCTTTGTCTCATAACCATCATAATGACG 300
Query 299 CTCTCTTCAATGGCTTCTCCACCGGATCTCTCCCTTTCCACCTCCCTCAAGGATCGGGAG 358
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CTCTCTTCAATGGCTTCTCCACCGGATCTCTCCCTTTCCACCTCCCTCAGGGATCGGGAA 360
Query 359 GTCAAACGCAAACGCAGTCGCAGGCGACGGCGTCAGCCACCACCGGTGGTGCAACGGCGC 418
||||||||| || | ||||||||||||| ||| | || ||||||||| | |||| ||
Sbjct 361 GTCAAACGC-AA---A--CGCAGGCGACGGCTTCAACAACTACCGGTGGTACGACGGTGC 414
Query 419 AACCTCAGACAAAGCCTAAAGTCCGAGCTAGGAGAGGTCAAGCCACTGATCCTCACAGTA 478
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 AGCCTCAGACTAAGCCTAAAGTTCGAGCTAGGAGAGGTCAAGCCACTGATCCTCACAGTA 474
Query 479 TCGCCGAACGGTTACGGAGAGAGAGGATAGCGGAAAGAATGAAATCTCTTCAAGAACTTG 538
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 475 TCGCCGAACGGTTACGGAGAGAGAGAATAGCGGAGAGAATGAAATCTCTTCAAGAACTTG 534
Query 539 TCCCTAATGGTAACAAGACAGACAAAGCATCAATGCTCGATGAGATTATCGATTATGTCA 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCCCTAATGGCAACAAGACAGACAAAGCATCAATGCTCGATGAGATTATCGATTATGTCA 594
Query 599 AGTTCTTACAGCTCCAAGTCAAGGTACTAAGCATGAGTAGACTGGGCGGTGCTGCTTCTG 658
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 595 AGTTCTTACAGCTCCAAGTCAAGGTATTAAGCATGAGTAGACTGGGCGGTGCTGCTTCTG 654
Query 659 -CTTCTTCTCAAATCTCTGAGGATGCCGGTGGATCCCACGAAAACACCTCCTCCTCCGGC 717
|| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 TCT-CTTCACAAATCTCTGAGGATGCCGGTGGGTCCCACGAAAACACCTCCTCCTCCGGC 713
Query 718 GAGGCGAAGATGACGGAGCACCAAGTTGCAAAGCTAATGGAAGAGGACATGGGATCAGCC 777
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 714 GAGGCGAAGATGACGGAGCACCAAGTTGCAAAGCTGATGGAAGAGGACATGGGATCGGCC 773
Query 778 ATGCAATATCTACAAGGCAAAGGTCTTTGCCTCATGCCCATCTCGTTAGCCACCACCATC 837
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 774 ATGCAGTATCTACAAGGCAAAGGTCTTTGCCTCATGCCCATCTCTTTAGCCACCACCATC 833
Query 838 TCCACCGCCACGTGTCCTTCTCGTAGCCCCTTCGTTAAAGATACCGGCGTTCCTTTGTCT 897
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 834 TCCACCGCCACGTGTCCTTCCCGTAACCCCTTCGTTAAAGATACCGGCGTTCCTTTGTCT 893
Query 898 CCTAACCTATCCACTACAATAGTTGCTAACGGTAATGGCTCATCGTTGGTCACCGTTAAA 957
||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 894 CCTAACCTATCCACTACAACAGTTGCTAACGGTAATGGTTCTTCGTTGGTCACCGTTAAA 953
Query 958 GACGCTCCCTCCGTTTCCAAGCCGTGATAACGGCCATTTGTCCATTTCATTTTCCCTTTT 1017
|||||||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 954 GACGCTCCCTCCGTTTCCAAGCCGTGATAACGGC-A-------ATTTCGTTTTCCCTTTT 1005
Query 1018 TT-GGGTGGGAAAGAGAGAAAAAAGTTTAGAAGACAAAGACAAGTGGGATAGGTGGTTTT 1076
|| |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1006 TTTGGGTGG-AAAGAGAGAAAAA-GTTTAGAAGACGAAGACAAGTGGGATAGGTGGTTTT 1063
Query 1077 GGTCAAAGTTTAGAAAGAATAAGGTCGTGTTTTCGGATACGACACCGTATTTGCGTACAC 1136
||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||||| |
Sbjct 1064 GGTCAAAGTCTAGAAAGAGTAAGGTTGTGTTTTTGGATACGACACCGTATTTGCGTACGC 1123
Query 1137 TTTGGTTTTCTGTCTTT-ACCTACTACAAACCACCCA-TAAGCACACTCATGTTATCATG 1194
||||||||||||||||| ||||||||||||||||||| || |||||||||||| | |||
Sbjct 1124 TTTGGTTTTCTGTCTTTTACCTACTACAAACCACCCAATA-GCACACTCATGT-A--ATG 1179
Query 1195 tttt--t-ttt-tttttGGTTTATAAAGTTATATCCTT 1228
|||| | ||| ||||||||||||||||||||||||||
Sbjct 1180 TTTTCATGTTTCTTTTTGGTTTATAAAGTTATATCCTT 1217
> Ahg481281 jgi|Araly1|481281|fgenesh2_kg.4__341__AT2G24260.1
Length=1334
Score = 333 bits (180), Expect = 2e-90
Identities = 246/278 (88%), Gaps = 3/278 (1%)
Strand=Plus/Plus
Query 434 CTAAAGTCCGAGCTAGGAGAGGTCAAGCCACTGATCCTCACAGTATCGCCGAACGGTTAC 493
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 452 CTAAAGTCCGAGCTAGGAGAGGTCAAGCAACTGATCCTCATAGTATCGCCGAAAGGTTAC 511
Query 494 GGAGAGAGAGGATAGCGGAAAGAATGAAATCTCTTCAAGAACTTGTCCCTAATGGTAACA 553
| |||||||| || ||||||||||||||| ||||||||||||| || ||||| || || |
Sbjct 512 GAAGAGAGAGAATTGCGGAAAGAATGAAAGCTCTTCAAGAACTCGTTCCTAACGGCAATA 571
Query 554 AGACAGACAAAGCATCAATGCTCGATGAGATTATCGATTATGTCAAGTTCTTACAGCTCC 613
|||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 572 AGACAGACAAGGCATCGATGCTCGATGAGATTATAGATTATGTCAAGTTTTTACAACTCC 631
Query 614 AAGTCAAGGTACTAAGCATGAGTAGACTGGGCGGTGCTGCTTCTGCTTCTTCTCAAATCT 673
||||||||||||| |||||||| ||| |||| ||||||||||| | ||||||||||||||
Sbjct 632 AAGTCAAGGTACTGAGCATGAGCAGATTGGGAGGTGCTGCTTCAGTTTCTTCTCAAATCT 691
Query 674 CTGAGGATGCCGGTGGATCCCACGAAAACACCTCCTCC 711
| |||| || | ||||||||||| ||| | ||||||
Sbjct 692 CCGAGGCTG--G-TGGATCCCACGGGAACGCATCCTCC 726
> Ahg913114 jgi|Araly1|913114|Al_scaffold_0001_3368
Length=327
Score = 124 bits (67), Expect = 1e-27
Identities = 91/102 (89%), Gaps = 4/102 (4%)
Strand=Plus/Minus
Query 112 GCAACATTCGACCACGATGATTTCCTCCACCACATCTTCTCCTCCACTCCTTGGCCCTCA 171
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 324 GCAACATTCGACCACGATGACTTCCTCCACCACATCTTCTCCTCCACTCCTTGGCCCTCC 265
Query 172 TCCGTTCTCGACGAC-ACTCCTCCACC-AACTTCCGATTGTG 211
||| | |||| ||| | ||||| ||| ||||| ||||||||
Sbjct 264 TCCATCCTCGGTGACGA-TCCTC-ACCCAACTTTCGATTGTG 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5