BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30993.2
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353720 jgi|Araly1|353720|fgenesh1_pg.C_scaffold_7000893 1158 0.0
Ahg895396 jgi|Araly1|895396|Al_scaffold_0006_3392 381 9e-105
Ahg338750 jgi|Araly1|338750|fgenesh1_pg.C_scaffold_2000849 381 9e-105
Ahg936669 jgi|Araly1|936669|scaffold_500860.1 143 4e-33
> Ahg353720 jgi|Araly1|353720|fgenesh1_pg.C_scaffold_7000893
Length=8568
Score = 1158 bits (627), Expect = 0.0
Identities = 717/760 (94%), Gaps = 8/760 (1%)
Strand=Plus/Plus
Query 237 GACGACGGTGACAATGCCACACCTCTAGATCTTCATTTCATCTCCGT-TGCCGGCGGTTT 295
||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||
Sbjct 7813 GACGACGGTGACAATGCCACACCTCTAGATCTTCATTTCATTTCCGTCT-CCGGAGGTTT 7871
Query 296 CAGGCCTCTTAACCACCAAACTCGCCTTCTCCGATTGATGGAGAAAGTTGCAGAAACTTA 355
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7872 CAGGCCTCTTCACCACCAAACTCGCCTTCTCCGATTGATGGAGAAAGTTGCAGAAACTTA 7931
Query 356 CAAGGCCAAATTTGTTG-TGAGCTCAAGTGAACAAGGAGAAGAAGATCCATTCCTGCAAA 414
|||||| |||||||| | |||||||||||||||| |||||| ||||| || |||||||||
Sbjct 7932 CAAGGCAAAATTTGT-GCTGAGCTCAAGTGAACATGGAGAACAAGATTCACTCCTGCAAA 7990
Query 415 ATGCGACTCGACTGTCTTCTTCACTGAAACTTCCATGGTACACTAGAATGAAAGGATCTG 474
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 7991 ATGCGACTCGGCTGTCTTCTTCACTGAAACTTCCATGGTACACTAGAAGGAAAGGATTTG 8050
Query 475 GATATTTCAGAGAGCACATCAAAATGCCTTTTGGTGGATCCTTGGATGTTGTTTTCGTAG 534
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 8051 GATATTTCAGAGAGCACATCAAAATGCCTTTTGATGGATCCTTGGATCTTGTTTTCGTAG 8110
Query 535 ACACTGGCTCACT-CAAGCAGGAAGTGCTTGGTGGAGCAGTGAATGCCTATATGATCAGT 593
||||||||||||| || |||||||||||||||||||||| |||||| || ||||||||||
Sbjct 8111 ACACTGGCTCACTGCA-GCAGGAAGTGCTTGGTGGAGCATTGAATGGCTCTATGATCAGT 8169
Query 594 CAATTGAAAGGGTTGACAAGGATTCTAAAAGCAGTAGACGGAGACTGGCGTATTGTGGTT 653
||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 8170 CAATTGAAAGGGTTGGCAAGGATTCTGAAAGCAGTAGATGGAGACTGGCGTATTGTGGTT 8229
Query 654 GGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGAACCAGAGGAACCTAAGAGAGTG 713
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 8230 GGATCAGACCCGTTACTCGCCAATACTCTAACTAAGGAACCAGAGGAATCTAAGAGAGTT 8289
Query 714 GCAAGGACATTTCATCAAATCATGACCAAATATGGAGTGAACTTATATATAAGCGAAAAA 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 8290 GCAAGGACATTTCATCAAATCATGACCAAATATGGAGTGAACTTATATATAAGCAAAAAA 8349
Query 774 GGCTGCACAAGGGGAGGCAGCAACGAGAGCTTGACTTGCATTACGGTTCCTAATCAACAA 833
|||||||| || ||||||| ||||||| |||| |||||||||| ||| |||||||||| |
Sbjct 8350 GGCTGCACCAGCGGAGGCAACAACGAGGGCTTCACTTGCATTATGGTCCCTAATCAACCA 8409
Query 834 GAGAACCAAGGTCCAACGAATAATAGTAAGAGAGAAAGGGAAGATGGGTTTCTTCTTCAC 893
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 8410 GAGAATCAAGGTCCAACGAATGATAGTAAGAGAGAAAGGGAAGATGGGTTTCTTCTTCAC 8469
Query 894 AGAGTTAGCTTCTCAGAGTTTGTTACTTATACTATCAACTCATCAGGAG-AAGTCATTGA 952
||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||
Sbjct 8470 AGAGTTAGCTTCTCAGAATTTGTTACTTATACTATCAACTCATCTGG-GCAAGTCATTGA 8528
Query 953 CACAAAATTAGTTAAGCAGAAAGGCAAAGAGACCATCTAA 992
||||||||||||||||||||||||||||||||||||||||
Sbjct 8529 CACAAAATTAGTTAAGCAGAAAGGCAAAGAGACCATCTAA 8568
> Ahg895396 jgi|Araly1|895396|Al_scaffold_0006_3392
Length=357
Score = 381 bits (206), Expect = 9e-105
Identities = 275/307 (90%), Gaps = 10/307 (3%)
Strand=Plus/Plus
Query 451 GGTACACTAGAATGAAAGGATCTGGATATTTCAGAGAGCACATCAAAATGCCTTTTGGTG 510
|||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 44 GGTACAATAGAAAGAAAGGATTTGGATATTTCAGAGAGCGCATCACAATGCCTTTTGGTG 103
Query 511 GATCCTTGGATGTTGTTTTCGTAGACACTGGCTCACTCA-AGCAGGAAGTGCTTGGTGGA 569
||||||||||||||||||| ||||||||||||||| | | ||||||||||||| ||||||
Sbjct 104 GATCCTTGGATGTTGTTTTTGTAGACACTGGCTCA-TTACAGCAGGAAGTGCTCGGTGGA 162
Query 570 GCAGTGAATG-CCT-ATATGATCAGTCAATTGAAAG-GGTTGACAAGGATTCTAAAAGCA 626
||| |||| | || | | |||||||||| |||||| || ||||||||||||||||||
Sbjct 163 GCATTGAA-GAGCTCA-AGGATCAGTCAACTGAAAGAACTT-ACAAGGATTCTAAAAGCA 219
Query 627 GTAGACGGAGACTGGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACT 686
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GCAGATGGAGACTGGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACT 279
Query 687 AAGGAACCAGAGGAA-CCTAAGAGAGTGGCAAGGACATTTCATCAAATCATGACCAAATA 745
|||||| |||||||| || ||| || | ||||| |||||| |||||||||||||||||||
Sbjct 280 AAGGAAGCAGAGGAAGCC-AAGGGAATTGCAAGCACATTTGATCAAATCATGACCAAATA 338
Query 746 TGGAGTG 752
|||||||
Sbjct 339 TGGAGTG 345
> Ahg338750 jgi|Araly1|338750|fgenesh1_pg.C_scaffold_2000849
Length=1413
Score = 381 bits (206), Expect = 9e-105
Identities = 275/307 (90%), Gaps = 10/307 (3%)
Strand=Plus/Plus
Query 451 GGTACACTAGAATGAAAGGATCTGGATATTTCAGAGAGCACATCAAAATGCCTTTTGGTG 510
|||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 98 GGTACAATAGAAAGAAAGGATCTGGATATTTCAGAGAGCGCATCACAATGCCTTTTGGTG 157
Query 511 GATCCTTGGATGTTGTTTTCGTAGACACTGGCTCACTCA-AGCAGGAAGTGCTTGGTGGA 569
||||||||||||||||||| ||||||||||||||| | | ||||||||||||| ||||||
Sbjct 158 GATCCTTGGATGTTGTTTTTGTAGACACTGGCTCA-TTACAGCAGGAAGTGCTCGGTGGA 216
Query 570 GCAGTGAATG-CCT-ATATGATCAGTCAATTGAAAG-GGTTGACAAGGATTCTAAAAGCA 626
||| |||| | || | | |||||||||| |||||| || ||||||||||||||||||
Sbjct 217 GCATTGAA-GAGCTCA-AGGATCAGTCAACTGAAAGAACTT-ACAAGGATTCTAAAAGCA 273
Query 627 GTAGACGGAGACTGGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACT 686
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 274 GCAGATGGAGACTGGCGTATTGTGGTTGGATCAGACCCGTTACTCGCCTATAATCTAACT 333
Query 687 AAGGAACCAGAGGAA-CCTAAGAGAGTGGCAAGGACATTTCATCAAATCATGACCAAATA 745
|||||| |||||||| || ||| || | ||||| |||||| |||||||||||||||||||
Sbjct 334 AAGGAAGCAGAGGAAGCC-AAGGGAATTGCAAGCACATTTGATCAAATCATGACCAAATA 392
Query 746 TGGAGTG 752
|||||||
Sbjct 393 TGGAGTG 399
> Ahg936669 jgi|Araly1|936669|scaffold_500860.1
Length=478
Score = 143 bits (77), Expect = 4e-33
Identities = 96/105 (91%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 649 TGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGAACCAGAGGAA-CCTAAG 707
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 343 TGGTTGGATCAGACCCGTTACTCGCCTATACTCTAACTAAGGAAGCAGAGGAAGCC-AAG 401
Query 708 AGAGTGGCAAGGACATTTCATCAAATCATGACCAAATATGGAGTG 752
|| | || || |||||| ||||||||||||||||||||||||||
Sbjct 402 GGAATTGCGAGCACATTTGATCAAATCATGACCAAATATGGAGTG 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5