BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30996.1
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491646 jgi|Araly1|491646|fgenesh2_kg.7__1079__AT4G30996.1 1240 0.0
> Ahg491646 jgi|Araly1|491646|fgenesh2_kg.7__1079__AT4G30996.1
Length=895
Score = 1240 bits (671), Expect = 0.0
Identities = 848/925 (92%), Gaps = 46/925 (5%)
Strand=Plus/Plus
Query 1 GTCGTTTTATTGTAGTTTCTCCGCGTTTGGTACATCAACACTTGTAGCTGTGTATCTTTC 60
||||||||| |||||||||||||||||||||||||| || | | || ||
Sbjct 1 GTCGTTTTACTGTAGTTTCTCCGCGTTTGGTACATC-AC-C----A-CT-TG-------- 44
Query 61 TAATTCTTCCTTTCTTTCGCTGACAGTG-CTTGCTCACACACTAATCGCAATTGTTGCTG 119
||||||||| |||||||||||||||||| ||| || ||||||||||| | ||||||||||
Sbjct 45 TAATTCTTCGTTTCTTTCGCTGACAGTGTCTT-CTTACACACTAATCACCATTGTTGCTG 103
Query 120 CA-TTGCCGACTCTGATTCGTTCGATTTCAGCATTTTGTTCTTCCGAAGCGATGCCTCGT 178
|| || |||| | || ||| |||||||||||||||||||||| ||||| |||||
Sbjct 104 CACTT-CCGA--C----TC---CGA-TTCAGCATTTTGTTCTTCCGAAACGATGGCTCGT 152
Query 179 CGATCCGGAGATTGCATGAGATGTCTGGTGATTTTCGCGGTTGTATCAGCTTTAGTTGTG 238
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 CGATCTGGAGATTGCATGAGATGTCTGGTGATTTTCGCGGTTGTATCAGCTTTAGTTGTG 212
Query 239 TGTGGACCTGCTCTTTATTGGAAATTCAACAAGGGTTTCGTTGGATCCACACGTGCCAAC 298
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 213 TGTGGACCTGCTCTTTATTGGAAATTCAACAAGGGTTTCGTTGGATCCACTCGTACCAAC 272
Query 299 TCTCTTTGTCCTCCTTGCGTTTGTGATTGTCCTCCTCCTTTGTCTCTTCTCCAGATTGCT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TCTCTTTGTCCTCCTTGCGTTTGTGATTGTCCTCCTCCTTTGTCTCTTCTCCAGATTGCT 332
Query 359 CCTGGGCTCGCAAATCTCTCTATTACAGATTGTGGAAGCGACGATCCAGAGCTTAAACAA 418
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 333 CCTGGGCTTGCAAATCTCTCTATTACAGATTGTGGAAGCGACGATCCAGAGCTCAAACAA 392
Query 419 GAGATGGAGAAGCAATTTGTGGACCTTCTGACTGAGGAGCTGAAGCTGCAAGAAGCAGTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GAGATGGAGAAGCAATTTGTGGACCTTCTGACTGAGGAGCTGAAGCTGCAAGAAGCAGTT 452
Query 479 GCAGATGAGCATAGCCGTCATATGAATGTTACCCTTGCAGAAGCTAAAAGGGTTGCATCT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GCAGATGAGCATAGCCGTCATATGAATGTTACCCTTGCAGAAGCTAAAAGGGTTGCATCT 512
Query 539 CAGTATCAAAAGGAGGCTGAGAAGTGCAATGCCGCCACTGAGATTTGTGAATCAGCTAGA 598
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 CAGTACCAAAAGGAGGCTGAGAAGTGCAATGCCGCCACTGAGATTTGTGAATCAGCTAGA 572
Query 599 GAGAGAGCTGAAGCTTTGTTGATCAAGGAGAGGAAGATTACTTCTTTGTGGGAGAAGAGA 658
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 573 GAGAGAGCCGAAGCTTTGTTGATCAAGGAGAGGAAGATCACTTCTTTGTGGGAGAAGAGA 632
Query 659 GCTCGGCAATCAGGTTGGGAAGGTGAGTAAACTGATTGCACTTCTCAGTCTACCTTAAAG 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 633 GCTCGGCAATCAGGTTGGGAAGGTGAGTAAACTGATTGCACTTCTCAGTCTACCTTGAAG 692
Query 719 TGTTTCTCTCTGAGAAATCGAATTGTCACAGCTCTA---AA--A--GGAAATTGTTTAGT 771
||||||||||||||| ||||||| || || ||||| || | |||||||||||| |
Sbjct 693 AGTTTCTCTCTGAGAAGTCGAATTTTCGCAACTCTACTCAAGTAAAGGAAATTGTTTAAT 752
Query 772 TGTCAAGGCAAAGTCCTATCTTCCACGTTTCTCTATATACAGTATGTAGTTTTTT-GTTT 830
|||||||||||||| |||||||||||||||||||||||| ||| || |||||| ||||
Sbjct 753 TGTCAAGGCAAAGTTCTATCTTCCACGTTTCTCTATATAT-GTA-GTTTTTTTTTTGTTT 810
Query 831 TGCCCTTG-ATCGGAATGTAGCTAAAGAAAGGC----C-TTGTATCAACTTTTATTCATA 884
|||||||| ||| |||||||||||||||||||| | |||||| ||||||| ||||||
Sbjct 811 TGCCCTTGGATCAGAATGTAGCTAAAGAAAGGCTTGGCCTTGTATTAACTTTTCTTCATA 870
Query 885 TATAATTGTCCATTTCTTTACTATG 909
||||||||||||||||| ||| |||
Sbjct 871 TATAATTGTCCATTTCTCTACCATG 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33776904462
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5