BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30996.1 Length=911 Score E Sequences producing significant alignments: (Bits) Value Ahg491646 jgi|Araly1|491646|fgenesh2_kg.7__1079__AT4G30996.1 1240 0.0 > Ahg491646 jgi|Araly1|491646|fgenesh2_kg.7__1079__AT4G30996.1 Length=895 Score = 1240 bits (671), Expect = 0.0 Identities = 848/925 (92%), Gaps = 46/925 (5%) Strand=Plus/Plus Query 1 GTCGTTTTATTGTAGTTTCTCCGCGTTTGGTACATCAACACTTGTAGCTGTGTATCTTTC 60 ||||||||| |||||||||||||||||||||||||| || | | || || Sbjct 1 GTCGTTTTACTGTAGTTTCTCCGCGTTTGGTACATC-AC-C----A-CT-TG-------- 44 Query 61 TAATTCTTCCTTTCTTTCGCTGACAGTG-CTTGCTCACACACTAATCGCAATTGTTGCTG 119 ||||||||| |||||||||||||||||| ||| || ||||||||||| | |||||||||| Sbjct 45 TAATTCTTCGTTTCTTTCGCTGACAGTGTCTT-CTTACACACTAATCACCATTGTTGCTG 103 Query 120 CA-TTGCCGACTCTGATTCGTTCGATTTCAGCATTTTGTTCTTCCGAAGCGATGCCTCGT 178 || || |||| | || ||| |||||||||||||||||||||| ||||| ||||| Sbjct 104 CACTT-CCGA--C----TC---CGA-TTCAGCATTTTGTTCTTCCGAAACGATGGCTCGT 152 Query 179 CGATCCGGAGATTGCATGAGATGTCTGGTGATTTTCGCGGTTGTATCAGCTTTAGTTGTG 238 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 153 CGATCTGGAGATTGCATGAGATGTCTGGTGATTTTCGCGGTTGTATCAGCTTTAGTTGTG 212 Query 239 TGTGGACCTGCTCTTTATTGGAAATTCAACAAGGGTTTCGTTGGATCCACACGTGCCAAC 298 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 213 TGTGGACCTGCTCTTTATTGGAAATTCAACAAGGGTTTCGTTGGATCCACTCGTACCAAC 272 Query 299 TCTCTTTGTCCTCCTTGCGTTTGTGATTGTCCTCCTCCTTTGTCTCTTCTCCAGATTGCT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 273 TCTCTTTGTCCTCCTTGCGTTTGTGATTGTCCTCCTCCTTTGTCTCTTCTCCAGATTGCT 332 Query 359 CCTGGGCTCGCAAATCTCTCTATTACAGATTGTGGAAGCGACGATCCAGAGCTTAAACAA 418 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 333 CCTGGGCTTGCAAATCTCTCTATTACAGATTGTGGAAGCGACGATCCAGAGCTCAAACAA 392 Query 419 GAGATGGAGAAGCAATTTGTGGACCTTCTGACTGAGGAGCTGAAGCTGCAAGAAGCAGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 393 GAGATGGAGAAGCAATTTGTGGACCTTCTGACTGAGGAGCTGAAGCTGCAAGAAGCAGTT 452 Query 479 GCAGATGAGCATAGCCGTCATATGAATGTTACCCTTGCAGAAGCTAAAAGGGTTGCATCT 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 GCAGATGAGCATAGCCGTCATATGAATGTTACCCTTGCAGAAGCTAAAAGGGTTGCATCT 512 Query 539 CAGTATCAAAAGGAGGCTGAGAAGTGCAATGCCGCCACTGAGATTTGTGAATCAGCTAGA 598 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 CAGTACCAAAAGGAGGCTGAGAAGTGCAATGCCGCCACTGAGATTTGTGAATCAGCTAGA 572 Query 599 GAGAGAGCTGAAGCTTTGTTGATCAAGGAGAGGAAGATTACTTCTTTGTGGGAGAAGAGA 658 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 573 GAGAGAGCCGAAGCTTTGTTGATCAAGGAGAGGAAGATCACTTCTTTGTGGGAGAAGAGA 632 Query 659 GCTCGGCAATCAGGTTGGGAAGGTGAGTAAACTGATTGCACTTCTCAGTCTACCTTAAAG 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 633 GCTCGGCAATCAGGTTGGGAAGGTGAGTAAACTGATTGCACTTCTCAGTCTACCTTGAAG 692 Query 719 TGTTTCTCTCTGAGAAATCGAATTGTCACAGCTCTA---AA--A--GGAAATTGTTTAGT 771 ||||||||||||||| ||||||| || || ||||| || | |||||||||||| | Sbjct 693 AGTTTCTCTCTGAGAAGTCGAATTTTCGCAACTCTACTCAAGTAAAGGAAATTGTTTAAT 752 Query 772 TGTCAAGGCAAAGTCCTATCTTCCACGTTTCTCTATATACAGTATGTAGTTTTTT-GTTT 830 |||||||||||||| |||||||||||||||||||||||| ||| || |||||| |||| Sbjct 753 TGTCAAGGCAAAGTTCTATCTTCCACGTTTCTCTATATAT-GTA-GTTTTTTTTTTGTTT 810 Query 831 TGCCCTTG-ATCGGAATGTAGCTAAAGAAAGGC----C-TTGTATCAACTTTTATTCATA 884 |||||||| ||| |||||||||||||||||||| | |||||| ||||||| |||||| Sbjct 811 TGCCCTTGGATCAGAATGTAGCTAAAGAAAGGCTTGGCCTTGTATTAACTTTTCTTCATA 870 Query 885 TATAATTGTCCATTTCTTTACTATG 909 ||||||||||||||||| ||| ||| Sbjct 871 TATAATTGTCCATTTCTCTACCATG 895 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33776904462 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5