BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31010.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491644 jgi|Araly1|491644|fgenesh2_kg.7__1077__AT4G31010.1 2346 0.0
> Ahg491644 jgi|Araly1|491644|fgenesh2_kg.7__1077__AT4G31010.1
Length=1481
Score = 2346 bits (1270), Expect = 0.0
Identities = 1413/1481 (95%), Gaps = 13/1481 (1%)
Strand=Plus/Plus
Query 5 TCTTTCCGATTTCTTCTTCAGTCTCTCTCCAC----TGGTTCGTCGACTTCGTAGAAGCA 60
||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 1 TCTTTCCGATTTCTTCTTCTGTCTCTCTCTACTTGGTGGTTCGTCGACTTCGTAGAAGCA 60
Query 61 AAAAATGTTCTTGATTCGTCTCTCCCGCCATAACCCATCATCTTTTACACTTCTCACGCG 120
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 61 AAATATGTTCTTGATTCGTCTCTCCCGCCATAATCCATCCTCTTTTACACTTCTCACGCG 120
Query 121 CCGCCTTCACGACCAAACAATTTCCTCGTCACGACTCCGAGACCTTTACAATTTTCAATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGCCTTCACGACCAAACAATTTCCTCGTCACGACTCCGAGACCTTTACAATTTTCAATC 180
Query 181 ACCGCCGCCT---TTGTCGTCGTCAGCCTCCGAAAATCCTGACTTTAACCAGAAAAACAA 237
|||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 181 ACCGGCGCCTCCGTTGTCGTCGTCAGCCTCTGAAAATCCTGACTTTAACCAGAAGAACAA 240
Query 238 CAATAAGAAGAAGCCAAAGCCGCAGTACCGTCCACCTTCTTCGCTGGAAGGTGTGAAGAC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAATAAGAAGAAGCCAAAGCCGCAGTACCGTCCACCTTCTTCGCTGGAAGGTGTGAAGAC 300
Query 298 GGTTCACTCTGATCTTCCGTTCGATTTCCGGTTCAGTTACACAGAGAGTTGCTCAAATGT 357
||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 301 GGTTCACTCTGATCTTCCGTTTGATTTCCGGTTCAGTTACACAGAGAGTAGTTCAAATGT 360
Query 358 GAGGCCAATTGGCTTGAGAGAACCAAAGTATTCACCTTTTGGTCCTGATCGATTGGACCG 417
||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 361 GAGGCCAATTGGCTTGAGAGAGCCCAAGTATTCACCTTTTGGTCCTGACCGGTTGGACCG 420
Query 418 GGAATGGACCGGTGTCTGTGCGCCGGCGGTTAATCCAAAGGTAGAGTCTGTTGACGGAGT 477
||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 421 GGAATGGACTGGTGTCTGTGCACCGGCGGTTGATCCAAAGGTAGAGTCTGTGGACGGAGT 480
Query 478 GGAGGATCCGAAGCTGGAAGAGAAAAGAAGGAAAGTGAGAGAGAAGATTCAAGGGGCATC 537
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 GGAGGATCCCAAGCTGGAAGAGAAAAGAAGGAAAGTGAGAGAGAAGATCCAAGGGGCATC 540
Query 538 ACTCACTGAAGCTGAAAGGAAATTTCTGGTGGAGCTGTGTCAGAGGAACAAAACTAAAAG 597
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 ACTCACTGAAGCTGAAAGGAAATTTCTGGTGGAGCTGTGCCAGAGGAACAAAACTAAAAG 600
Query 598 ACAAGTCAATCTTGGGCGAGATGGTTTGACTCATAATATGCTGAATGATGTCTATAATCA 657
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 601 ACAAGTCAATCTTGGGCGAGATGGTTTGACTCACAATATGCTGAATGATATCTATAATCA 660
Query 658 TTGGAAACATGCTGAAGCAGTTCGGGTCAAATGTCTTGGAGTCCCAACCCTCGATATGAA 717
|||||||||||||||||| || |||||||||||||| |||||||| || |||||||||||
Sbjct 661 TTGGAAACATGCTGAAGCGGTACGGGTCAAATGTCTCGGAGTCCCGACTCTCGATATGAA 720
Query 718 GAACGTTATATTCCACCTTGAGGACAAAACGTTTGGCCAGGTAGTCTCTAAACACTCTGG 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GAACGTTATATTCCACCTTGAGGACAAAACGTTTGGCCAGGTAGTCTCTAAACACTGTGG 780
Query 778 TACACTTGTGTTATATAGAGGGCGAAACTACGATCCCAAGAAAAGGCCTAAGATCCCATT 837
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TACTCTTGTGTTATATAGAGGGCGAAACTACGATCCCAAGAAAAGGCCTAAGATCCCATT 840
Query 838 GATGTTGTGGAAACCTCATGAACCAGTGTACCCTAGGCTGATTAAAACAACAATTGATGG 897
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 841 GATGTTGTGGAAACCTCATGAACCTGTGTATCCTAGGCTGATTAAAACAACAATTGATGG 900
Query 898 TCTAAGCATCGATGAGACCAAAGCAATGAGAAAGAAAGGGCTAGCTGTTCCTGCCTTGAC 957
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 901 TCTAAGCATTGATGAGACCAAAGCAATGAGAAAGAAAGGGCTAGCGGTTCCTGCCCTGAC 960
Query 958 AAAACTTGCCAAGAATGGTTATTACGGTAGTCTTGTTCCAATGGTGAGAGATGCTTTCCT 1017
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAACTCGCCAAGAATGGTTATTACGGTAGTCTTGTTCCAATGGTGAGAGATGCTTTCCT 1020
Query 1018 CGTGAGTGAATTAGTACGTATTGATTGCTTGGGACTAGAGAGAAAGGATTACAAGAAAAT 1077
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1021 CGTGAGTGAATTGGTACGGATTGATTGCTTGGGACTAGATAGAAAGGATTACAAGAAAAT 1080
Query 1078 TGGAGCAAAGCTTAGGGATTTGGTCCCTTGCATCCTGGTGACATTTGACAAGGAGCAGGT 1137
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 TGGAGCAAAGCTTAGGGATTTGGTCCCTTGCATCCTGGTGACATTTAACAAGGAGCAGGT 1140
Query 1138 CGTGATTTGGAGAGGTAAAGACTATAAGCCACCCAAAGAAGATGATGAATATTCGTCCTT 1197
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1141 CGTGATTTGGAGAGGTAAAAACTATAAGCCACCCAAAGACGATGATGAATATTCGTCCTT 1200
Query 1198 CATTCATCGTGAATCTTCCATAGACTCTGATGTCGATTTAAGTTGTAGCAGAGGGGCTCA 1257
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1201 CATTCATCGTGAATCTTCCATAGACTCCGATGGCGATTTAAGTTGTAGCAGAGGGGCTCA 1260
Query 1258 AGATTCTCCTGACGAGACAACC------TAGGATGATTTAGTACTCTTGATCCCAGATGT 1311
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1261 AGATTCTCCAGACGAGACAACCAGAACCTAGGATGATTTAGTACTCTTGATCCCAGATGT 1320
Query 1312 ATAGTTATAATGTGAGAGTATTTTGTGGTAATGTACTTAATTGTCTCGCTAAGGAGCACT 1371
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||
Sbjct 1321 ATAGTTATAATGTGAGAGTAATTTGTGGTAATGTACTTATTTGTCTCGCTAAGGAACACT 1380
Query 1372 AGATAGTTCGAAGGAAATGCTGATTACATCTTTTCTGTGTTGCTTCTCCTACAAGTAATG 1431
|||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1381 AGATAGGTCGAAGAAAATGCTGATTACATCTTTTCTATGTTGCTTCTCCTACAAGTAATG 1440
Query 1432 ATGTGTTACAGAAACCCCCAAACTTGAAGCTACATTTTTAC 1472
|||||||||||||||||||||||||| |||||||||||||
Sbjct 1441 ATGTGTTACAGAAACCCCCAAACTTGGTGCTACATTTTTAC 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5