BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31020.2
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328615 jgi|Araly1|328615|fgenesh1_pm.C_scaffold_7000842 1458 0.0
Ahg491644 jgi|Araly1|491644|fgenesh2_kg.7__1077__AT4G31010.1 292 4e-78
> Ahg328615 jgi|Araly1|328615|fgenesh1_pm.C_scaffold_7000842
Length=885
Score = 1458 bits (789), Expect = 0.0
Identities = 853/885 (96%), Gaps = 0/885 (0%)
Strand=Plus/Plus
Query 69 ATGGGTAATGTGACGTCAAATGTGGCGGCCAAGTTCGCATTCTTCCCGCCGGAGCCAGCA 128
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTAATGTGACGTCAAATGTGGCGGCCAAGTTTGCATTCTTCCCGCCGGAGCCAGCA 60
Query 129 ACATACGGCGTAACGAAGGATGACGAGACCGGGAAGCTGGTCTTCGCCGGAGTGTCGGCT 188
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ACATACGGCGTAACGAAGGATGACGAGACAGGGAAGCTGGTCTTCGCCGGAGTGTCGGCG 120
Query 189 GACAAGAACGTGGAAGTCCACCAACTCACCACAAAGTCCGGCAACAAAGTTGTTGCCACG 248
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 121 GACAAGAACGTGGAAATCCACCAGCTCACCACAAAGTCCGGTAACAAAGTTGTTGCCACG 180
Query 249 TTTTGGAGACACCCTTTTGCGAGATTCACGCTTCTCTATTCCCATGGCAATGCCGCTGAT 308
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 181 TTCTGGAGACACCCTTTTGCGAGATTCACGCTTCTCTATTCCCATGGTAATGCTGCTGAT 240
Query 309 CTTGGCCAAATGGTCGAGCTATTCATCGAACTCCGTGCTCATCTCCGCGTCAACATCATG 368
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 241 CTTGGCCAAATGGTCGAGCTCTTCATCGAGCTCCGTGCTCATCTACGCGTCAACATCATG 300
Query 369 AGTTATGATTATTCAGGATATGGAGCTTCAACAGGAAAGCCGTCTGAATTCAACACGTAT 428
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AGTTATGATTATTCAGGCTATGGAGCTTCAACAGGAAAGCCGTCTGAATTCAACACATAT 360
Query 429 TATGACATAGAGGCAGTGTACAGTTGCTTGCGGAGCGATTATGGGATCAAGCAAGAGGAG 488
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 361 TATGACATAGAGGCAGTGTACAATTGCTTGAGGAGCGATTATGGGATCAAGCAAGAGGAG 420
Query 489 ATAATTCTGTACGGTCAGTCTGTAGGAAGCGGTCCAACGTTGCACATGGCTTCTCGGTTG 548
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 ATTATTCTGTACGGACAGTCTGTAGGAAGCGGTCCAACATTGCACATGGCTTCTCGGTTG 480
Query 549 AAGAGGCTTAGAGGAGTTGTTCTTCACAGCGCCATTCTCTCTGGAATCAGAGTCTTGTAT 608
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 481 AAGAGGCTGAGAGGAGTTGTTCTTCACAGCGCCATTCTCTCTGGAATTAGAGTCCTGTAT 540
Query 609 CCTGTCAAAATGACTCTCTGGTTCGATATATTCAAAAACATAGACAAGATTCGCCATGTC 668
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCTGTCAAAATGACGCTCTGGTTCGATATATTCAAAAACATAGACAAGATTCGCCATGTC 600
Query 669 AACTCACAAGTCCTTGTCATACATGGCACAAATGACGAGATTGTTGATTTGTCTCACGGG 728
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 601 AACTCCCAAGTCCTTGTCATTCATGGCACAAATGATGAGATTGTTGATTTGTCTCACGGG 660
Query 729 AAACGACTGTGGGAGCTGGCGAAGGAGAAGTATGATCCGTTATGGGTGAAGGGAGGAGGG 788
|||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 661 AAACGATTGTGGGAGCTGGCCAAGGAGAAGTACGATCCGTTATGGGTGAAGGGAGGAGGG 720
Query 789 CATTGCAACCTCGAGACTTACCCTGAGTACATCAAGCACCTCAAAAAGTTCGTAAATGCA 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CATTGCAACCTCGAGACTTACCCTGAGTACATCAAGCACCTCAAAAAGTTCGTAAACGCA 780
Query 849 ATGGAGAAACTCTCTCTAACCAATCCACCACCCAAACAACTAACTAATGAGCCCAGTATC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 ATGGAGAAACTCTCTCTAACCAATCCACCACCCAAACAACTAACTAATGAGCCTAGTATA 840
Query 909 ACCGAGACTAAGCACAATCGGTGCTTGAAATTCGGGAAACGGTAG 953
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ACCGAGACTAAGCACAATCGGTGCTTGAAATTCGGGAAACGGTAG 885
> Ahg491644 jgi|Araly1|491644|fgenesh2_kg.7__1077__AT4G31010.1
Length=1481
Score = 292 bits (158), Expect = 4e-78
Identities = 168/173 (97%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 1163 GAGAATCTTGAGCCCCTCTGCTACAACTTAAATCGACATCAGAGTCTATGGAAGATTCAC 1222
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1268 GAGAATCTTGAGCCCCTCTGCTACAACTTAAATCGCCATCGGAGTCTATGGAAGATTCAC 1209
Query 1223 GATGAATGAAGGACGAATATTCATCATCTTCTTTGGGTGGCTTATAGTCTTTACCTCTCC 1282
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1208 GATGAATGAAGGACGAATATTCATCATCGTCTTTGGGTGGCTTATAGTTTTTACCTCTCC 1149
Query 1283 AAATCACGACCTGCTCCTTGTCAAATGTCACCAGGATGCAAGGGACCAAATCC 1335
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1148 AAATCACGACCTGCTCCTTGTTAAATGTCACCAGGATGCAAGGGACCAAATCC 1096
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1464 CCCTAAGCTTTGCTCCAATTTTCTTGTA 1491
||||||||||||||||||||||||||||
Sbjct 1097 CCCTAAGCTTTGCTCCAATTTTCTTGTA 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5