BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31040.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944878 jgi|Araly1|944878|scaffold_701107.1 2187 0.0
> Ahg944878 jgi|Araly1|944878|scaffold_701107.1
Length=1372
Score = 2187 bits (1184), Expect = 0.0
Identities = 1316/1378 (96%), Gaps = 15/1378 (1%)
Strand=Plus/Plus
Query 214 GATTAAAGTCCGAACAATGTTGGGTTTGATTCATGTCCTTGATGAGCTCGTCAATGGTCT 273
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTAAAGTCCAAACAATGTTGGGTTTGATTCATGTCCTTGATGAGCTCGTCAATGGTCT 60
Query 274 TATGCCACTGCTTATCATTCAGTAGTCAAAACCCAGATCCTGAATCATCATCATCTTCTC 333
|||||||||||||||||||||||||||||||||||| ||||||||| | || || |||
Sbjct 61 TATGCCACTGCTTATCATTCAGTAGTCAAAACCCAGTTCCTGAATC-T--TCTTCGTCTT 117
Query 334 TTCTTCGTTATAAGCCTTGTGATTCGATTTCGTTGTGGGGTAAGAGAAGGAAGAAGCTTT 393
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 118 TTCTTCGTTATAAGGCTTGTGACTCGATTTCGTTGTGGGGTAAGAGAAGGAAGAGGCTTT 177
Query 394 GGAGATTTGTTCCCAGTGCGGAGAAGAATAACAGTCATACGGGTAATAATAATAAGAGGA 453
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 178 GGAGATTTGTTCCCAGTGCGGAGAAGAATAACAGTCATACGGG---TAATAATAAGAGGA 234
Query 454 GAAGAAGCTGGTGGCAGAGGTTTTTCTTTGATGATGATGGGAATTGGCTTGGTTTGAGAG 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 235 GAAGAAGCTGGTGGCAGAGGTTTTTCTTTGATGATGATGGGAATTGGCTTGGTTTGAGGG 294
Query 514 ACGACGACATTGTTGATGAGACTACTGAGCTTGCAAAGGATGATGAGATGTCTGATGAAG 573
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 ACGAGGACATTGTTGATGAGACTTCTGAGCTTGCAAAGGATGATGAGATGTCTGATGAAG 354
Query 574 AGAAATTCGAGACTTGGAAGAGACGAGCAGAGGCGATTGTCGAGCTACGGGAAGGTCAGG 633
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 355 AGAAATTCGAGACTTGGAAGAGACGAGCTGAGGCGATTGTGGAGCTACGGGAAGGTCAGG 414
Query 634 AGGAGATTGGGGATAGTGGTGTTGTTGCTGATGTGACCAAGAAATGGGAGGATTGGATTG 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AGGAGATTGGGGATAGTGGTGTTGTTGCTGATGTGACCAAGAAATGGGAGGATTGGATTG 474
Query 694 TGGATTCAGATGATAGTTTTGTTGAGTCTTGGACCCGAGACTCTGCT-G--GT------A 744
||||||||||||||||||| ||||||||||||| ||||||||||||| | || |
Sbjct 475 TGGATTCAGATGATAGTTTAGTTGAGTCTTGGAGCCGAGACTCTGCTGGTAGTGAAGGAA 534
Query 745 GTGACGACAATTTAGAGCTTGATGAATTGACAATTCCAGATGGAGGGTTGGTTAAAATGG 804
|||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 535 GTGACGACAAATTAGAGCTCGATGAATTGACAATTCCAGACGGGGGGTTGGTTAAAATGG 594
Query 805 TGAGGGATATGGTTTTAGGTGCAGAAGAGGAAGATATTCTTTACGAAGACCGTATTTTTC 864
||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||
Sbjct 595 TGAGGGATATGGTTTTAGGAGCAGAAGAGGAAGATATTCTATACGAAGACCGTGTTTTTC 654
Query 865 GTTACGCTTCTTCAAAATCGGCAAAGTTTTTGGCGGTCTTAATTCTCATTCCATGGGCAT 924
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 655 GTTATGCTTCTTCAAAATCGGCAAAGTTTTTGGCGGTATTAATCCTCATTCCATGGGCAT 714
Query 925 TAGACTTTTTGGCTCATGATTATCTACTTATGCCCTTCTTAGACAGATATGTGAAGACTG 984
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 TAGACTTTTTGGCCCATGATTATGTACTTATGCCCTTCTTAGACAGATATGTGAAGACTG 774
Query 985 TACCACTTGCTGCCCAGACGCTTGATGTGAGACGAAATCAGAAGCTAGAAATGGTTAAGG 1044
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 775 TACCACTTGCTGCACAGACGCTTGATGTGAGACGAAATCAGAAGCTAGAAATGGTAAAGG 834
Query 1045 AACTTAATAGAGAAAAAGCTAGGTACCGTCTTGAAGTTGAGATTGGCAAATCTCCGCCGC 1104
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 835 AACTTAATAGAGAAAAAGCTAGGTACCGTCTCGAAGTTGAGATTGGCAAATCTCCTCCTC 894
Query 1105 TTTCTGACGATGATTTATGGTGGGAGATGCGGGGTAAAGCTTTGGAACTGCGTGATGAGT 1164
||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 895 TTTCTGACGATGAGCTATGGTGGGAGATGCGGGGTAAAGCTTTGGAGCTGCGAGATGAGT 954
Query 1165 GGAGACTAGAGAACCGGAAAGCATTTGCCAACATATGGTCTGATATGGTGTTTGGGATCT 1224
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GGAGATTAGAGAACCGGAAAGCATTTGCCAACATATGGTCTGATATGGTGTTTGGGATCT 1014
Query 1225 CCTTGTTTGTTCTTTTGTACGCCAATCAGGGTAGAGTAGCCTTGTTGAAATTTACAGGAT 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1015 CCTTGTTTGTTCTTTTGTACGCCAATCAGGGTAGAGTAGCCTTGTTGAAATTTACGGGGT 1074
Query 1285 ATAAAATCATAAACAACATTTCAGACACGGGAAAGGCATTTCTCATCATCCTGATCACCG 1344
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1075 ATAAAATCATAAACAACATTTCAGACACGGGAAAGGCATTTCTCATTATCTTGATAACCG 1134
Query 1345 ACATATTCTTGGGGTACCATTCTGAATCTGGATGGGAGACATTGTTAGAGATAATAATGG 1404
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ACATTTTCTTGGGGTACCATTCTGAATCTGGATGGGAGACATTGTTAGAGATAATAATGG 1194
Query 1405 AACATTATGGTCTTGAAGTTGAGCAATCTACTATTACCATTTTTATCTGCCTAGTTCCCG 1464
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1195 AACATTATGGTCTCGAAGTTGAGCAGTCTACTATTACCATTTTTATCTGCCTAGTTCCCG 1254
Query 1465 TTATTATGGACGCTTGTGTTAAGCTCTGGCTGTTTAAGTTCCTTCCAAGACTGTCTCCGC 1524
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1255 TTATTATGGACGCTTGTGTTAAGCTCTGGCTCTTTAAGTTCCTTCCAAGACTGTCTCCGA 1314
Query 1525 GAGTTTCCAACATATTCCAGGAGATGAAACGTCACTGAGTAGTACCCACCATTGAAAC 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAGTTTCCAACATATTCCAGGAGATGAAACGTCACTGAGTAGTACCCACCATTGAAAC 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5