BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31050.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491639 jgi|Araly1|491639|fgenesh2_kg.7__1072__AT4G31050.1 1626 0.0
Ahg473903 jgi|Araly1|473903|fgenesh2_kg.1__3857__AT1G47580.1 355 4e-97
> Ahg491639 jgi|Araly1|491639|fgenesh2_kg.7__1072__AT4G31050.1
Length=1065
Score = 1626 bits (880), Expect = 0.0
Identities = 1008/1070 (94%), Gaps = 7/1070 (1%)
Strand=Plus/Plus
Query 1 GTTTCCGTCGTTTTTGATTGGCTAAAAATTGAATGACTGTATATTTACAGAAATAAATTT 60
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| | ||
Sbjct 1 GTTTCCGTCGTTTTTGATTGGCT-AAAATTGAATTACTGTATATTT-CAGAAATATA-TT 57
Query 61 TAAGTAAATTCCACTTTCTTCTTTAGTACAGAGTTATGGAGTTGCTGAATGGAGTAGAAA 120
||||||||||||| ||||||||| || || | ||||||||||||||||||||||||||||
Sbjct 58 TAAGTAAATTCCA-TTTCTTCTTAAGGACCGTGTTATGGAGTTGCTGAATGGAGTAGAAA 116
Query 121 CTCTAGTTTCGGGAATTCATCATCACCATCGTACTAACGCGAAGAGAAACAGATTAGTTA 180
||||| | ||||| ||||||||||||||||||||||||| |||||||||||| || |
Sbjct 117 CTCTAATCTCGGGGCTTCATCATCACCATCGTACTAACGCAAAGAGAAACAGAAGAGCCA 176
Query 181 GATCTGTCAAGATCTTAAACTCCGGGAATCATGAAATCCCCAGAAAGTGCCTGTGTTTTG 240
|||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||||
Sbjct 177 GATCTGTCAAGATCTTAAACTCAGGGAATTATGAAATCCCCAAAAAGTGCCAGTGTTTTG 236
Query 241 ATCTTTACGACAAATTGGTTCCATACAAGAAAGCTTGGTCATGGCAGAAGAGCATTGTCG 300
||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 237 ATCTTTACGACCAATTGGTTCCATACAAGAACGCTTGGGCATGGCAGAAGAGCATCGTCG 296
Query 301 AGGAGAAAAAGACATTGATTGATAGAAACCAAGACTGCGCTGATACAGTGATTTTGTTAC 360
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 297 AGGAGAAAAAGACATTGATTGATAGAAACCAAGACTGCCCCGATACAGTGATTTTATTAC 356
Query 361 AACACTCTCCTGTTTACACAATGGGAACTGCTAGTACAGAGGATTATCTCAATTTCGATA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 357 AACACTCTCCTGTTTACACAATGGGAACTGCTAGTACAGAGGATTATCTCAATTTCGACA 416
Query 421 TAAAGGATGCTCCTTTCAATGTTTATCGAACTGAACGTGGTGGCGAAGTCACTTACCATG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TAAAGGATGCTCCTTTCGATGTTTATCGAACTGAACGTGGTGGCGAAGTCACTTACCATG 476
Query 481 GCCCTGGTCAGCTAGTTATGTATCCTATAATCAATCTTCGAAATCACGAGATGGATCTTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCCCTGGTCAGCTAGTTATGTATCCTATAATCAATCTTCGAAATCACGAGATGGATCTTC 536
Query 541 ATTGGTACCTCAGGATGCTTGAAGAGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATTGGTACCTCAGGATGCTTGAAGAGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCA 596
Query 601 TTAAAGCTTCTCGTCTTGACGGTTTAACTGGAGTTTGGGTTGGCAACCAAAAAGTGGCGG 660
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 597 TTAAAGCTTCTCGTCTTGACGGTTTAACTGGAGTTTGGGTTGGTAGCCAAAAAGTGGCGG 656
Query 661 CGATAGGTATTCGTGTGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACTA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 CGATAGGTATTCGTGTGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACAA 716
Query 721 CAGATCTAACACCATTCAACTGGATAGTTCCATGTGGGATTAGAGACCGGAAAGTTGGAA 780
||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 717 CAGATCTAACACCATTCAACTGGATCGTTCCATGTGGGATTAAAGACCGAAAAGTTGGAA 776
Query 781 ACATAAAGGGCTTGCTTGAAGATGGAGAACACGGAATGGTTGATGATTTGAGGTTGAT-C 839
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 777 GCATAAAAGGCTTGCTTGAAGATGGAGAACACGGAAAGGTTGATGATTTGACGTTGATTC 836
Query 840 GATATAGTTCACGAGTCTTTACTAAAGGAATTCTCTGAAGCTTTCCAGCTTCAGATCGAA 899
|| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 837 -ATGTAGCTCACGAGTCTTTACTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAA 895
Query 900 AAGCAAACAGTTTCAGATCCTAATATTCTGTAAGCTGAGTCTTTTAAACGATTGGAGTGC 959
|||||| ||||| |||||||||| |||||| |||||||| |||| |||||||||||||||
Sbjct 896 AAGCAAGCAGTTCCAGATCCTAAAATTCTGAAAGCTGAGCCTTTCAAACGATTGGAGTGC 955
Query 960 TAAAAGGAAGGTGGTATTGGTAGAACAAAATCCTTGCAATCTCTATAGCATTCTTGTTAA 1019
||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||
Sbjct 956 TAAAAGGAAGGTGTTATTGGTAGAACATAATCCTGGCAATCTCTATACCATTCTTGTTAA 1015
Query 1020 GTTTTGAACATAATG-ATCTTATCTACATAGAAGGTTTTATTGGATGTTT 1068
||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1016 GTTTTGAACATAAAACATCTTATCTACATAGAAGGTTTTATTGGATATTT 1065
> Ahg473903 jgi|Araly1|473903|fgenesh2_kg.1__3857__AT1G47580.1
Length=1295
Score = 355 bits (192), Expect = 4e-97
Identities = 305/359 (85%), Gaps = 9/359 (3%)
Strand=Plus/Plus
Query 557 GCTTGAAG-AGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCATTAAAGCTTCTCGTC 615
||||| || || | ||||| ||||| ||||| || |||||||||| || ||| ||||||
Sbjct 111 GCTTG-AGCAGGTAGTCATTCGTGTTCTTTCTTCGGCTTTCTCCATCAACGCTACTCGTC 169
Query 616 TTGACGGTTTAACTGGAGTTTGGGTTGGCAACCAAAAAGTGGCGGCGATAGGTATTCGTG 675
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 170 TTGACGGTTTAACTGGAGTTTGGGTTGGTAACCAAAAAGTGGCGGCGTTAGGTATTCGTG 229
Query 676 TGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACTACAGATCTAACACCAT 735
||||||||||||| |||||||||||| |||||||||| || || |||||| ||||||| |
Sbjct 230 TGTCGAAATGGATGACATATCATGGTCTAGCTCTTAACGTTACAACAGATTTAACACCTT 289
Query 736 TCAACTGGATAGTTCCATGTGGGATTAGAGACCG-GAAAGTTGGAAACATAAAGGGCTTG 794
| |||| |||||||||||||||||| ||| |||| | ||||||| ||||||| |||
Sbjct 290 TTAACTTGATAGTTCCATGTGGGATAAGAAACCGCGGG-GTTGGAAGTGTAAAGGGTTTG 348
Query 795 CTTGAAGATGGAGAACACG--GA-ATGGTTGATGATTTG-AGGTTGATCGATATAGTTCA 850
|||| ||||||||||| || | | | || |||||| || ||| | ||||||| |||
Sbjct 349 ATTGAGGATGGAGAACATTATGATAAGCTCGACGATTTGCAG-TTGTTAGATATAGCTCA 407
Query 851 CGAGTCTTTACTAAAGGAATTCTCTGAAGCTTTCCAGCTTCAGATCGAAAAGCAAACAG 909
||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 408 TGAGTCGTTATTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGCAAACAG 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5