BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31050.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg491639 jgi|Araly1|491639|fgenesh2_kg.7__1072__AT4G31050.1 1626 0.0 Ahg473903 jgi|Araly1|473903|fgenesh2_kg.1__3857__AT1G47580.1 355 4e-97 > Ahg491639 jgi|Araly1|491639|fgenesh2_kg.7__1072__AT4G31050.1 Length=1065 Score = 1626 bits (880), Expect = 0.0 Identities = 1008/1070 (94%), Gaps = 7/1070 (1%) Strand=Plus/Plus Query 1 GTTTCCGTCGTTTTTGATTGGCTAAAAATTGAATGACTGTATATTTACAGAAATAAATTT 60 ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| | || Sbjct 1 GTTTCCGTCGTTTTTGATTGGCT-AAAATTGAATTACTGTATATTT-CAGAAATATA-TT 57 Query 61 TAAGTAAATTCCACTTTCTTCTTTAGTACAGAGTTATGGAGTTGCTGAATGGAGTAGAAA 120 ||||||||||||| ||||||||| || || | |||||||||||||||||||||||||||| Sbjct 58 TAAGTAAATTCCA-TTTCTTCTTAAGGACCGTGTTATGGAGTTGCTGAATGGAGTAGAAA 116 Query 121 CTCTAGTTTCGGGAATTCATCATCACCATCGTACTAACGCGAAGAGAAACAGATTAGTTA 180 ||||| | ||||| ||||||||||||||||||||||||| |||||||||||| || | Sbjct 117 CTCTAATCTCGGGGCTTCATCATCACCATCGTACTAACGCAAAGAGAAACAGAAGAGCCA 176 Query 181 GATCTGTCAAGATCTTAAACTCCGGGAATCATGAAATCCCCAGAAAGTGCCTGTGTTTTG 240 |||||||||||||||||||||| |||||| |||||||||||| |||||||| |||||||| Sbjct 177 GATCTGTCAAGATCTTAAACTCAGGGAATTATGAAATCCCCAAAAAGTGCCAGTGTTTTG 236 Query 241 ATCTTTACGACAAATTGGTTCCATACAAGAAAGCTTGGTCATGGCAGAAGAGCATTGTCG 300 ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |||| Sbjct 237 ATCTTTACGACCAATTGGTTCCATACAAGAACGCTTGGGCATGGCAGAAGAGCATCGTCG 296 Query 301 AGGAGAAAAAGACATTGATTGATAGAAACCAAGACTGCGCTGATACAGTGATTTTGTTAC 360 |||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| Sbjct 297 AGGAGAAAAAGACATTGATTGATAGAAACCAAGACTGCCCCGATACAGTGATTTTATTAC 356 Query 361 AACACTCTCCTGTTTACACAATGGGAACTGCTAGTACAGAGGATTATCTCAATTTCGATA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 357 AACACTCTCCTGTTTACACAATGGGAACTGCTAGTACAGAGGATTATCTCAATTTCGACA 416 Query 421 TAAAGGATGCTCCTTTCAATGTTTATCGAACTGAACGTGGTGGCGAAGTCACTTACCATG 480 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 417 TAAAGGATGCTCCTTTCGATGTTTATCGAACTGAACGTGGTGGCGAAGTCACTTACCATG 476 Query 481 GCCCTGGTCAGCTAGTTATGTATCCTATAATCAATCTTCGAAATCACGAGATGGATCTTC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GCCCTGGTCAGCTAGTTATGTATCCTATAATCAATCTTCGAAATCACGAGATGGATCTTC 536 Query 541 ATTGGTACCTCAGGATGCTTGAAGAGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 ATTGGTACCTCAGGATGCTTGAAGAGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCA 596 Query 601 TTAAAGCTTCTCGTCTTGACGGTTTAACTGGAGTTTGGGTTGGCAACCAAAAAGTGGCGG 660 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 597 TTAAAGCTTCTCGTCTTGACGGTTTAACTGGAGTTTGGGTTGGTAGCCAAAAAGTGGCGG 656 Query 661 CGATAGGTATTCGTGTGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACTA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 657 CGATAGGTATTCGTGTGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACAA 716 Query 721 CAGATCTAACACCATTCAACTGGATAGTTCCATGTGGGATTAGAGACCGGAAAGTTGGAA 780 ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| Sbjct 717 CAGATCTAACACCATTCAACTGGATCGTTCCATGTGGGATTAAAGACCGAAAAGTTGGAA 776 Query 781 ACATAAAGGGCTTGCTTGAAGATGGAGAACACGGAATGGTTGATGATTTGAGGTTGAT-C 839 |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| | Sbjct 777 GCATAAAAGGCTTGCTTGAAGATGGAGAACACGGAAAGGTTGATGATTTGACGTTGATTC 836 Query 840 GATATAGTTCACGAGTCTTTACTAAAGGAATTCTCTGAAGCTTTCCAGCTTCAGATCGAA 899 || ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 837 -ATGTAGCTCACGAGTCTTTACTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAA 895 Query 900 AAGCAAACAGTTTCAGATCCTAATATTCTGTAAGCTGAGTCTTTTAAACGATTGGAGTGC 959 |||||| ||||| |||||||||| |||||| |||||||| |||| ||||||||||||||| Sbjct 896 AAGCAAGCAGTTCCAGATCCTAAAATTCTGAAAGCTGAGCCTTTCAAACGATTGGAGTGC 955 Query 960 TAAAAGGAAGGTGGTATTGGTAGAACAAAATCCTTGCAATCTCTATAGCATTCTTGTTAA 1019 ||||||||||||| ||||||||||||| |||||| |||||||||||| |||||||||||| Sbjct 956 TAAAAGGAAGGTGTTATTGGTAGAACATAATCCTGGCAATCTCTATACCATTCTTGTTAA 1015 Query 1020 GTTTTGAACATAATG-ATCTTATCTACATAGAAGGTTTTATTGGATGTTT 1068 ||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1016 GTTTTGAACATAAAACATCTTATCTACATAGAAGGTTTTATTGGATATTT 1065 > Ahg473903 jgi|Araly1|473903|fgenesh2_kg.1__3857__AT1G47580.1 Length=1295 Score = 355 bits (192), Expect = 4e-97 Identities = 305/359 (85%), Gaps = 9/359 (3%) Strand=Plus/Plus Query 557 GCTTGAAG-AGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCATTAAAGCTTCTCGTC 615 ||||| || || | ||||| ||||| ||||| || |||||||||| || ||| |||||| Sbjct 111 GCTTG-AGCAGGTAGTCATTCGTGTTCTTTCTTCGGCTTTCTCCATCAACGCTACTCGTC 169 Query 616 TTGACGGTTTAACTGGAGTTTGGGTTGGCAACCAAAAAGTGGCGGCGATAGGTATTCGTG 675 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 170 TTGACGGTTTAACTGGAGTTTGGGTTGGTAACCAAAAAGTGGCGGCGTTAGGTATTCGTG 229 Query 676 TGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACTACAGATCTAACACCAT 735 ||||||||||||| |||||||||||| |||||||||| || || |||||| ||||||| | Sbjct 230 TGTCGAAATGGATGACATATCATGGTCTAGCTCTTAACGTTACAACAGATTTAACACCTT 289 Query 736 TCAACTGGATAGTTCCATGTGGGATTAGAGACCG-GAAAGTTGGAAACATAAAGGGCTTG 794 | |||| |||||||||||||||||| ||| |||| | ||||||| ||||||| ||| Sbjct 290 TTAACTTGATAGTTCCATGTGGGATAAGAAACCGCGGG-GTTGGAAGTGTAAAGGGTTTG 348 Query 795 CTTGAAGATGGAGAACACG--GA-ATGGTTGATGATTTG-AGGTTGATCGATATAGTTCA 850 |||| ||||||||||| || | | | || |||||| || ||| | ||||||| ||| Sbjct 349 ATTGAGGATGGAGAACATTATGATAAGCTCGACGATTTGCAG-TTGTTAGATATAGCTCA 407 Query 851 CGAGTCTTTACTAAAGGAATTCTCTGAAGCTTTCCAGCTTCAGATCGAAAAGCAAACAG 909 ||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 408 TGAGTCGTTATTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGCAAACAG 466 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5