BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31060.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944876 jgi|Araly1|944876|scaffold_701105.1 974 0.0
> Ahg944876 jgi|Araly1|944876|scaffold_701105.1
Length=605
Score = 974 bits (527), Expect = 0.0
Identities = 578/603 (96%), Gaps = 1/603 (0%)
Strand=Plus/Plus
Query 494 TGCTTCTGTTA-GGATATAATGCCACCCTCTCCTCCTAAATCTCCTTTTATTAGCTCTTC 552
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3 TGCTTCTGTTAGGGATATAATGCCACCCTCTCCTCCTAAATCTCCTTTTATGAGCTCTTC 62
Query 553 ACTCAAAGGAGCTCATGAAGATCGCAAATTTAAATGCTATAGGGGTGTCCGAAAGAGGTC 612
||| |||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 63 ACTGAAAGAAGCTCATGAAGATAGCAGATTTAAATGCTATAGGGGTGTCCGAAAGAGGTC 122
Query 613 TTGGGGCAAATGGGTGTCTGAAATCAGAGTTCCAAAGACTGGACGACGAATATGGCTAGG 672
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 123 GTGGGGCAAGTGGGTGTCTGAAATCAGAGTTCCAAAGACTGGAAGACGAATATGGCTAGG 182
Query 673 TTCATACGATGCTCCAGAGAAGGCAGCTAGAGCCTATGATGCTGCTTTGTTCTGTATTAG 732
|||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 183 TTCATACGATGCTCCAGAGAAGGCAGCTCGAGCCTATGATGCTGCTCTGTTTTGTATTAG 242
Query 733 GGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTC 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGGTGAGAAGGGAGTTTACAATTTTCCCACTGATAAAAAGCCGCAGCTTCCAGAAGGTTC 302
Query 793 TGTCCGGCCTCTGTCCAAGCTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TGTCCGGCCTCTGTCCAAGCTCGACATACAGACAATAGCAACAAACTATGCTTCATCAGT 362
Query 853 TGTGCATGTACCTTCCCATGCCACCACACTCCCGGCAACAACCCAGGTTCCCTCTGAAGT 912
||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 363 TGTGCATGTACCTCCCCATGCCACCACACTCCCGGTAACAGCCCAGGTTCCCTCTGAAGT 422
Query 913 TCCTGCTTCCTCTGATGTTTCTGCTTCTACTGAGATTACAGAGATGGTCGATGAATATTA 972
|||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 423 TCCTACTTCCCCTGATGTATCTGCTTCTACTGAGATTACAGAGATAGTCGATGAATATTA 482
Query 973 TCTCCCAACCGATGCAACTGCAGAATCAATATTCTCAGTTGAAGACTTACAACTGGACAG 1032
||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 483 TCTCCCAACCGATGCAAGTGCAGAATCAATATTCTCAGTAGAAGACTTGCAACTGGACAA 542
Query 1033 TTTCCTCATGATGGACATTGATTGGATAAACAATCTAATCTGATGTGTAACGTCACTTGC 1092
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 543 TTTCCTCATGATGGACATTGATTGGATAAACAATCTAGTCTGATGTGTGACGTCACTTGC 602
Query 1093 AGT 1095
|||
Sbjct 603 AGT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5