BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31110.1
Length=2534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491636 jgi|Araly1|491636|fgenesh2_kg.7__1069__AT4G31110.1 3332 0.0
Ahg920884 jgi|Araly1|920884|scaffold_102165.1 867 0.0
Ahg472005 jgi|Araly1|472005|fgenesh2_kg.1__1959__AT1G17910.1 806 0.0
> Ahg491636 jgi|Araly1|491636|fgenesh2_kg.7__1069__AT4G31110.1
Length=2533
Score = 3332 bits (1804), Expect = 0.0
Identities = 2320/2563 (91%), Gaps = 59/2563 (2%)
Strand=Plus/Plus
Query 1 AGTAGAGAAACATGAGCAACGAAAGTACAAATTGCTCTTTCTTCTTGAATCTCTTCATGC 60
|||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1 AGTATAGAGACATGAGCTACGAAAATACAAATTGCTCTTTCTTCTTGAATCTCTTCAAGC 60
Query 61 TGTTACTTTTGCTGATTTTTTATTCTGCAGATGCTTGTCAAAGGGAATGTGGAGGAATCT 120
| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 61 TACTACTTTTGCTGATCTTTTATTCTGCAGATCCTTGTCAAAGGGAGTGTGGAGGAATCG 120
Query 121 CTATCCCATACCCTTTCGGAATCGGAAAAGATTGCTGTCTCGAGAAGTATTACGAAATCG 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CTATCCCATACCCTTTCGGAATCGGAAAAGATTGCTATCTCGAGAAGTATTACGAAATCG 180
Query 181 AATGTCGTAACACAACTTCAAGAAAGCTTGTTCCTTTACTTTCTTTTATTAACAAAGAAG 240
||||||||| |||||||||||||||||||| ||||| |||||| | |||| ||||||||
Sbjct 181 AATGTCGTATTACAACTTCAAGAAAGCTTGTCCCTTTCCTTTCTGTAATTAGCAAAGAAG 240
Query 241 TTGTGAGTATCTCTCTTCCGAGTGCAGATAGTCATTTTGCTTATGA-AGTATCTGATCAA 299
|||||||||||||||||||||||||||| ||||||||||||||| | | || ||||||||
Sbjct 241 TTGTGAGTATCTCTCTTCCGAGTGCAGAAAGTCATTTTGCTTAT-ACAATAACTGATCAA 299
Query 300 GAACGTCATGAATCATTTGGCTTAGTTCGTGTCAAGTTCCCGATTACATCCGCCGGATGT 359
|| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 300 GATCGTCATGAATCATTTGGGTTAGTTCGTGTCAAGTTCCCGATTACATCCACAGGATGT 359
Query 360 TTCAACGATGGAAAAGAGTCTGGAGGCGGATCAAAAATGAACTTCACGGGTAGCCCTTTC 419
|||| ||||||||||||||||| |||||||| ||||||||||||||||| || |||||||
Sbjct 360 TTCAGCGATGGAAAAGAGTCTGCAGGCGGATTAAAAATGAACTTCACGGATACCCCTTTC 419
Query 420 TTCATTGACAG-ATCAAACAGCCTCATAGCGGCTGGTTGCAACAGCAAAGTGTCTTTGAT 478
||||||| ||| | |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 420 TTCATTGGCAGCA-CAAACAGCCTCATAGCGGTTGGTTGCAACAGCAAAGTGTCGTTGAT 478
Query 479 GTATATAAAGCCAAAAATGGTAGGATGCGAGTTGAGTTGCAATACAAGCAAAGACTCATA 538
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 GTATATAAAGCCGAACATGGTAGGATGCGAGTTGAGTTGCAATACAAGCAAAGACTCGCA 538
Query 539 TAGCAATAGCATCCCTTTTGTCGAAGCGGGGTGCTCAAGCAACGTTTTACCCTATTCTCA 598
||||||||||||||||||||| ||| |||| ||||| |||||||||||| ||||||||||
Sbjct 539 TAGCAATAGCATCCCTTTTGTGGAAACGGGTTGCTCGAGCAACGTTTTATCCTATTCTCA 598
Query 599 GGACCAAGGTTGTCCAGAAGAGATAGCAGAAGAAACAGGATGCAATGGTATCGGATGTTG 658
||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct 599 GGACCAAGGTTGTACAGAAGAGACACCAGAAGAAACAGGATGCAATGGTAACGGATGTTG 658
Query 659 CCAGGCAAGTCTACCTAACGAGCCTCAACAAGTTATTGGTATCAGAACAGAGAATAATGA 718
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 CCAGGCAAATCTACCTAACGAGCCTCAACAAGTTATTGGTATCAGAACAGAGAGCAATGA 718
Query 719 TGGAAACTCGACAACAAAAGTAGAGTGTACAGTCTCGGCCTTCTTAACAGATGAGATCTA 778
|||||||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||
Sbjct 719 TGGAAACTCGACAACAAAAGTACCGTGTACAGT-T--GCCTTCTTAACTGATGAAATCTT 775
Query 779 CGCTTTGCCGAAGGCGACCAAAACAGAACACTTACTTGCTAAGAGATATGCTACGGTTAG 838
| ||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 776 CACTTCGCCGAATGCGATCAAAAGAGAACACTTACTTGCTAAGCGATATGCTACGGTTAG 835
Query 839 TCTAGGATGGGTAATCCAGACGAGTAATAGA-TCTTTCCTGGACTCCTTGGCCTTGGCCT 897
| ||||||||||||||||||| | |||| | ||||| || | | | |||||||||
Sbjct 836 TATAGGATGGGTAATCCAGACTAAAAATA-ATTCTTT-CT--TCAAC-T--CCTTGGCCT 888
Query 898 GCAAAGACAGAGAAGATTACCGCAATACTACTAAC-TTG--G-A----AA-GAAAGTGTA 948
||||| |||||||| ||||||||||||||| | || ||| | | || |||||||||
Sbjct 889 GCAAAAACAGAGAATATTACCGCAATACTAGTTACTTTGTTGAACCTGAAGGAAAGTGTA 948
Query 949 CATGCGGCAGAATCACTATATCTGAGACAAGTTATGCAAACTGTGGATGCACCTATGGTT 1008
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 949 CATGCGCCAGAATCACTATATCTGAGTTAAGTTATGCAAACTGTGGATGCACCTATGGTT 1008
Query 1009 ACACAGGTAACCCATATGTTTTGAACGGATGCAAAGATATTGATGAATGTAAAGTCAAAT 1068
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1009 ACACAGGTAACCCATATATTTTGGATGGATGCAAAGATATTGATGAATGTAAAGTCAAAT 1068
Query 1069 TCGAATACTGTGGAA-AGACAGAAACTTGTGTGAATTTTGAAGGAGGCTATCGCTGCGTG 1127
|||||||||| || ||||||| |||||||||||||| || ||| ||||||| ||||||
Sbjct 1069 ACGAATACTGT-AAAGAGACAGACACTTGTGTGAATTTGGAGGGAAGCTATCGATGCGTG 1127
Query 1128 CGCGATAAAACTAAAGCGATAATGATAGGCGCGGGTACGGGTTTTGGGGTCTTAGTCCTA 1187
||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1128 GGCGATAAGACTAGAGCGATAATGATAGGGGCGGGTGCGGGTTTTGGGGTCTTAGTCCTT 1187
Query 1188 GTTGGTGGATTATGGTGGTTGAGAAAGTTTCTAATAAAGAGAAGGATCACAAAGAGAAAG 1247
||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 1188 GTTGGTGGAGTATGGTGGTTGAGAAAGTTTTTAATAAAGAGAAGGATGACAAAGAGGAAG 1247
Query 1248 AAAAAGTTCTTCAAACGTAACGGAGGACTACTATTGCTACAAGAATTAAATACCAGAGAA 1307
|| ||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||
Sbjct 1248 AAGAAGTTCTTCAAACGTAATGGGGGACTACTTTTGCAACAAGAATTAAATACCAGAGAA 1307
Query 1308 GGCTATGTCGAAAAGACTAGAGTCTTCAACTCGAGAGAGCTAGAGAAAGCCACCGAGAAC 1367
||| |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GGCAATGTTGAAAAGACAAGAATCTTCAACTCGAGAGAGCTAGAGAAAGCCACCGAGAAC 1367
Query 1368 TTCAGCGAAAACAGAGTTCTTGGACATGGTGGTCAAGGTACTGTGTACAAAGGTATGCTT 1427
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 1368 TTCAGCGAAAACAGAGTTCTTGGACAAGGGGGTCAAGGTACTGTGTATAAAGGTATGCTC 1427
Query 1428 GTAGATGGTAGAACCGTTGCAGTAAAGAAATCCAAAGTTATAGATGAAGACAAACTCCAA 1487
|| ||||||||||| |||||||| |||||||| ||||||||||||||||||||| | |||
Sbjct 1428 GTTGATGGTAGAACTGTTGCAGTCAAGAAATCTAAAGTTATAGATGAAGACAAATTACAA 1487
Query 1488 GAGTTCATCAACGAGGTCGTGATTCTCTCCCAAATAAACCATAGACACGTCGTCAAACTC 1547
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1488 GAGTTCATCAACGAGGTCGTGATTCTCTCCCAGATAAATCATAGACACGTCGTCAAACTC 1547
Query 1548 TTGGGATGTTGTCTTGAGACAGAAGTTCCTATGT-TGGTTTACGAGTTTATCATCAATGG 1606
||||||||||||||||||||||||||||| || | |||||||||||||||||||||| ||
Sbjct 1548 TTGGGATGTTGTCTTGAGACAGAAGTTCCCAT-TCTGGTTTACGAGTTTATCATCAACGG 1606
Query 1607 TAACCTCTTTAAGCATATCCATGA-AGAAGAATCTGATGATTACACTATGTTATGGGGAA 1665
||||||||| |||| |||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 1607 CAACCTCTTTCAGCAAATCCATGATA-AAGAATCTGATGATTACACTATGGTATGGGGAA 1665
Query 1666 TGCGTCTACGCATAGCTGTGGATATTGCAGGAGCTCTTTCTTATCTTCATTCTTCTGCAT 1725
|||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1666 TGCGTCTACGAATTGCTGTGGATATCGCAGGAGCTCTTTCTTATCTTCATTCTGCTGCAT 1725
Query 1726 CTTCTCCAATCTATCATAGAGATATCAAGTCAACAAATATATTACTAGACGAAAAGTACC 1785
||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1726 CTTCTCCGATATATCATAGAGATATAAAGTCAACAAACATATTACTAGACGAAAAGTACC 1785
Query 1786 GAGCCAAGGTGGCTGATTTTGGAACGTCAAGATCAGTAACCATAGATCAAACTCATTGGA 1845
||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 1786 GAGCCAAGGTGGCTGATTTCGGAACATCAAGGTCGGTAACCATAGATCAAACTCATTGGA 1845
Query 1846 CAACGGTTATTTCAGGTACAGTTGGGTATGTGGATCCGGAGTACTACCAGTCAAGCCAAT 1905
||||| ||||||||||||| ||||||||||||||||| ||||| |||| ||| |||||||
Sbjct 1846 CAACGATTATTTCAGGTACGGTTGGGTATGTGGATCCAGAGTATTACCGGTCCAGCCAAT 1905
Query 1906 ATACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGATTTTAGCTGAACTTATCACTGGAG 1965
|||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1906 ATACCGAAAAGAGTGATGTTTATAGCTTTGGAGTGATTCTAGCGGAACTTATCACTGGAG 1965
Query 1966 ATAAGCCTGTCATAATGGTACAAAACACTCAAGAGATAGTTGCCCTTG-CAGAGCATTTC 2024
| ||||||||||||||||| |||||||||||||| ||| | ||| ||| |||||||||||
Sbjct 1966 AAAAGCCTGTCATAATGGTCCAAAACACTCAAGAAATAATAGCC-TTGGCAGAGCATTTC 2024
Query 2025 AGAGTTGCCATGAAAGAGAAGAGACTTACAGATATCATAGATGCTAGAATAAGAAATGAC 2084
||| || ||||||||||||||||| || | |||||||| ||||||||||||||| ||||
Sbjct 2025 AGACTTTCCATGAAAGAGAAGAGATTTTCTGATATCATGGATGCTAGAATAAGAGATGAT 2084
Query 2085 TGCAAACCGGAACAAGTAATGGCAGTAGCAAAGGTGGCAATGAAGTGTTTGAGCTCGAAA 2144
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 2085 TGCAGACCGGAACAAGTAATGGCAGTAGCAAAGCTGGCAATGAAGTGTTTGAGTTCTAAA 2144
Query 2145 GGaaaaaaaCGTCCGAATATGAGAGAAGTTTTTACAGAGTTGGAGAGGATTTGTACTTCT 2204
||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2145 GGAAAGAACCGTCCGAATATGAGAGAAGCTTTTACAGAGTTGGAGAGGATTTGTACTTCT 2204
Query 2205 CCGGAAGATTCACAGGTGCATAACCGGATTGACgaagaagaagaagaagaagaagaggag 2264
||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 2205 CCGGAGGATTCACAGGTGCAGAATCGGATTGACGAAGAAGAAGAAGAAGAAGAAGA--AG 2262
Query 2265 gaagaagTTGTGACGACAATAAACAGAGGCGATTCTTGGAGCATTAGTGTTACTGCTCCA 2324
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2263 -AAGAAGTTGTGACGACAATAAACAGAGGCGATTCTTGGAGCATTGGTGTTACTGCTCCA 2321
Query 2325 GCCTTAAGTATTGTGGCTTCATCTCCTTCTTCAGATGTTGAACCATTGTTTCCTCGTCTC 2384
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2322 GCCTTTAGTATTGTGGCTTCACCTCCTTCTTCAGATGTTGAACCATTGTTTCCTCGTCTC 2381
Query 2385 ACATGGTGACTGACACTTAATTTGATGTTTCTTCTTACAACGTTT-GTGTAATATATTTG 2443
|||||||||| || | ||| || | | || | |||| |||||||| |||||
Sbjct 2382 ACATGGTGAC--ACTC--AATCAGAAACTAAAT-TTG-AT-GTTTTGTGTAATAAATTTG 2434
Query 2444 TAACATCTATATA--TCTTGTTACTTT-A-GTCTTGAGTTTTGTATTAAGGAACCTGTTA 2499
|||||| || ||| ||||| | ||| | |||||||||||||||||||||||||||||
Sbjct 2435 TAACAT-TA-ATAAGTCTTG--AGTTTTAAGTCTTGAGTTTTGTATTAAGGAACCTGTTT 2490
Query 2500 T-G---TT-TGT-TTTT--GTAAATTAATTGTGAGTGATGATG 2534
| | || ||| |||| ||||||||||||| ||||||||||
Sbjct 2491 TTGAGATTATGTCTTTTTTGTAAATTAATTGTCAGTGATGATG 2533
> Ahg920884 jgi|Araly1|920884|scaffold_102165.1
Length=2419
Score = 867 bits (469), Expect = 0.0
Identities = 1640/2180 (75%), Gaps = 181/2180 (8%)
Strand=Plus/Plus
Query 311 ATCATTTGGCTTAGTTCGTGTCAAGTTCCCGATTACATCCGCCGGATGTTTC-AACGATG 369
|||||| || | | |||||||||| || ||| ||||||| || |||| | || ||||
Sbjct 306 ATCATTCGGATCAATTCGTGTCAAAAGCCGGATAACATCCGTTGGCTGTTCCGAA-GATG 364
Query 370 GAAAAGAGTCTGGAGGCGGATCAAAAATGAACTTCACGGGTAGCCCTTTCTTCATT-GAC 428
||||||| |||||| ||| | |||| || |||| ||||||||| ||| || |
Sbjct 365 GAAAAGAATCTGGA-TCGG-T----TTTGAATTTGACGGATAGCCCTTTTTTCTTTGGGT 418
Query 429 AGATCAAACAGCCTCATAGCGGCTGGTTGCAACAGCAAAGTGTCTTTGATGT-ATATAAA 487
| ||||||||| ||||| ||||||||||||||| | || |||| | | || |
Sbjct 419 TTA-GAAACAGCCTTGTAGCGATTGGTTGCAACAGCAAGGCCTCGTTGA-CTAACATTGA 476
Query 488 GCCAAA-AATGGTAGGATGCGAGTTGAGTTGCAATACAAGC-AA-AG-ACTCAT-ATAGC 542
|||||| || ||| ||||||||||||| |||| ||||||| || || | | | ||||
Sbjct 477 GCCAAACAA-GGTGGGATGCGAGTTGAACTGCACTACAAGCAAAGAGAAGT-TTCCTAGC 534
Query 543 AATAGCATCCCTTTTGTCG---AAGCGGGGTGCT-CAAGCAACGTTTTACCCTATTCTCA 598
|| |||||||||||| ||| || | || || | | ||||||| || || ||| || |
Sbjct 535 AAAAGCATCCCTTTTTTCGACAAAACCGGATG-TACTAGCAACGCGTTGCCTTATACTTA 593
Query 599 GGAC-CAAGG-TTGT-C-CAGAAGAGA-TAGCAGAAGAAACAGGATGCAATGGTATCGGA 653
|| | || |||| | |||| | | | |||||||| | | || |||| | ||||
Sbjct 594 -CACTC-CGGTTTGTACAAAGAACAAAGGGGAAGAAGAAAGAAGCTGTGATGGCAACGGA 651
Query 654 TGTTGCCAG-GCAAGTCTA-CC--TAACGAGCCTCAACAAGTTATTGGTATCAGAACAGA 709
|| || | | |||||||| || | | ||| ||||||| || || ||| ||| || |||
Sbjct 652 TGCTGTC-GTTCAAGTCTACCCGGTGATGAGGCTCAACAGGTGATCGGTGTCAAAATAGA 710
Query 710 GA---ATAATGATGGAAACTCGACAACAAAAGTAGAGTGTACAGTCTCGGCCTTCTTAAC 766
|| | || |||||||| |||| | | | ||| || ||| || || ||||||||
Sbjct 711 GAGCTTTGATCATGGAAACACGAC-A-AGCCG-AGAATG--CAGAGTC-GCTTTCTTAAC 764
Query 767 AGATG-AGATCTACGCTTTGCCGAAGGCGACCAAAACAGAACA-CTTACTTGCT-AAGAG 823
||||| || ||||| | || | || || ||| || ||| | | || ||||| ||| |
Sbjct 765 AGATGAAG-TCTACACGTTATCTAATGCAACCGAACCAG-AGAGGTTTTTTGCTAAAG-G 821
Query 824 ATATGCTACGGTTAGTCTAGGATGGGTAATCCAGACGAGTAATAGATCTTTCCTGGACTC 883
||||||| ||||| | |||||||| | ||||| | ||| || ||||| |||
Sbjct 822 GTATGCTATAGTTAGAATTGGATGGGTCCTTCAGACAAAAAATCTTTCATTCCTAAACT- 880
Query 884 CTTGGCCTTGGCCTGCAAAGACAGAGAAGATTACCGCA-ATAC-TAC-TA-ACT-TGGAA 938
| ||| | ||||||| ||| |||||| || || | | || ||| || | | || ||
Sbjct 881 C----CCTAAG-CTGCAAAAACACAGAAGAGTA-CG-ATAAACTTACATATAATATGCAA 933
Query 939 ---AG-A-AAG-TGTACATGCGGCAGA-ATCACTA-TATCTGAGA-CAAGTTATGCAAAC 989
|| | ||| || | |||| || | ||||| | || || || ||| ||||||||||
Sbjct 934 CTCAGAACAAGCTGCAGATGCAACA-ATATCACCACTA-ATGGGACCAA-TTATGCAAAC 990
Query 990 TGTGGATGCACCTA-TGGTTACACAGGTAACCCATA-TGTTTTGAACGGATGCAAAGATA 1047
||||||||| | | ||||| |||||||||||||| | ||| ||||||| ||||||
Sbjct 991 TGTGGATGC-GCGAGAGGTTATACAGGTAACCCATACCGCATTG-GCGGATGCGAAGATA 1048
Query 1048 TTGATGAATG--TAA-A-GTCAAAT-TCGAAT---ACT-G-TGG-A----A-AGACA--G 1089
|| |||| || ||| | | | ||| || || | | | ||| | | ||| | |
Sbjct 1049 TTAATGACTGCCTAATACG-C-AATCCCG-ATGGCAGTCGCTGGCACTGTAGAGAAAGCG 1105
Query 1090 AAACTTGTGTGAATTTTG-AAGGAGGCTATCGCTGCGTGCGCGATAAAACTAAAGCGA-T 1147
| ||||| ||||| | || ||| | | | |||||| ||||||| ||| ||| | |
Sbjct 1106 ACACTTGCGTGAA-TGTGCCTGGAAGTTTTTATTGCGTGGGCGATAAGACTGGAGC-AGT 1163
Query 1148 AATGATAGGCGCGGGTACGGGTTTTGGGGTCTTAGTCCTAGTTGGTGG-ATTATGGTGGT 1206
||||||||||| ||| | ||||| || |||||||||||| ||||| ||| ||||||
Sbjct 1164 AATGATAGGCGTAGGTGCAGGTTTAGGCATCTTAGTCCTAGCAGGTGGAATT-TGGTGGC 1222
Query 1207 TGAGAAAGTTTC-TAATAAAGAGAAGGATCACAAAGA-G-AAAGAAAAAGTTCTTCAAAC 1263
|||||||||| | | | |||||||| ||| | |||| | |||| |||| ||||| |||
Sbjct 1223 TGAGAAAGTTCCTTGA-AAAGAGAAAGATGAGTAAGAGGAAAAG-AAAA-TTCTTTGAAC 1279
Query 1264 GTAACGGAGGACTACTATTGCTACAAGAATTAAATACCAGAGAAGGCT-ATGTCGAAAAG 1322
|||| || |||||| | |||| |||| || || |||| |||||||| | | ||||| |||
Sbjct 1280 GTAATGGGGGACTATTGTTGCAACAACAACTACATACAAGAGAAGG-TAACGTCGAGAAG 1338
Query 1323 ACTAGAGTCTTCAACTCGAGAGAGCTAGAGAAA-GCCACCGAGAA-CTTCAGCGAAAACA 1380
|| ||| | |||| ||||| ||| || || ||| ||||| || || ||| |||||||| |
Sbjct 1339 ACAAGAATATTCACCTCGACAGAACTTGA-AAAGGCCACTGA-AAGCTTTAGCGAAAATA 1396
Query 1381 -GAGTTCTTGGACATGGTGGTCAAGGTACTGTGTACAAAGGTATGCTTGTAGATGGTAGA 1439
|| | |||||||| |||||||| |||||||| ||||| || ||||||||||||||||||
Sbjct 1397 GGA-TACTTGGACAAGGTGGTCAGGGTACTGTATACAAGGGAATGCTTGTAGATGGTAGA 1455
Query 1440 ACCGTTGCAGTAAAGAAATCCAAAGTTATAGATGAAGACAAACTCCAAGAGTTCATCAAC 1499
|| || || || |||||||||| |||| |||||||||||||||| | |||||||||||
Sbjct 1456 ACTGTCGCTGTCAAGAAATCCACAGTTGTAGATGAAGACAAACTAGAGGAGTTCATCAAT 1515
Query 1500 GAGGTCGTGATTCTCTCCCAAATAAACCATAGACACGTCGTCAAACTCTTGGGATGTTGT 1559
|| ||||| |||||||| || || ||||||||||| |||||||| || ||||||||||||
Sbjct 1516 GAAGTCGTCATTCTCTCTCAGATTAACCATAGACATGTCGTCAAGCTTTTGGGATGTTGT 1575
Query 1560 CTTGAGACAGAAGTTCCTATGT-TGGTTTACGAGTTTATCATCAATGGTAACCTCTTT-- 1616
||||| ||||||||||| || | |||||||||||||||| ||||||||||||| |||
Sbjct 1576 CTTGAAACAGAAGTTCCAAT-TCTGGTTTACGAGTTTATTGTCAATGGTAACCT-TTTCC 1633
Query 1617 AAGCATATCCATGAAGAAGAATCTGATGATTACACTATG-TTATGGGGAATGCGTC-TAC 1674
|| ||||||||| |||||||||||||||||||| || | |||||| |||| | | |
Sbjct 1634 AA-CATATCCAT---GAAGAATCTGATGATTACACGGTGAGT-TGGGGAGTGCG-CTTGC 1687
Query 1675 GCATAGCTGTGGATATTGCAGGAGCTCTTTCTTATCTT-CATTCTTCTGCATCTTCTCCA 1733
|||| || ||||||||||| ||||||||||| ||| || |||||| |||||| |||||||
Sbjct 1688 GCATTGCCGTGGATATTGCTGGAGCTCTTTCGTAT-TTGCATTCTGCTGCATGTTCTCCA 1746
Query 1734 ATCTATCATAGAGATATCAAGTCAACAAATATATTACTAGACGAAAAGTACCGAGCCAAG 1793
|| ||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||| ||
Sbjct 1747 ATTTATCACAGAGATATAAAGTCAACAAACATATTACTAGACGAGAAGTATCGAGCTAAA 1806
Query 1794 GTGGCTGATTTTGGAACGTCAAGATCAGTAACCATAGATCAAACTCATTGGACAACGGTT 1853
||| |||||||||| || |||||||||||||| ||||||| ||||| |||||||| ||
Sbjct 1807 GTGTCTGATTTTGGTACTTCAAGATCAGTAACGGTAGATCATACTCACTGGACAACAATT 1866
Query 1854 ATTTCAGGTACAGTTGGGTATGTGGATCCGGAGTACTACCAG-TCAAGCCAATATACTGA 1912
|||||||||||||| || ||||||||||| |||||||| | | || ||||||||||| ||
Sbjct 1867 ATTTCAGGTACAGTAGGATATGTGGATCCAGAGTACTA-CGGATCCAGCCAATATACCGA 1925
Query 1913 AAAGAGTGATGTTTATAGCTTTGGAGTGAT-TTTAGCTGAACTTATCACTGGAGATAAGC 1971
|||||||||||||||||||| || || || || | ||||||||| || ||||| || |
Sbjct 1926 TAAGAGTGATGTTTATAGCTTCGGGGTCATCCTT-GTTGAACTTATTACAGGAGAGAAAC 1984
Query 1972 CTGTCATAATGGTACAAAACACTCAAGAGAT-AGTTGCCCTT-GCAGAGCATTTCAGAGT 2029
|||| |||| | | || ||| || || || | || || ||||||||||||||
Sbjct 1985 CTGTAATAACCCTTCCGAATTCTCGGGAAATAAG-AG-GGTTGGCGGAGCATTTCAGAGT 2042
Query 2030 TGCCATGAAAGAGAAGAGA--CTTACAGATATCATAGATGCTAGAATAAGAAATGACTGC 2087
||||||||||||||| | | ||| ||||| || |||||| |||| | | ||| |||
Sbjct 2043 TGCCATGAAAGAGAACAAATTCTTT--GATATTATGGATGCTCGAATCACAGATGGTTGC 2100
Query 2088 AAACCGGAACAAGTAATGGCAGTAGCAAAGGTGGCAA-T-GAAGTGTTTGAGCTCGAAAG 2145
||||| |||||||||||||||||||| || | |||| | || ||| ||| || ||||
Sbjct 2101 AAACCAGAACAAGTAATGGCAGTAGCGAATCTAGCAAATAGA--TGTCTGAATTC-AAAG 2157
Query 2146 Gaaaaaaa-CGTCCGAATATGAGA-GAAGTTTTTACAGAGTTGGAGAGGATTTGTACTTC 2203
| ||| || || || ||||||||| || || ||||| ||| | |||| ||| ||| | ||
Sbjct 2158 GGAAAGAAGCGCCCAAATATGAGACGA-GTGTTTACCGAGCTAGAGAAGATCTGTTCATC 2216
Query 2204 TCCGGAAGATTCACAGGTGCATAACCGGAT--TGACgaa-gaagaagaagaagaagaaga 2260
||| || ||||||| ||| ||| | || |||| || || | || ||||| |||||
Sbjct 2217 TCCAGAGGATTCACTGGTTCAT--CTTGAAAATGAC-AATGATGTGGATGAAGAGGAAGA 2273
Query 2261 ggaggaag-aagTTGTG-ACGACAATAAACAGAGGCGATTCTTGGAGCATTAGTGTTACT 2318
||||| || | | | |||| || | || | || | ||| |||| ||| ||||
Sbjct 2274 --AGGAATTAA-TACAGCA-GACA-TAG-CTGA--C-ATG-T-GGACCATTGGTGCTACT 2322
Query 2319 GCTCCAGCCT-TAAGTATTGTGGCTTCATCTC-CTTC-TTCAGATGTTGAACCATTGTTT 2375
|||||||||| || ||||||| ||||| ||| || | || ||| ||||||||||| ||
Sbjct 2323 GCTCCAGCCTCTA-GTATTGTTGCTTCGTCTTTCT-CGTT-AGAAGTTGAACCATTACTT 2379
Query 2376 CCTCGTCTCACATGGTGACT 2395
||||| | ||||||||||||
Sbjct 2380 CCTCGCCCCACATGGTGACT 2399
> Ahg472005 jgi|Araly1|472005|fgenesh2_kg.1__1959__AT1G17910.1
Length=2213
Score = 806 bits (436), Expect = 0.0
Identities = 877/1089 (81%), Gaps = 33/1089 (3%)
Strand=Plus/Plus
Query 1176 GTCTTAGTCCTAGTTGGTGGAT-TATGGTGGTTGAGAAAGTTTCTAATAAAGAGAAGGAT 1234
|||||| || ||| ||||| | |||||||||||| |||| |||| | ||| | ||||||
Sbjct 1087 GTCTTAATCGTAGCCGGTGG-TATATGGTGGTTGAAAAAGCTTCTTAGAAAAAAAAGGAT 1145
Query 1235 CACAAAGAGAAAGA-AAAAGTTCTTCAAACGTAACGGAGGACTACTATTGCTA-CAAGAA 1292
|||||| | |||| ||| |||||||||||||| ||||||||| | |||| | ||| |
Sbjct 1146 GACAAAGCGCAAGAGGAAA-TTCTTCAAACGTAATGGAGGACTATTGTTGC-AGCAACAG 1203
Query 1293 TTAAATACCAGAGAAGGCTA-TGTCGAAAAGACTAGAGTCTTCAACTCGAGAGAGCTAGA 1351
|||| ||| | ||||| | || ||||| || | | | |||| ||| |||||||| ||
Sbjct 1204 TTAACTACAACTCAAGGC-AGAGTTGAAAAAACAAAAATATTCAGCTCAAGAGAGCTGGA 1262
Query 1352 GAAAGCCACCGAGAACTTCAGCGAAAACAGAGTTCTTGGACATGGTGGTCAAGGTACTGT 1411
|||||||| || ||||||| |||||| || ||| ||||||| ||||| ||||| |||||
Sbjct 1263 AAAAGCCACTGATAACTTCAACGAAAATAGGGTTATTGGACAAGGTGGCCAAGGAACTGT 1322
Query 1412 GTACAAAGGTATGCTTGTAGATGGTAGAACCGTTGCAGTAAAGAAATCCAAAGTTATAGA 1471
||||||||||||||||||||||||||| | |||||||| ||||||||||| ||| ||||
Sbjct 1323 GTACAAAGGTATGCTTGTAGATGGTAGGTCTGTTGCAGTCAAGAAATCCAATGTTGTAGA 1382
Query 1472 TGAAGACAAACTCCAAGAGTTCATCAACGAGGTCGTGATTCTCTCCCAAATAAACCATAG 1531
|||||||||||| ||||||||||||||||| ||| | ||||||||||| || ||||||||
Sbjct 1383 TGAAGACAAACTACAAGAGTTCATCAACGAAGTCATTATTCTCTCCCAGATCAACCATAG 1442
Query 1532 ACACGTCGTCAAACTCTTGGGATGTTGTCTTGAGACAGAAGTTCCTATG-TTGGTTTACG 1590
||||||||| || || |||||||||||||||||||| ||||||||| | ||| ||||||
Sbjct 1443 ACACGTCGTGAAGCTTTTGGGATGTTGTCTTGAGACCGAAGTTCCTGTTCTTG-TTTACG 1501
Query 1591 AGTTTATCATCAATGGTAACCTCTTTAAGCATATCCATGAAGAAGAATCTGATGATTACA 1650
||||||||| ||| || ||||||||| ||||| ||||||||||| | ||| || ||||
Sbjct 1502 AGTTTATCACCAACGGAAACCTCTTTCAGCATCTCCATGAAGAAT--T-TGACGACTACA 1558
Query 1651 CTATGTTATGGGGAATGCGTCTACGCATAGCTGTGGATATTGCAGGAGCTCTTTCTTATC 1710
| |||||||||| | ||| | ||||| ||||| ||||| || |||||| |||| ||||
Sbjct 1559 CGGTGTTATGGGGTGTACGTATGCGCATTGCTGTAGATATCGCGGGAGCTTTTTCGTATC 1618
Query 1711 TTCATTCTTCTGCATCTTCTCCAATCTATCATAGAGATATCAAGTCAACAAATATATTAC 1770
| || || |||||| ||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1619 TACACACTGCTGCATGTTCTCCAATTTATCACAGAGATATCAAGTCAACAAACATATTAC 1678
Query 1771 TAGACGA-AAAGTACCGAGCCAAGGTGGCTGATTTTGGAACGTCAAGATCAGTAACCATA 1829
|||| || ||| |||||||| || ||| |||| |||||||| ||||||||||| |||||
Sbjct 1679 TAGATGAGAAA-TACCGAGCTAAAGTGTCTGACTTTGGAACTTCAAGATCAGTTTCCATA 1737
Query 1830 GATCAAACTCATTGGACAACGGTTATTTCAGGTACAGTTGGGTATGTGGATCCGGAGTAC 1889
||||| ||||||||||||||||| || || |||||||| |||||||||||||| || |||
Sbjct 1738 GATCATACTCATTGGACAACGGTAATATCGGGTACAGTCGGGTATGTGGATCCAGAATAC 1797
Query 1890 TACCAGTCAAGCCAATATACTGAAAAGAGTGATGTTTATAGCTTT-GGAGT-GATTTTAG 1947
||| ||| ||||| | ||||||||| |||||||||||||| ||| || || | | |||
Sbjct 1798 TACGGGTCCAGCCATTTTACTGAAAAAAGTGATGTTTATAG-TTTCGGGGTTG-TCCTAG 1855
Query 1948 CTGAA-CTTATCACTGGAGATAAGCCTGTCATAATGGTA-CAAAACACTCAAGAGATAGT 2005
| || ||||| |||||||| |||||||| |||| | || | |||||||| |||
Sbjct 1856 -TAAAGCTTATTACTGGAGAGAAGCCTGTTATAACCCTTTCAGAG-ACTCAAGAAATAAC 1913
Query 2006 TGCCCTTG-CAGAGCATTTCAGAGTTGCCATGAAAGAGAAGAGACT-TACAGATATCATA 2063
| ||| |||| |||||||| |||| ||||||||||| ||| | | || |||||
Sbjct 1914 AGGG-TTGGCAGATTATTTCAGACTTGCAATGAAAGAGAACAGATTGTTT-GAGATCATC 1971
Query 2064 GATGCTAGAATAAGAAATGACTGCAAACCGGAACAAGTAATGGCAGTAGCAAAGGTGGCA 2123
|||||| ||||||||||||| ||||| | |||||| || || ||||| ||||| | |||
Sbjct 1972 GATGCTCGAATAAGAAATGATTGCAAGCTGGAACAGGTGATTGCAGTGGCAAATCTAGCA 2031
Query 2124 ATGAAGTGTTTGA-GCTCGAAAGGaaaaaaaCGTCC-GAATATGAGAGAAGTTTTTACAG 2181
||| |||| ||| | || ||| || | || || || ||||||||||||| |||||
Sbjct 2032 TTGAGGTGTCTGAAGAA-GACAGGGAAGACTCGGCCAGA-TATGAGAGAAGTTGCTACAG 2089
Query 2182 AGTTGGAGAGGATTTGTACTTCTCCGGAAGATTCACAGGTGCATAAC-CGGATTGACgaa 2240
||||||||||| ||| | ||||| || |||| |||||||| || | ||||| | |
Sbjct 2090 CTTTGGAGAGGATCTGTTCATCTCCAGAGGATTTTCAGGTGCA-AATTCAAATTGATGGA 2148
Query 2241 gaagaagaa 2249
|||||||||
Sbjct 2149 GAAGAAGAA 2157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95530334460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5