BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31110.1 Length=2534 Score E Sequences producing significant alignments: (Bits) Value Ahg491636 jgi|Araly1|491636|fgenesh2_kg.7__1069__AT4G31110.1 3332 0.0 Ahg920884 jgi|Araly1|920884|scaffold_102165.1 867 0.0 Ahg472005 jgi|Araly1|472005|fgenesh2_kg.1__1959__AT1G17910.1 806 0.0 > Ahg491636 jgi|Araly1|491636|fgenesh2_kg.7__1069__AT4G31110.1 Length=2533 Score = 3332 bits (1804), Expect = 0.0 Identities = 2320/2563 (91%), Gaps = 59/2563 (2%) Strand=Plus/Plus Query 1 AGTAGAGAAACATGAGCAACGAAAGTACAAATTGCTCTTTCTTCTTGAATCTCTTCATGC 60 |||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||| || Sbjct 1 AGTATAGAGACATGAGCTACGAAAATACAAATTGCTCTTTCTTCTTGAATCTCTTCAAGC 60 Query 61 TGTTACTTTTGCTGATTTTTTATTCTGCAGATGCTTGTCAAAGGGAATGTGGAGGAATCT 120 | ||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| Sbjct 61 TACTACTTTTGCTGATCTTTTATTCTGCAGATCCTTGTCAAAGGGAGTGTGGAGGAATCG 120 Query 121 CTATCCCATACCCTTTCGGAATCGGAAAAGATTGCTGTCTCGAGAAGTATTACGAAATCG 180 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 CTATCCCATACCCTTTCGGAATCGGAAAAGATTGCTATCTCGAGAAGTATTACGAAATCG 180 Query 181 AATGTCGTAACACAACTTCAAGAAAGCTTGTTCCTTTACTTTCTTTTATTAACAAAGAAG 240 ||||||||| |||||||||||||||||||| ||||| |||||| | |||| |||||||| Sbjct 181 AATGTCGTATTACAACTTCAAGAAAGCTTGTCCCTTTCCTTTCTGTAATTAGCAAAGAAG 240 Query 241 TTGTGAGTATCTCTCTTCCGAGTGCAGATAGTCATTTTGCTTATGA-AGTATCTGATCAA 299 |||||||||||||||||||||||||||| ||||||||||||||| | | || |||||||| Sbjct 241 TTGTGAGTATCTCTCTTCCGAGTGCAGAAAGTCATTTTGCTTAT-ACAATAACTGATCAA 299 Query 300 GAACGTCATGAATCATTTGGCTTAGTTCGTGTCAAGTTCCCGATTACATCCGCCGGATGT 359 || ||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 300 GATCGTCATGAATCATTTGGGTTAGTTCGTGTCAAGTTCCCGATTACATCCACAGGATGT 359 Query 360 TTCAACGATGGAAAAGAGTCTGGAGGCGGATCAAAAATGAACTTCACGGGTAGCCCTTTC 419 |||| ||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| Sbjct 360 TTCAGCGATGGAAAAGAGTCTGCAGGCGGATTAAAAATGAACTTCACGGATACCCCTTTC 419 Query 420 TTCATTGACAG-ATCAAACAGCCTCATAGCGGCTGGTTGCAACAGCAAAGTGTCTTTGAT 478 ||||||| ||| | |||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 420 TTCATTGGCAGCA-CAAACAGCCTCATAGCGGTTGGTTGCAACAGCAAAGTGTCGTTGAT 478 Query 479 GTATATAAAGCCAAAAATGGTAGGATGCGAGTTGAGTTGCAATACAAGCAAAGACTCATA 538 |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | Sbjct 479 GTATATAAAGCCGAACATGGTAGGATGCGAGTTGAGTTGCAATACAAGCAAAGACTCGCA 538 Query 539 TAGCAATAGCATCCCTTTTGTCGAAGCGGGGTGCTCAAGCAACGTTTTACCCTATTCTCA 598 ||||||||||||||||||||| ||| |||| ||||| |||||||||||| |||||||||| Sbjct 539 TAGCAATAGCATCCCTTTTGTGGAAACGGGTTGCTCGAGCAACGTTTTATCCTATTCTCA 598 Query 599 GGACCAAGGTTGTCCAGAAGAGATAGCAGAAGAAACAGGATGCAATGGTATCGGATGTTG 658 ||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||| Sbjct 599 GGACCAAGGTTGTACAGAAGAGACACCAGAAGAAACAGGATGCAATGGTAACGGATGTTG 658 Query 659 CCAGGCAAGTCTACCTAACGAGCCTCAACAAGTTATTGGTATCAGAACAGAGAATAATGA 718 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 659 CCAGGCAAATCTACCTAACGAGCCTCAACAAGTTATTGGTATCAGAACAGAGAGCAATGA 718 Query 719 TGGAAACTCGACAACAAAAGTAGAGTGTACAGTCTCGGCCTTCTTAACAGATGAGATCTA 778 |||||||||||||||||||||| ||||||||| | ||||||||||| ||||| |||| Sbjct 719 TGGAAACTCGACAACAAAAGTACCGTGTACAGT-T--GCCTTCTTAACTGATGAAATCTT 775 Query 779 CGCTTTGCCGAAGGCGACCAAAACAGAACACTTACTTGCTAAGAGATATGCTACGGTTAG 838 | ||| |||||| |||| ||||| ||||||||||||||||||| |||||||||||||||| Sbjct 776 CACTTCGCCGAATGCGATCAAAAGAGAACACTTACTTGCTAAGCGATATGCTACGGTTAG 835 Query 839 TCTAGGATGGGTAATCCAGACGAGTAATAGA-TCTTTCCTGGACTCCTTGGCCTTGGCCT 897 | ||||||||||||||||||| | |||| | ||||| || | | | ||||||||| Sbjct 836 TATAGGATGGGTAATCCAGACTAAAAATA-ATTCTTT-CT--TCAAC-T--CCTTGGCCT 888 Query 898 GCAAAGACAGAGAAGATTACCGCAATACTACTAAC-TTG--G-A----AA-GAAAGTGTA 948 ||||| |||||||| ||||||||||||||| | || ||| | | || ||||||||| Sbjct 889 GCAAAAACAGAGAATATTACCGCAATACTAGTTACTTTGTTGAACCTGAAGGAAAGTGTA 948 Query 949 CATGCGGCAGAATCACTATATCTGAGACAAGTTATGCAAACTGTGGATGCACCTATGGTT 1008 |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 949 CATGCGCCAGAATCACTATATCTGAGTTAAGTTATGCAAACTGTGGATGCACCTATGGTT 1008 Query 1009 ACACAGGTAACCCATATGTTTTGAACGGATGCAAAGATATTGATGAATGTAAAGTCAAAT 1068 ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| Sbjct 1009 ACACAGGTAACCCATATATTTTGGATGGATGCAAAGATATTGATGAATGTAAAGTCAAAT 1068 Query 1069 TCGAATACTGTGGAA-AGACAGAAACTTGTGTGAATTTTGAAGGAGGCTATCGCTGCGTG 1127 |||||||||| || ||||||| |||||||||||||| || ||| ||||||| |||||| Sbjct 1069 ACGAATACTGT-AAAGAGACAGACACTTGTGTGAATTTGGAGGGAAGCTATCGATGCGTG 1127 Query 1128 CGCGATAAAACTAAAGCGATAATGATAGGCGCGGGTACGGGTTTTGGGGTCTTAGTCCTA 1187 ||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1128 GGCGATAAGACTAGAGCGATAATGATAGGGGCGGGTGCGGGTTTTGGGGTCTTAGTCCTT 1187 Query 1188 GTTGGTGGATTATGGTGGTTGAGAAAGTTTCTAATAAAGAGAAGGATCACAAAGAGAAAG 1247 ||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| ||| Sbjct 1188 GTTGGTGGAGTATGGTGGTTGAGAAAGTTTTTAATAAAGAGAAGGATGACAAAGAGGAAG 1247 Query 1248 AAAAAGTTCTTCAAACGTAACGGAGGACTACTATTGCTACAAGAATTAAATACCAGAGAA 1307 || ||||||||||||||||| || |||||||| |||| |||||||||||||||||||||| Sbjct 1248 AAGAAGTTCTTCAAACGTAATGGGGGACTACTTTTGCAACAAGAATTAAATACCAGAGAA 1307 Query 1308 GGCTATGTCGAAAAGACTAGAGTCTTCAACTCGAGAGAGCTAGAGAAAGCCACCGAGAAC 1367 ||| |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 1308 GGCAATGTTGAAAAGACAAGAATCTTCAACTCGAGAGAGCTAGAGAAAGCCACCGAGAAC 1367 Query 1368 TTCAGCGAAAACAGAGTTCTTGGACATGGTGGTCAAGGTACTGTGTACAAAGGTATGCTT 1427 |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 1368 TTCAGCGAAAACAGAGTTCTTGGACAAGGGGGTCAAGGTACTGTGTATAAAGGTATGCTC 1427 Query 1428 GTAGATGGTAGAACCGTTGCAGTAAAGAAATCCAAAGTTATAGATGAAGACAAACTCCAA 1487 || ||||||||||| |||||||| |||||||| ||||||||||||||||||||| | ||| Sbjct 1428 GTTGATGGTAGAACTGTTGCAGTCAAGAAATCTAAAGTTATAGATGAAGACAAATTACAA 1487 Query 1488 GAGTTCATCAACGAGGTCGTGATTCTCTCCCAAATAAACCATAGACACGTCGTCAAACTC 1547 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1488 GAGTTCATCAACGAGGTCGTGATTCTCTCCCAGATAAATCATAGACACGTCGTCAAACTC 1547 Query 1548 TTGGGATGTTGTCTTGAGACAGAAGTTCCTATGT-TGGTTTACGAGTTTATCATCAATGG 1606 ||||||||||||||||||||||||||||| || | |||||||||||||||||||||| || Sbjct 1548 TTGGGATGTTGTCTTGAGACAGAAGTTCCCAT-TCTGGTTTACGAGTTTATCATCAACGG 1606 Query 1607 TAACCTCTTTAAGCATATCCATGA-AGAAGAATCTGATGATTACACTATGTTATGGGGAA 1665 ||||||||| |||| |||||||| | ||||||||||||||||||||||| ||||||||| Sbjct 1607 CAACCTCTTTCAGCAAATCCATGATA-AAGAATCTGATGATTACACTATGGTATGGGGAA 1665 Query 1666 TGCGTCTACGCATAGCTGTGGATATTGCAGGAGCTCTTTCTTATCTTCATTCTTCTGCAT 1725 |||||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1666 TGCGTCTACGAATTGCTGTGGATATCGCAGGAGCTCTTTCTTATCTTCATTCTGCTGCAT 1725 Query 1726 CTTCTCCAATCTATCATAGAGATATCAAGTCAACAAATATATTACTAGACGAAAAGTACC 1785 ||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 1726 CTTCTCCGATATATCATAGAGATATAAAGTCAACAAACATATTACTAGACGAAAAGTACC 1785 Query 1786 GAGCCAAGGTGGCTGATTTTGGAACGTCAAGATCAGTAACCATAGATCAAACTCATTGGA 1845 ||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||| Sbjct 1786 GAGCCAAGGTGGCTGATTTCGGAACATCAAGGTCGGTAACCATAGATCAAACTCATTGGA 1845 Query 1846 CAACGGTTATTTCAGGTACAGTTGGGTATGTGGATCCGGAGTACTACCAGTCAAGCCAAT 1905 ||||| ||||||||||||| ||||||||||||||||| ||||| |||| ||| ||||||| Sbjct 1846 CAACGATTATTTCAGGTACGGTTGGGTATGTGGATCCAGAGTATTACCGGTCCAGCCAAT 1905 Query 1906 ATACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGATTTTAGCTGAACTTATCACTGGAG 1965 |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 1906 ATACCGAAAAGAGTGATGTTTATAGCTTTGGAGTGATTCTAGCGGAACTTATCACTGGAG 1965 Query 1966 ATAAGCCTGTCATAATGGTACAAAACACTCAAGAGATAGTTGCCCTTG-CAGAGCATTTC 2024 | ||||||||||||||||| |||||||||||||| ||| | ||| ||| ||||||||||| Sbjct 1966 AAAAGCCTGTCATAATGGTCCAAAACACTCAAGAAATAATAGCC-TTGGCAGAGCATTTC 2024 Query 2025 AGAGTTGCCATGAAAGAGAAGAGACTTACAGATATCATAGATGCTAGAATAAGAAATGAC 2084 ||| || ||||||||||||||||| || | |||||||| ||||||||||||||| |||| Sbjct 2025 AGACTTTCCATGAAAGAGAAGAGATTTTCTGATATCATGGATGCTAGAATAAGAGATGAT 2084 Query 2085 TGCAAACCGGAACAAGTAATGGCAGTAGCAAAGGTGGCAATGAAGTGTTTGAGCTCGAAA 2144 |||| |||||||||||||||||||||||||||| ||||||||||||||||||| || ||| Sbjct 2085 TGCAGACCGGAACAAGTAATGGCAGTAGCAAAGCTGGCAATGAAGTGTTTGAGTTCTAAA 2144 Query 2145 GGaaaaaaaCGTCCGAATATGAGAGAAGTTTTTACAGAGTTGGAGAGGATTTGTACTTCT 2204 ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2145 GGAAAGAACCGTCCGAATATGAGAGAAGCTTTTACAGAGTTGGAGAGGATTTGTACTTCT 2204 Query 2205 CCGGAAGATTCACAGGTGCATAACCGGATTGACgaagaagaagaagaagaagaagaggag 2264 ||||| |||||||||||||| || |||||||||||||||||||||||||||||||| || Sbjct 2205 CCGGAGGATTCACAGGTGCAGAATCGGATTGACGAAGAAGAAGAAGAAGAAGAAGA--AG 2262 Query 2265 gaagaagTTGTGACGACAATAAACAGAGGCGATTCTTGGAGCATTAGTGTTACTGCTCCA 2324 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2263 -AAGAAGTTGTGACGACAATAAACAGAGGCGATTCTTGGAGCATTGGTGTTACTGCTCCA 2321 Query 2325 GCCTTAAGTATTGTGGCTTCATCTCCTTCTTCAGATGTTGAACCATTGTTTCCTCGTCTC 2384 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2322 GCCTTTAGTATTGTGGCTTCACCTCCTTCTTCAGATGTTGAACCATTGTTTCCTCGTCTC 2381 Query 2385 ACATGGTGACTGACACTTAATTTGATGTTTCTTCTTACAACGTTT-GTGTAATATATTTG 2443 |||||||||| || | ||| || | | || | |||| |||||||| ||||| Sbjct 2382 ACATGGTGAC--ACTC--AATCAGAAACTAAAT-TTG-AT-GTTTTGTGTAATAAATTTG 2434 Query 2444 TAACATCTATATA--TCTTGTTACTTT-A-GTCTTGAGTTTTGTATTAAGGAACCTGTTA 2499 |||||| || ||| ||||| | ||| | ||||||||||||||||||||||||||||| Sbjct 2435 TAACAT-TA-ATAAGTCTTG--AGTTTTAAGTCTTGAGTTTTGTATTAAGGAACCTGTTT 2490 Query 2500 T-G---TT-TGT-TTTT--GTAAATTAATTGTGAGTGATGATG 2534 | | || ||| |||| ||||||||||||| |||||||||| Sbjct 2491 TTGAGATTATGTCTTTTTTGTAAATTAATTGTCAGTGATGATG 2533 > Ahg920884 jgi|Araly1|920884|scaffold_102165.1 Length=2419 Score = 867 bits (469), Expect = 0.0 Identities = 1640/2180 (75%), Gaps = 181/2180 (8%) Strand=Plus/Plus Query 311 ATCATTTGGCTTAGTTCGTGTCAAGTTCCCGATTACATCCGCCGGATGTTTC-AACGATG 369 |||||| || | | |||||||||| || ||| ||||||| || |||| | || |||| Sbjct 306 ATCATTCGGATCAATTCGTGTCAAAAGCCGGATAACATCCGTTGGCTGTTCCGAA-GATG 364 Query 370 GAAAAGAGTCTGGAGGCGGATCAAAAATGAACTTCACGGGTAGCCCTTTCTTCATT-GAC 428 ||||||| |||||| ||| | |||| || |||| ||||||||| ||| || | Sbjct 365 GAAAAGAATCTGGA-TCGG-T----TTTGAATTTGACGGATAGCCCTTTTTTCTTTGGGT 418 Query 429 AGATCAAACAGCCTCATAGCGGCTGGTTGCAACAGCAAAGTGTCTTTGATGT-ATATAAA 487 | ||||||||| ||||| ||||||||||||||| | || |||| | | || | Sbjct 419 TTA-GAAACAGCCTTGTAGCGATTGGTTGCAACAGCAAGGCCTCGTTGA-CTAACATTGA 476 Query 488 GCCAAA-AATGGTAGGATGCGAGTTGAGTTGCAATACAAGC-AA-AG-ACTCAT-ATAGC 542 |||||| || ||| ||||||||||||| |||| ||||||| || || | | | |||| Sbjct 477 GCCAAACAA-GGTGGGATGCGAGTTGAACTGCACTACAAGCAAAGAGAAGT-TTCCTAGC 534 Query 543 AATAGCATCCCTTTTGTCG---AAGCGGGGTGCT-CAAGCAACGTTTTACCCTATTCTCA 598 || |||||||||||| ||| || | || || | | ||||||| || || ||| || | Sbjct 535 AAAAGCATCCCTTTTTTCGACAAAACCGGATG-TACTAGCAACGCGTTGCCTTATACTTA 593 Query 599 GGAC-CAAGG-TTGT-C-CAGAAGAGA-TAGCAGAAGAAACAGGATGCAATGGTATCGGA 653 || | || |||| | |||| | | | |||||||| | | || |||| | |||| Sbjct 594 -CACTC-CGGTTTGTACAAAGAACAAAGGGGAAGAAGAAAGAAGCTGTGATGGCAACGGA 651 Query 654 TGTTGCCAG-GCAAGTCTA-CC--TAACGAGCCTCAACAAGTTATTGGTATCAGAACAGA 709 || || | | |||||||| || | | ||| ||||||| || || ||| ||| || ||| Sbjct 652 TGCTGTC-GTTCAAGTCTACCCGGTGATGAGGCTCAACAGGTGATCGGTGTCAAAATAGA 710 Query 710 GA---ATAATGATGGAAACTCGACAACAAAAGTAGAGTGTACAGTCTCGGCCTTCTTAAC 766 || | || |||||||| |||| | | | ||| || ||| || || |||||||| Sbjct 711 GAGCTTTGATCATGGAAACACGAC-A-AGCCG-AGAATG--CAGAGTC-GCTTTCTTAAC 764 Query 767 AGATG-AGATCTACGCTTTGCCGAAGGCGACCAAAACAGAACA-CTTACTTGCT-AAGAG 823 ||||| || ||||| | || | || || ||| || ||| | | || ||||| ||| | Sbjct 765 AGATGAAG-TCTACACGTTATCTAATGCAACCGAACCAG-AGAGGTTTTTTGCTAAAG-G 821 Query 824 ATATGCTACGGTTAGTCTAGGATGGGTAATCCAGACGAGTAATAGATCTTTCCTGGACTC 883 ||||||| ||||| | |||||||| | ||||| | ||| || ||||| ||| Sbjct 822 GTATGCTATAGTTAGAATTGGATGGGTCCTTCAGACAAAAAATCTTTCATTCCTAAACT- 880 Query 884 CTTGGCCTTGGCCTGCAAAGACAGAGAAGATTACCGCA-ATAC-TAC-TA-ACT-TGGAA 938 | ||| | ||||||| ||| |||||| || || | | || ||| || | | || || Sbjct 881 C----CCTAAG-CTGCAAAAACACAGAAGAGTA-CG-ATAAACTTACATATAATATGCAA 933 Query 939 ---AG-A-AAG-TGTACATGCGGCAGA-ATCACTA-TATCTGAGA-CAAGTTATGCAAAC 989 || | ||| || | |||| || | ||||| | || || || ||| |||||||||| Sbjct 934 CTCAGAACAAGCTGCAGATGCAACA-ATATCACCACTA-ATGGGACCAA-TTATGCAAAC 990 Query 990 TGTGGATGCACCTA-TGGTTACACAGGTAACCCATA-TGTTTTGAACGGATGCAAAGATA 1047 ||||||||| | | ||||| |||||||||||||| | ||| ||||||| |||||| Sbjct 991 TGTGGATGC-GCGAGAGGTTATACAGGTAACCCATACCGCATTG-GCGGATGCGAAGATA 1048 Query 1048 TTGATGAATG--TAA-A-GTCAAAT-TCGAAT---ACT-G-TGG-A----A-AGACA--G 1089 || |||| || ||| | | | ||| || || | | | ||| | | ||| | | Sbjct 1049 TTAATGACTGCCTAATACG-C-AATCCCG-ATGGCAGTCGCTGGCACTGTAGAGAAAGCG 1105 Query 1090 AAACTTGTGTGAATTTTG-AAGGAGGCTATCGCTGCGTGCGCGATAAAACTAAAGCGA-T 1147 | ||||| ||||| | || ||| | | | |||||| ||||||| ||| ||| | | Sbjct 1106 ACACTTGCGTGAA-TGTGCCTGGAAGTTTTTATTGCGTGGGCGATAAGACTGGAGC-AGT 1163 Query 1148 AATGATAGGCGCGGGTACGGGTTTTGGGGTCTTAGTCCTAGTTGGTGG-ATTATGGTGGT 1206 ||||||||||| ||| | ||||| || |||||||||||| ||||| ||| |||||| Sbjct 1164 AATGATAGGCGTAGGTGCAGGTTTAGGCATCTTAGTCCTAGCAGGTGGAATT-TGGTGGC 1222 Query 1207 TGAGAAAGTTTC-TAATAAAGAGAAGGATCACAAAGA-G-AAAGAAAAAGTTCTTCAAAC 1263 |||||||||| | | | |||||||| ||| | |||| | |||| |||| ||||| ||| Sbjct 1223 TGAGAAAGTTCCTTGA-AAAGAGAAAGATGAGTAAGAGGAAAAG-AAAA-TTCTTTGAAC 1279 Query 1264 GTAACGGAGGACTACTATTGCTACAAGAATTAAATACCAGAGAAGGCT-ATGTCGAAAAG 1322 |||| || |||||| | |||| |||| || || |||| |||||||| | | ||||| ||| Sbjct 1280 GTAATGGGGGACTATTGTTGCAACAACAACTACATACAAGAGAAGG-TAACGTCGAGAAG 1338 Query 1323 ACTAGAGTCTTCAACTCGAGAGAGCTAGAGAAA-GCCACCGAGAA-CTTCAGCGAAAACA 1380 || ||| | |||| ||||| ||| || || ||| ||||| || || ||| |||||||| | Sbjct 1339 ACAAGAATATTCACCTCGACAGAACTTGA-AAAGGCCACTGA-AAGCTTTAGCGAAAATA 1396 Query 1381 -GAGTTCTTGGACATGGTGGTCAAGGTACTGTGTACAAAGGTATGCTTGTAGATGGTAGA 1439 || | |||||||| |||||||| |||||||| ||||| || |||||||||||||||||| Sbjct 1397 GGA-TACTTGGACAAGGTGGTCAGGGTACTGTATACAAGGGAATGCTTGTAGATGGTAGA 1455 Query 1440 ACCGTTGCAGTAAAGAAATCCAAAGTTATAGATGAAGACAAACTCCAAGAGTTCATCAAC 1499 || || || || |||||||||| |||| |||||||||||||||| | ||||||||||| Sbjct 1456 ACTGTCGCTGTCAAGAAATCCACAGTTGTAGATGAAGACAAACTAGAGGAGTTCATCAAT 1515 Query 1500 GAGGTCGTGATTCTCTCCCAAATAAACCATAGACACGTCGTCAAACTCTTGGGATGTTGT 1559 || ||||| |||||||| || || ||||||||||| |||||||| || |||||||||||| Sbjct 1516 GAAGTCGTCATTCTCTCTCAGATTAACCATAGACATGTCGTCAAGCTTTTGGGATGTTGT 1575 Query 1560 CTTGAGACAGAAGTTCCTATGT-TGGTTTACGAGTTTATCATCAATGGTAACCTCTTT-- 1616 ||||| ||||||||||| || | |||||||||||||||| ||||||||||||| ||| Sbjct 1576 CTTGAAACAGAAGTTCCAAT-TCTGGTTTACGAGTTTATTGTCAATGGTAACCT-TTTCC 1633 Query 1617 AAGCATATCCATGAAGAAGAATCTGATGATTACACTATG-TTATGGGGAATGCGTC-TAC 1674 || ||||||||| |||||||||||||||||||| || | |||||| |||| | | | Sbjct 1634 AA-CATATCCAT---GAAGAATCTGATGATTACACGGTGAGT-TGGGGAGTGCG-CTTGC 1687 Query 1675 GCATAGCTGTGGATATTGCAGGAGCTCTTTCTTATCTT-CATTCTTCTGCATCTTCTCCA 1733 |||| || ||||||||||| ||||||||||| ||| || |||||| |||||| ||||||| Sbjct 1688 GCATTGCCGTGGATATTGCTGGAGCTCTTTCGTAT-TTGCATTCTGCTGCATGTTCTCCA 1746 Query 1734 ATCTATCATAGAGATATCAAGTCAACAAATATATTACTAGACGAAAAGTACCGAGCCAAG 1793 || ||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||| || Sbjct 1747 ATTTATCACAGAGATATAAAGTCAACAAACATATTACTAGACGAGAAGTATCGAGCTAAA 1806 Query 1794 GTGGCTGATTTTGGAACGTCAAGATCAGTAACCATAGATCAAACTCATTGGACAACGGTT 1853 ||| |||||||||| || |||||||||||||| ||||||| ||||| |||||||| || Sbjct 1807 GTGTCTGATTTTGGTACTTCAAGATCAGTAACGGTAGATCATACTCACTGGACAACAATT 1866 Query 1854 ATTTCAGGTACAGTTGGGTATGTGGATCCGGAGTACTACCAG-TCAAGCCAATATACTGA 1912 |||||||||||||| || ||||||||||| |||||||| | | || ||||||||||| || Sbjct 1867 ATTTCAGGTACAGTAGGATATGTGGATCCAGAGTACTA-CGGATCCAGCCAATATACCGA 1925 Query 1913 AAAGAGTGATGTTTATAGCTTTGGAGTGAT-TTTAGCTGAACTTATCACTGGAGATAAGC 1971 |||||||||||||||||||| || || || || | ||||||||| || ||||| || | Sbjct 1926 TAAGAGTGATGTTTATAGCTTCGGGGTCATCCTT-GTTGAACTTATTACAGGAGAGAAAC 1984 Query 1972 CTGTCATAATGGTACAAAACACTCAAGAGAT-AGTTGCCCTT-GCAGAGCATTTCAGAGT 2029 |||| |||| | | || ||| || || || | || || |||||||||||||| Sbjct 1985 CTGTAATAACCCTTCCGAATTCTCGGGAAATAAG-AG-GGTTGGCGGAGCATTTCAGAGT 2042 Query 2030 TGCCATGAAAGAGAAGAGA--CTTACAGATATCATAGATGCTAGAATAAGAAATGACTGC 2087 ||||||||||||||| | | ||| ||||| || |||||| |||| | | ||| ||| Sbjct 2043 TGCCATGAAAGAGAACAAATTCTTT--GATATTATGGATGCTCGAATCACAGATGGTTGC 2100 Query 2088 AAACCGGAACAAGTAATGGCAGTAGCAAAGGTGGCAA-T-GAAGTGTTTGAGCTCGAAAG 2145 ||||| |||||||||||||||||||| || | |||| | || ||| ||| || |||| Sbjct 2101 AAACCAGAACAAGTAATGGCAGTAGCGAATCTAGCAAATAGA--TGTCTGAATTC-AAAG 2157 Query 2146 Gaaaaaaa-CGTCCGAATATGAGA-GAAGTTTTTACAGAGTTGGAGAGGATTTGTACTTC 2203 | ||| || || || ||||||||| || || ||||| ||| | |||| ||| ||| | || Sbjct 2158 GGAAAGAAGCGCCCAAATATGAGACGA-GTGTTTACCGAGCTAGAGAAGATCTGTTCATC 2216 Query 2204 TCCGGAAGATTCACAGGTGCATAACCGGAT--TGACgaa-gaagaagaagaagaagaaga 2260 ||| || ||||||| ||| ||| | || |||| || || | || ||||| ||||| Sbjct 2217 TCCAGAGGATTCACTGGTTCAT--CTTGAAAATGAC-AATGATGTGGATGAAGAGGAAGA 2273 Query 2261 ggaggaag-aagTTGTG-ACGACAATAAACAGAGGCGATTCTTGGAGCATTAGTGTTACT 2318 ||||| || | | | |||| || | || | || | ||| |||| ||| |||| Sbjct 2274 --AGGAATTAA-TACAGCA-GACA-TAG-CTGA--C-ATG-T-GGACCATTGGTGCTACT 2322 Query 2319 GCTCCAGCCT-TAAGTATTGTGGCTTCATCTC-CTTC-TTCAGATGTTGAACCATTGTTT 2375 |||||||||| || ||||||| ||||| ||| || | || ||| ||||||||||| || Sbjct 2323 GCTCCAGCCTCTA-GTATTGTTGCTTCGTCTTTCT-CGTT-AGAAGTTGAACCATTACTT 2379 Query 2376 CCTCGTCTCACATGGTGACT 2395 ||||| | |||||||||||| Sbjct 2380 CCTCGCCCCACATGGTGACT 2399 > Ahg472005 jgi|Araly1|472005|fgenesh2_kg.1__1959__AT1G17910.1 Length=2213 Score = 806 bits (436), Expect = 0.0 Identities = 877/1089 (81%), Gaps = 33/1089 (3%) Strand=Plus/Plus Query 1176 GTCTTAGTCCTAGTTGGTGGAT-TATGGTGGTTGAGAAAGTTTCTAATAAAGAGAAGGAT 1234 |||||| || ||| ||||| | |||||||||||| |||| |||| | ||| | |||||| Sbjct 1087 GTCTTAATCGTAGCCGGTGG-TATATGGTGGTTGAAAAAGCTTCTTAGAAAAAAAAGGAT 1145 Query 1235 CACAAAGAGAAAGA-AAAAGTTCTTCAAACGTAACGGAGGACTACTATTGCTA-CAAGAA 1292 |||||| | |||| ||| |||||||||||||| ||||||||| | |||| | ||| | Sbjct 1146 GACAAAGCGCAAGAGGAAA-TTCTTCAAACGTAATGGAGGACTATTGTTGC-AGCAACAG 1203 Query 1293 TTAAATACCAGAGAAGGCTA-TGTCGAAAAGACTAGAGTCTTCAACTCGAGAGAGCTAGA 1351 |||| ||| | ||||| | || ||||| || | | | |||| ||| |||||||| || Sbjct 1204 TTAACTACAACTCAAGGC-AGAGTTGAAAAAACAAAAATATTCAGCTCAAGAGAGCTGGA 1262 Query 1352 GAAAGCCACCGAGAACTTCAGCGAAAACAGAGTTCTTGGACATGGTGGTCAAGGTACTGT 1411 |||||||| || ||||||| |||||| || ||| ||||||| ||||| ||||| ||||| Sbjct 1263 AAAAGCCACTGATAACTTCAACGAAAATAGGGTTATTGGACAAGGTGGCCAAGGAACTGT 1322 Query 1412 GTACAAAGGTATGCTTGTAGATGGTAGAACCGTTGCAGTAAAGAAATCCAAAGTTATAGA 1471 ||||||||||||||||||||||||||| | |||||||| ||||||||||| ||| |||| Sbjct 1323 GTACAAAGGTATGCTTGTAGATGGTAGGTCTGTTGCAGTCAAGAAATCCAATGTTGTAGA 1382 Query 1472 TGAAGACAAACTCCAAGAGTTCATCAACGAGGTCGTGATTCTCTCCCAAATAAACCATAG 1531 |||||||||||| ||||||||||||||||| ||| | ||||||||||| || |||||||| Sbjct 1383 TGAAGACAAACTACAAGAGTTCATCAACGAAGTCATTATTCTCTCCCAGATCAACCATAG 1442 Query 1532 ACACGTCGTCAAACTCTTGGGATGTTGTCTTGAGACAGAAGTTCCTATG-TTGGTTTACG 1590 ||||||||| || || |||||||||||||||||||| ||||||||| | ||| |||||| Sbjct 1443 ACACGTCGTGAAGCTTTTGGGATGTTGTCTTGAGACCGAAGTTCCTGTTCTTG-TTTACG 1501 Query 1591 AGTTTATCATCAATGGTAACCTCTTTAAGCATATCCATGAAGAAGAATCTGATGATTACA 1650 ||||||||| ||| || ||||||||| ||||| ||||||||||| | ||| || |||| Sbjct 1502 AGTTTATCACCAACGGAAACCTCTTTCAGCATCTCCATGAAGAAT--T-TGACGACTACA 1558 Query 1651 CTATGTTATGGGGAATGCGTCTACGCATAGCTGTGGATATTGCAGGAGCTCTTTCTTATC 1710 | |||||||||| | ||| | ||||| ||||| ||||| || |||||| |||| |||| Sbjct 1559 CGGTGTTATGGGGTGTACGTATGCGCATTGCTGTAGATATCGCGGGAGCTTTTTCGTATC 1618 Query 1711 TTCATTCTTCTGCATCTTCTCCAATCTATCATAGAGATATCAAGTCAACAAATATATTAC 1770 | || || |||||| ||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 1619 TACACACTGCTGCATGTTCTCCAATTTATCACAGAGATATCAAGTCAACAAACATATTAC 1678 Query 1771 TAGACGA-AAAGTACCGAGCCAAGGTGGCTGATTTTGGAACGTCAAGATCAGTAACCATA 1829 |||| || ||| |||||||| || ||| |||| |||||||| ||||||||||| ||||| Sbjct 1679 TAGATGAGAAA-TACCGAGCTAAAGTGTCTGACTTTGGAACTTCAAGATCAGTTTCCATA 1737 Query 1830 GATCAAACTCATTGGACAACGGTTATTTCAGGTACAGTTGGGTATGTGGATCCGGAGTAC 1889 ||||| ||||||||||||||||| || || |||||||| |||||||||||||| || ||| Sbjct 1738 GATCATACTCATTGGACAACGGTAATATCGGGTACAGTCGGGTATGTGGATCCAGAATAC 1797 Query 1890 TACCAGTCAAGCCAATATACTGAAAAGAGTGATGTTTATAGCTTT-GGAGT-GATTTTAG 1947 ||| ||| ||||| | ||||||||| |||||||||||||| ||| || || | | ||| Sbjct 1798 TACGGGTCCAGCCATTTTACTGAAAAAAGTGATGTTTATAG-TTTCGGGGTTG-TCCTAG 1855 Query 1948 CTGAA-CTTATCACTGGAGATAAGCCTGTCATAATGGTA-CAAAACACTCAAGAGATAGT 2005 | || ||||| |||||||| |||||||| |||| | || | |||||||| ||| Sbjct 1856 -TAAAGCTTATTACTGGAGAGAAGCCTGTTATAACCCTTTCAGAG-ACTCAAGAAATAAC 1913 Query 2006 TGCCCTTG-CAGAGCATTTCAGAGTTGCCATGAAAGAGAAGAGACT-TACAGATATCATA 2063 | ||| |||| |||||||| |||| ||||||||||| ||| | | || ||||| Sbjct 1914 AGGG-TTGGCAGATTATTTCAGACTTGCAATGAAAGAGAACAGATTGTTT-GAGATCATC 1971 Query 2064 GATGCTAGAATAAGAAATGACTGCAAACCGGAACAAGTAATGGCAGTAGCAAAGGTGGCA 2123 |||||| ||||||||||||| ||||| | |||||| || || ||||| ||||| | ||| Sbjct 1972 GATGCTCGAATAAGAAATGATTGCAAGCTGGAACAGGTGATTGCAGTGGCAAATCTAGCA 2031 Query 2124 ATGAAGTGTTTGA-GCTCGAAAGGaaaaaaaCGTCC-GAATATGAGAGAAGTTTTTACAG 2181 ||| |||| ||| | || ||| || | || || || ||||||||||||| ||||| Sbjct 2032 TTGAGGTGTCTGAAGAA-GACAGGGAAGACTCGGCCAGA-TATGAGAGAAGTTGCTACAG 2089 Query 2182 AGTTGGAGAGGATTTGTACTTCTCCGGAAGATTCACAGGTGCATAAC-CGGATTGACgaa 2240 ||||||||||| ||| | ||||| || |||| |||||||| || | ||||| | | Sbjct 2090 CTTTGGAGAGGATCTGTTCATCTCCAGAGGATTTTCAGGTGCA-AATTCAAATTGATGGA 2148 Query 2241 gaagaagaa 2249 ||||||||| Sbjct 2149 GAAGAAGAA 2157 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95530334460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5