BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31115.2
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328609 jgi|Araly1|328609|fgenesh1_pm.C_scaffold_7000836 917 0.0
Ahg937473 jgi|Araly1|937473|scaffold_501664.1 183 2e-45
> Ahg328609 jgi|Araly1|328609|fgenesh1_pm.C_scaffold_7000836
Length=738
Score = 917 bits (496), Expect = 0.0
Identities = 582/625 (93%), Gaps = 0/625 (0%)
Strand=Plus/Plus
Query 368 TTCATAGTGGCAAAAGAGCAATGGTGATTTCTAGTTTAAAGAAAGCGAATATCTCTGCTT 427
|||||| ||| | |||| |||||||||||||||||| ||||||||||||| | |||||||
Sbjct 113 TTCATATTGGTAGAAGAACAATGGTGATTTCTAGTTCAAAGAAAGCGAATCTTTCTGCTT 172
Query 428 CGAGGAAGCAGAGAATTAAGCTAGAGATTAATGGAGAAAAGGAGCTGACTTTCAGTGAGT 487
||||||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||||
Sbjct 173 CGAGGAAGCAGAGAATTAAGCTACAGATTGATGGAGAAAAGGAGCTTACTTTTAGTGAGT 232
Query 488 TTTTGAAACACCCATCTGGCATGGAGGCTGTGATCAACGCAAAGGCTTTGCAGAGTTACC 547
|||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct 233 TTTTGAAACACCCATCTGGCATGGAGGCCGTAATCAACGCTAAGGCTTTGCAGAGTTATC 292
Query 548 ATTTAGTTGATGATAGTGATGATACTTACAGATGTACATTGCCAAAAGTTCAGTTAATGA 607
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATTTAGTTGAGGATACTGATAATACTTACAGATGTACATTGCCAAAAGTTCAGTTAATGA 352
Query 608 GTTTTGAAGTTTATCCAGTACTGGTTTTAAGGGTCACTCCCACACAGGAAGATTGTACAG 667
| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 353 GCTTTGAAGTTTCTCCAGTACTGGTTTTAAGGGTCACTCCCACACAGGAAGAATGTACAG 412
Query 668 TTGAGCTGCTTTCCTGCAAGTTGGAAGGATCAGAGTTATTGGAGAACCAAAGTGAAAGGT 727
||||||||||||||||||||||||| || ||| |||| |||||| ||||||||||||||
Sbjct 413 TTGAGCTGCTTTCCTGCAAGTTGGAGGGGTCAAAGTTGGTGGAGAGCCAAAGTGAAAGGT 472
Query 728 TTTCAGCAATAATGACAAACTGCATGACTTGGAACATGGAACATCCAGAGCCATTTTTGG 787
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 473 TTTCAGCAATTATGACAAACTGTATGACTTGGAACATGGAACATCCAGAGCCATTTTTGG 532
Query 788 AAGTTGACGTGAGATTGAATGTCACTCTAGAGATCTCAACGCGACCGTTCACAATGCTTC 847
||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 533 AAGCTGACGTGAGATTGAATGTCACTCTAGAGATCTCAACACGACCGTTCACTATGCTTC 592
Query 848 CAGTATCAGCTGTTGAGGCTCCTGGGAATCTAGTAATGCAGACACTGGTCGATACACTGG 907
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 593 CAGTATCCGCTGTTGAGGCTCCTGGGAATCTTGTAATGCAGACACTGGTAGATACACTGG 652
Query 908 TTCCCCTTCTGCTTCAGCAATTACTTAAAGATTACGACGAATGGATTAAAAAACAGCAAC 967
| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 653 TCCCCCTTCTGCTTCAGCAATTACTTAAAGATTACGACGAATGGGTTCAAAAACAGCAAC 712
Query 968 GGAACTCCTTAAACGCAACTTCTTA 992
| ||| ||||||| || | ||||||
Sbjct 713 GAAACACCTTAAATGCTAGTTCTTA 737
Score = 178 bits (96), Expect = 9e-44
Identities = 103/106 (97%), Gaps = 2/106 (2%)
Strand=Plus/Plus
Query 169 ATGGATATTGGGATTAGAAACGGATGGAGAACTCCGA-AGACTTCAGAAAGCTCTGGATC 227
||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1 ATGGATATTGGGATTAGCAACGGATGGAGAACTCCGACA-ACTTCAGAAAGCTCTGGATC 59
Query 228 TAATTTCCTGGGTTTGCTTAGATCCTACCCTAACACCATCCCCAGG 273
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAATTTCCTGGGTTTGCTTAGATCCTACCCTAACACCATCCCCAGG 105
> Ahg937473 jgi|Araly1|937473|scaffold_501664.1
Length=449
Score = 183 bits (99), Expect = 2e-45
Identities = 119/129 (92%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 450 AGAGATTAATGGAGAAAAGGAGCTGACTTTCAGTGAGTTTTTGAAACACCCATCTGGCAT 509
||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||
Sbjct 222 AGAAATTAATGGAGAAAAGAAGCTGACTTTCAATGAGTTTTTGAAAGACCCATCTGGCAT 281
Query 510 GGAGGCTGTGATCAACGCAAAGGCTTTGCAGAGTTACCATTTAGTTGATGATAGTGATGA 569
|||||||||||||||||| ||||||||||||||||| |||||| |||| |||| |||| |
Sbjct 282 GGAGGCTGTGATCAACGCTAAGGCTTTGCAGAGTTATCATTTAATTGAGGATACTGATAA 341
Query 570 TACTTACAG 578
|||||||||
Sbjct 342 TACTTACAG 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5