BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31130.1
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491631 jgi|Araly1|491631|fgenesh2_kg.7__1064__AT4G31130.1 1317 0.0
> Ahg491631 jgi|Araly1|491631|fgenesh2_kg.7__1064__AT4G31130.1
Length=1042
Score = 1317 bits (713), Expect = 0.0
Identities = 801/842 (95%), Gaps = 12/842 (1%)
Strand=Plus/Plus
Query 187 CCACAAATCTCCAGATTCATTCGTCGTCTCGGTTAAGGTTAGACGGAGAAGAAGATACAA 246
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 160 CCACAAATCTCCAGATTCATTCGTCGTCTCGGTTAATGTTAGACGGAGAAGAAG--A-GA 216
Query 247 CAAATATGGCGGTTAGTATGAAACAAATGTCGTTGGTCGTCTCTGCTTTGGGCGTCTTAT 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 217 CAAATATGGCGGTTAGTATGAAACAAATGTCGTTGGTCGTCTCTGCTTTGGGCGTCTTGT 276
Query 307 CCTTTGTTTTGGGAGTTATCGCCGAGAACAAGAAGCCTGCGTCTGGGACTCCAATAAGTG 366
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 277 CCTTTGTTTTGGGAGTTATCGCGGAGAACAAGAAGCCTGCGTCTGGGACTCCGATAAGCG 336
Query 367 GAAAAGGAGTAGTTATCTGCAAATACCCATCTGATCCAACTGTTGCCTTGGGATACCTTT 426
|||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 337 GAAAGGGAGTAGTTATCTGCAAATATCCATCTGATCCATCTGTTGTCTTGGGATACCTTT 396
Query 427 CTGCTGCTTTTCTCCTTGCCTGCACTGTAGCAGGATACAAATCCTTGTTCATCTCTTACA 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CTGCTGCTTTTCTCCTTGCCTGCACTGTAGCAGGATACAAATCCTTGTTCATCTCTTACA 456
Query 487 AGGGAAAGTCTGTTCCTAACTCTGTCTTGTTCAAAAGCACCAGCTTCTCTGTGTTCTTCA 546
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGGGAAAATCCGTTCCTAACTCTGTCTTGTTCAAAAGCACCAGCTTCTCTGTGTTCTTCA 516
Query 547 ACATTGCCTTGATAACATCTGGACTGGCCTTGTCTCTGTTGCTCTGGCCAACCATTACAG 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 ACATTGCCTTGATAACATCTGGACTGGCCTTGTCTCTGTTGCTCTGGCCAACCATTACAG 576
Query 607 AACAACTTCACTTGACCCGTAATGTTCACCGAAACTTAGAAACCAGTTGCCCCACGGCTA 666
| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 577 AGCAACTTCACTTGACCCGTAATGTTCACCGAAACTTAGAGAGCAGTTGCCCCACGGCTA 636
Query 667 AGACCGGTCTGCTTGGTGGAGGTGCCTTTGTGTCTTTGGACTCGTGCCTTTTCTGGTTGG 726
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 637 AGACCGGTCTGCTTGGTGGAGGTGCCTTTGTGTCTTTGGACTCATGCCTTTTCTGGTTGG 696
Query 727 TTGCTCTGATGCTCGCTGATAACGCCCGTGAAGACCATTTTGATGAAGTTGAAAGCAGAA 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 697 TTGCTCTGATGCTCGCTGATAACGCCCGTGAAGACCATTTTGATGAAGTTGAAAACAGAA 756
Query 787 GCATCGATGGGAACTCTTCCTCCAGGGATGTGAATCTCAAGATTGATGCTTGAGAGAATG 846
||| ||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 757 ACATGGATGGCAACTCTGCCTCGAGGGATGTTAATCTCAAGATTGATGCTTGAGAGAATG 816
Query 847 ATATGCTTTTATTGGTATTGGGTATAAGAAGGGtttttca-tttgttttctacttgtttg 905
|||||| || ||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 817 ATATGCCTT-ATTGGTATTGGGTATAAGAAGGGGTTTT-AGTTTGTTTTCTACTTGTTTG 874
Query 906 attaggaaaataataatttgtttcttctg-ttgtt-t--ttttt-ttttttAATGATTGG 960
|||||||||||||| |||||||||||||| || || | ||||| ||||||||||||| |
Sbjct 875 ATTAGGAAAATAATCATTTGTTTCTTCTGGTT-TTCTACTTTTTCTTTTTTAATGATTTG 933
Query 961 CTAGAATGTTATGAAACCCATCTCTGCACCTTGATGCATTGTGATTCATAAGCTGTATCT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 934 CTAGAATGTTATGAAACCCATCTCTGCACCTTGATGCATTGTGATTCATAAGTTGTATAT 993
Query 1021 GT 1022
||
Sbjct 994 GT 995
Score = 171 bits (92), Expect = 1e-41
Identities = 110/117 (94%), Gaps = 7/117 (6%)
Strand=Plus/Plus
Query 1 AAGATAAATATGGAATC-TTTTATTT-T-TTGGTCAACAGAATCTTG-AAGAGCCCAAAA 56
||||||||||||||||| |||||||| | |||||||||||||||||| |||||||| ||
Sbjct 1 AAGATAAATATGGAATCTTTTTATTTATATTGGTCAACAGAATCTTGAAAGAGCCC--AA 58
Query 57 CAACAACAACACTCGGAGACTTTTTAGGGCTCATCCCCGAATTATCAGTGCAAGTGG 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 -AACAACAACACTCGGAGACTTTTTAGGGCTCATCCCCGAATTATCAGTGCAAGTGG 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39571587846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5