BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31150.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491628 jgi|Araly1|491628|fgenesh2_kg.7__1061__AT4G31150.1 1653 0.0
> Ahg491628 jgi|Araly1|491628|fgenesh2_kg.7__1061__AT4G31150.1
Length=1241
Score = 1653 bits (895), Expect = 0.0
Identities = 1155/1274 (91%), Gaps = 44/1274 (3%)
Strand=Plus/Plus
Query 20 TCTCCGGCGACTGAACTTTTTCTGGAAATGGATAGTGAAGGAGCTTCAAGCGAGTCTTCT 79
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TCTCCGGCGACTGAGCTTTTTCTGGAAATGGATAGTGAAGGAGCTTCTAGCGAGTCTTCT 60
Query 80 TCTTCTGGAGATCAGCTCGAGAAGTGGACAGAAGAGCAGGATGAGCTGAAGAAGAAACTG 139
|| ||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||| ||
Sbjct 61 TCGTCTGGGGATCAGCTCGAGAAGTGGATAGAAGAGCAGGATCAGCTTAAGAAGAAATTG 120
Query 140 ATCGCGTACGATGACTTCACATGGAAGTTATCTTCATCAACGGAACTGTCTCAGGGATCG 199
|| ||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||
Sbjct 121 ATTGCGTACGATGACTTCTCATGGAAGTTATCTTCATCAATGGAACTATCGCAGGGATCG 180
Query 200 GAGATACTTAAGTATGTTGGAGGTGTAGACATGAGCTTTTGCAAAGAAGATTCTTCCGTC 259
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GAGATGCTTAAGTACGTTGGAGGTGTAGACATGAGCTTTTGTAAAGAAGATTCTTCCGTC 240
Query 260 GCATGCGCTTGTCTCGTCGTTCTTGAGCTTCCTTCTCTCCGTGTAGTCCACCATGACTTC 319
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GCATGCGCTTGTCTCGTCGTTCTTGAGCTACCTTCTCTCCGTGTAGTCCACCATGACTTC 300
Query 320 TCTCTTCTCCGCCTCCATGTTCCTTATGTCCCTGGATTTCTTGCCTTTCGTGAGGCTCCG 379
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCTCCTCCGTCTTCATGTTCCTTATGTCCCTGGATTTCTTGCCTTTCGTGAGGCTCCG 360
Query 380 GTTCTTTTGCAGATTCTGCAGAAGATGAGAGATGAGAAGCATCCATTCTATCCTCAGGTA 439
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 361 GTTCTTTTGCAGATTCTGCAAAAGATGAGAGATGATAAGCATCCTTTCTATCCTCAGGTA 420
Query 440 CTGATGGTGGATGGAAATGGAATACTTCATCCACGAGGATTTGGCTTGGCGTGTCATTTA 499
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGATGGTTGATGGAAATGGAATACTTCATCCACGAGGATTTGGCTTGGCGTGTCATTTA 480
Query 500 GGTGTTCTTGCTCACCTACCAACCATTGGGGTCGGAAAGAATCTGCATCATGTGGATGGT 559
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GGTGTTCTTGCTCACCTCCCTACCATTGGGGTCGGGAAGAATCTGCATCATGTGGATGGT 540
Query 560 CTGAATCAATCTGAGGTTAAACAGTCGCTTCAGCTCCAAATAAA-CGAGCATGAGCAAAC 618
||||||||||||||||||| || ||||||||||||| ||| ||| |||||||||||||
Sbjct 541 CTGAATCAATCTGAGGTTAGACGGTCGCTTCAGCTC-AAAGAAAACGAGCATGAGCAAGT 599
Query 619 TATCACTTTGGTAGGAAACTCTGGAATTA-CATGGGGAGTAGGATTTAGGCCAACTCTGA 677
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 600 TATCACTTTGGTAGGAAACTCTGGA-TTAACATGGGGAGTAGGATTTAGGCCAACTCTGA 658
Query 678 GTTCTCTAAAGCCCATATATGTATCGGTTGGCCATCGCATATCACTGGACTCTGCCGTTG 737
||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 659 GTTCTCTGAAGCCCATATATGTTTCAGTTGGCCATCGCATATCACTTGACTCTGCCGTTA 718
Query 738 AAGTTGTCAAGATAACCTGCAAGTACCGTGTTCCAGAACCTATTAGACAGGCAGATATTA 797
|| |||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 719 AAATTGTCAAGATGACCTGCAAGTACCGTGTTCCGGAACCTATTAGACAGGTAGATATGA 778
Query 798 GATCAAGAGCATATCTCCAGAAGCATCAAACTGAGTCTTTTAAA-GAACTGGCAGTGCGA 856
|||||||||||||||||||| |||||||| || ||||||||||| ||||||| | || ||
Sbjct 779 GATCAAGAGCATATCTCCAGGAGCATCAAGCTAAGTCTTTTAAAAGAACTGGGACTGTGA 838
Query 857 CCACCGGATCAGACTGAACCTTAATCCCTCAAGCAACCAAGAACACTATTCCACATTACA 916
| |||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 839 CAACCG-ACCAGACTGAACCTTAATCTCTCAAACAACCAAGAACACTATTCCACATTACA 897
Query 917 TAGAAACTCTCCAAAGTCTTTACCAAAGATTGTTAAATGGACAGATTCAGG-CACTGAAG 975
||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 898 TAGAA-CTCTCCAAAGTCTTTAC-A--GATTGTTAAATGGACAGATTCAGGGCACTGAAG 953
Query 976 ATCCGCCCCAATTATCTCCTTCATTTATCTCACTGACTTGAAGATTGCAAGCTAACCAAG 1035
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATCCGCCCCAATTTTCTCCTTCATTTATCTCACTGACTTGAAGATTGCAAGCTAACCAAG 1013
Query 1036 GTAATCATGTTATATCCGATACATTGGAATTTCCTTTCCATACATACCTTAAACA-AGTG 1094
|||||||||| ||| | ||||||||||||||||||||||||| | | ||||| ||||
Sbjct 1014 ATAATCATGTTGTATTCTATACATTGGAATTTCCTTTCCATAC-TG--T-AAACATAGTG 1069
Query 1095 TAAATAGAAAGGCTAGGCAACTGGTAATTTGGTTGTTTGGGCACTGTATATTGGGAGATT 1154
|||||||||||| |||| ||||||||||||||||||||||| ||||| | || | |||
Sbjct 1070 TAAATAGAAAGGGTAGGGAACTGGTAATTTGGTTGTTTGGGGACTGTTTGTT---ATATT 1126
Query 1155 TTGGGGTTCTCGACAAACAATTCTATAGCTTTGGGTTTGGTATTTCTTTTGGTTCAGC-T 1213
||| || || | || | || |||||||||| |||||||||||| |
Sbjct 1127 --GGGA-----GAG------TT-TG-AGGT--GG-TTTGGTATTTTTTTTGGTTCAGCGT 1168
Query 1214 --GTAACTCGTTTCTCATGCTCTAAGACAGCACAATCGTTTCTCAATCTTAA---GAGAC 1268
||| |||||||||||| | ||||| |||| ||||||||||||||||||| |||||
Sbjct 1169 CTGTA-CTCGTTTCTCATTCAATAAGAAAGCAGAATCGTTTCTCAATCTTAATAAGAGAC 1227
Query 1269 TGTTAATGGTGGAC 1282
||||||||||||||
Sbjct 1228 TGTTAATGGTGGAC 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5