BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31180.1
Length=2126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491623 jgi|Araly1|491623|fgenesh2_kg.7__1056__AT4G31180.1 2634 0.0
Ahg898329 jgi|Araly1|898329|Al_scaffold_0005_2295 1639 0.0
Ahg490730 jgi|Araly1|490730|fgenesh2_kg.7__163__AT4G26870.1 1134 0.0
Ahg921463 jgi|Araly1|921463|scaffold_102744.1 337 2e-91
Ahg892257 jgi|Araly1|892257|Al_scaffold_0006_253 337 2e-91
Ahg922616 jgi|Araly1|922616|scaffold_103897.1 244 2e-63
Ahg491627 jgi|Araly1|491627|fgenesh2_kg.7__1060__AT4G31160.1 217 3e-55
Ahg914068 jgi|Araly1|914068|Al_scaffold_0001_4322 200 3e-50
Ahg902234 jgi|Araly1|902234|Al_scaffold_0004_2884 200 3e-50
Ahg344517 jgi|Araly1|344517|fgenesh1_pg.C_scaffold_4000859 196 4e-49
> Ahg491623 jgi|Araly1|491623|fgenesh2_kg.7__1056__AT4G31180.1
Length=1761
Score = 2634 bits (1426), Expect = 0.0
Identities = 1661/1773 (94%), Gaps = 21/1773 (1%)
Strand=Plus/Plus
Query 218 TCATCATGTCGTCGGAATCTGAAATCCCGCCGTTGTCGTCATCAACCGCCGCAG-CGGAG 276
|||||||||||||||| |||||||||||||| ||||||||||||| |||| | |||||
Sbjct 1 TCATCATGTCGTCGGAGTCTGAAATCCCGCC---GTCGTCATCAACCACCGC-GCCGGAG 56
Query 277 GAATCTGGAGAGAAGACCAGCAAGAAAGCGGCTAAGAAGGAAGCTGCCAAGCTAGAGAAG 336
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 57 GAATCTGGAGAGAAGATCAGCAAGAAAGCGGCTAAGAAGGAAGCTGCGAAGCTAGAGAAG 116
Query 337 TTAAGACGTCGTCAAGAACAAGAGGAAGCAACGCGTCGA-ACAGCTTCGATCTCTCTGGA 395
||| | ||||| || |||||||| |||||||||||| | ||||||||||| ||||| ||
Sbjct 117 TTACGTCGTCGGCAGGAACAAGATGAAGCAACGCGT-AAGACAGCTTCGATGTCTCTCGA 175
Query 396 AGAGAATGACGAGTTTTCCAATAACTACGGCGACGTGACTCTTACCGAGTTGCAATCGTC 455
||| || || |||||||||| ||||||||||||||||||||| | ||||||||||||| |
Sbjct 176 AGAAAACGAAGAGTTTTCCAGTAACTACGGCGACGTGACTCTCAACGAGTTGCAATCGAC 235
Query 456 GGCGGATCCGAAAGCCGGGAAGTGGATAGAGGCTGTTGAGGGAAAGGAGTGGACCGATGT 515
|||||||||||||||||| || |||| |||||||||||||||||| || |||||||||||
Sbjct 236 GGCGGATCCGAAAGCCGGAAAATGGAGAGAGGCTGTTGAGGGAAAAGATTGGACCGATGT 295
Query 516 GAGCGATTTGGTGGAAGAGATGTTGGAATCAGAGGTTCTGATCAGAGGCCGAGTGCACAC 575
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 296 GAGCGATTTGATGGAAGAGATGGTGGAATCAGAGGTTCTGATCAGAGGCCGAGTGCACAT 355
Query 576 GAATCGTCCAACGTCTAACAAATTGGGGTTTGTGGTCTTGAGGGAGAGCGGATCAACTGT 635
|||||||||||||||| ||||||||||||| || |||||||||| || |||||||||||
Sbjct 356 TAATCGTCCAACGTCTAGCAAATTGGGGTTTTTGATCTTGAGGGAAAGTGGATCAACTGT 415
Query 636 TCAGTGCGTGGTTAGCCAATCAGAGAAGACCAAAGTAGGTGCCAACATGGTTAAATACCT 695
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 416 TCAGTGCGTGGTTCGCCAATCGGAGAAGACCAAAGTGGGTGCCAACATGGTTAAATA-CT 474
Query 696 -CAAGCAGCTGAGTCGCGAATCCTTTGTCGATGTTATCGGTGTCGTCACTCTCCCCAAGG 754
| ||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 475 CCGAGCAGCTGAGTCGCGAATCTTTTGTCGATGTTATCGGTGTCGTCGTTCTTCCCAAGG 534
Query 755 AGCCGCTGACGGGAACTACGCAGCAGGTTGAAATTCAAGTGAGAAAAGTGTACTGCATCA 814
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 535 AGCCTCTGACGGGAACTACGCAGCAGGTTGAGATTCAAGTGAGAAAAGTGTACTGCATCA 594
Query 815 ACAAATCCTTGGCCAAATTACCACTTAGTGTGGAGGATGCTGCTCGGAGTGAAGCAGATA 874
||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 595 ACAAAGCCTTGGCAAAATTACCACTTAGTGTCGAGGATGCTGCTCGGAGTGAAGCAGATA 654
Query 875 TCGAAGCATCTCTTCAGACTCCATCTCCAGCTGCTCGTGTCAATCAGGATACACGTTTGA 934
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 655 TCGAAAAATCTCTTCAGACTGAAAAGCCAGCTGCTCGTGTCAATCAGGATACACGTTTGA 714
Query 935 ACT-ATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAGCCATCTTCCAG-CTTCAGTA 992
| | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 715 A-TCATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAGCCATCTTCC-GACTTCAGTG 772
Query 993 CGAAGTCGAATATGCCTTCAGAGAAAAATTACGAT-TT-AAGAATTTTGTTGGAATCCAC 1050
| |||| ||| || | |||||||||||||| ||| || ||| |||||||||||||||||
Sbjct 773 CCAAGTTGAAAATTCTTTCAGAGAAAAATT--GATATTCAAGGATTTTGTTGGAATCCAC 830
Query 1051 ACACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATAC 1110
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 831 ACACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGATTGGAATAC 890
Query 1111 AAAGGGCAACCTGCTTGTCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGT 1170
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 891 AAAGGGCAACCTGCTTGTCTAGCCCAGTCTCCTCAGCTTCACAAGCAAATGGCAATATGT 950
Query 1171 GGTGACTTGCGACGTGTCTTTGAGGTAGGTCCTGTTTTCAGGGCCGAAGACTCCTTCACT 1230
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 951 GGTGACTTGCGACGCGTCTTTGAGGTAGGTCCTGTTTTCAGGGCAGAAGACTCGTTCACT 1010
Query 1231 CATAGACACCTGTGTGAATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAACACTAT 1290
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CATAGACACTTGTGTGAATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAACACTAT 1070
Query 1291 TCTGAGATAATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAG 1350
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1071 TCTGAGATAATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGCTTGAACGAA 1130
Query 1351 AGGTGCAAAAAAGAACTGCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTT 1410
| ||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1131 AAGTGCAAAAAGGAATTGGAAGCTGTTAGAAAGCAATACCCATTTGAACCTTTGAAGTTT 1190
Query 1411 CTACCAAAAACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGT 1470
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CTACCAAAAACATTGAGGCTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGT 1250
Query 1471 GTGGAGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTT 1530
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1251 GTGGAGGTTGATCCTCTTGGCGATCTGAACACTGAATCTGAGAGAAAACTCGGCCAGCTT 1310
Query 1531 GTATTGGAAAAGTACAACACTGAGTTCTATATTCTGCATCGGTATCCTAAGGCAGTTAGG 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GTATTGGAAAAGTACAACACTGAGTTCTATATTCTGCATCGGTATCCTAAGGCAGTTAGG 1370
Query 1591 CCTTTCTACACAATGACTTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTC 1650
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1371 CCTTTCTACACAATGACTTGTGCTGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTC 1430
Query 1651 ATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGGAG 1710
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1431 ATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAATCTTGGAG 1490
Query 1711 CAACGTGCAGGAGAATGT-GGCATTGATGTCAAGACAATATCCACATACATTGATTCATT 1769
||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1491 CAACGTGCAGGGGAAT-TCGGCATTGATGTCAAGACAATTTCCACATACATTGATTCATT 1549
Query 1770 CAGGTACGGTGCGCCTCTACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCT 1829
|||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 CAGGTATGGTGCACCTCCACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCT 1609
Query 1830 TTTCTGTGCACTGAACAACATTCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCT 1889
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TTTCTGTGGACTGAACAACATCCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCT 1669
Query 1890 TTCACCCTAATATCTTTTCAACTGAAAGCTATTTAGTGAATAATTGTCCA-ACTCCACAA 1948
| ||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||
Sbjct 1670 TGCACCCTAATATCTTTTCAACTGAAAGCTAATGAGTGAATAATTGTC-AGACTCCACAA 1728
Query 1949 ATTTTTCTCATGAAGCTTTTAGAGATTTTTACT 1981
|||||||||||||||||||||||||||||||||
Sbjct 1729 ATTTTTCTCATGAAGCTTTTAGAGATTTTTACT 1761
> Ahg898329 jgi|Araly1|898329|Al_scaffold_0005_2295
Length=1653
Score = 1639 bits (887), Expect = 0.0
Identities = 1372/1595 (86%), Gaps = 77/1595 (5%)
Strand=Plus/Plus
Query 330 AGAGAAGTTAAGAC-GTCGTCAAGAACAAGAGGAAGCAACGCGTCGA-ACAGCTTCGATC 387
|||||||||| | | | || || |||||||||||||| || ||| | |||||||| |
Sbjct 111 AGAGAAGTTACG-CAGCCGGCAGGAACAAGAGGAAGCCACTCGT-AAGACAGCTTCAAAG 168
Query 388 TCTCTGGAAG-AGAATGACGAGTTTTCCAA-TAACTACGGCGACGTGACTCTTACCGAGT 445
||||| |||| || |||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 169 TCTCTCGAAGAAG-ATGACGAGTTTT-CAAGTAACTACGGCGACGTGACTCTTAACGAGT 226
Query 446 TGCAATCGTCGGCGGATCCGAAAGCCGGGAA-GTGGATAGAGGCTGTTG-AGGGAAAGGA 503
|||||||| ||| ||||||||||||| |||| |||| ||||||||||| |||| ||| |
Sbjct 227 TGCAATCGACGGAGGATCCGAAAGCC-GGAATATGGAGAGAGGCTGTTGAAGGG-AAGAA 284
Query 504 GTGGACCGATGTGAGCGATTTGGTGGAAGAGAT-GTTGGAATCAGAGGTTCTGATCAGAG 562
|||||| || ||||| | ||||||||||| || | || ||| |||||| |||| ||||
Sbjct 285 GTGGACTGAAGTGAGTAAATTGGTGGAAGAAATAG-CGGGATCTGAGGTTTTGATAAGAG 343
Query 563 GCCGAGTGCACACGAAT--CGTCCAACGTCTAACAAATTGGGGTTTGTGGTCTTGAGGGA 620
||||||| |||||| || ||| |||| ||| | | | | ||||||| |||||||| |
Sbjct 344 GCCGAGTTCACACGTATCGCGTACAAC--CTAGC--A-TAGTGTTTGTGATCTTGAGGAA 398
Query 621 GAGCGGATCAACTGTTCAGTGCGTGG-TTAGCCAATCAGAGAAGACCAAAG-TAGGTGCC 678
|| ||||| |||||||||||||||| || ||||| ||| ||||||| | || | | |
Sbjct 399 AAGTGGATCCACTGTTCAGTGCGTGGCCAAG-CAATCGGAGGAGACCAACGTTA-GCGTC 456
Query 679 AACATGGTTAAATACCTCAAGCAGCTGAGTCGCGAATCCTTTGTCGATGTTATCGGTGTC 738
|||||| ||||||||||| || |||||||| |||||||| |||||||||| |||||||||
Sbjct 457 AACATGATTAAATACCTCGAGAAGCTGAGTTGCGAATCCATTGTCGATGTCATCGGTGTC 516
Query 739 GTCACTCTCCCCAAGGAGCCGCTG--ACGGGAACTACGCAGCAGGTTGAAATTCAAGTGA 796
||| ||||||||| || || ||| | ||||||||||||||||||||||||||| ||||
Sbjct 517 GTCGTTCTCCCCAAAGA-CC-CTGTAAAGGGAACTACGCAGCAGGTTGAAATTCAGGTGA 574
Query 797 GAAAAG-TGTACTGCATCAACAAATCCTTGGCCAA-ATTACCACTTAGTGTGGAGGATGC 854
| |||| |||||||| |||||||| |||| | ||| ||||||| ||| |||||||| |||
Sbjct 575 G-AAAGCTGTACTGCGTCAACAAAGCCTT-GACAAGATTACCATTTAATGTGGAGGCTGC 632
Query 855 TGCTCGGAGTGAAGCAGATATCGAAGCATCTCTTCAGACTCCATCTCCAGCTGCTCGTGT 914
||| || |||| | | | | | | | ||| | | || | || |||||
Sbjct 633 TGCCCGAAGTG-A--A-A-CT-G--G-A-------AGA--CGAGCT---G-TG--CGTGT 668
Query 915 CAATCAGGATACACGTTTGAACT-ATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAG 973
||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||
Sbjct 669 CAATCAGGATACACGTTTGAA-TCATAGGGTGATTGACCTCAGAACACCGGCTAATCAAG 727
Query 974 CCATCTTC-CAGCTTCAGTACGAAGTCG-AATATGCCTTCAGAGAAAAATTACGATTTAA 1031
||||| || | ||| ||| | || ||| || || ||||| ||||| || | || ||
Sbjct 728 CCATCGTCGC-CCTTAAGTCCCAACTCGTAA-ATTTTTTCAGTGAAAATTTGCTATCCAA 785
Query 1032 GAATTTTGTTGGA-ATCCACACACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTG 1090
| |||| ||| | ||| |||||| ||||| |||| ||||||||||||||||||||||
Sbjct 786 GGATTTCGTT-AATATCTTCACACCGAAACTCCTGGCCGGTAGTAGTGAAGGAGGTTCTG 844
Query 1091 CTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTGTCTAGCTCAGTCTCCTCAGCTCC 1150
|||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| |
Sbjct 845 CTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTGTCTAGCTCAGTCTCCTCAGCTTC 904
Query 1151 ACAAGCAAATGGCAATATGTGGTGACTTGCGACGTGTCTTTGAGGTAGGTCCTGTTTTCA 1210
|||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct 905 ACAAGCAAATGGCAATATGTGGTGACTTACGACGCGTCTTTGAGATAGGTCCTGTTTTCA 964
Query 1211 GGGCCGAAGACTCCTTCACTCATAGACACCTGTGTGAATTCGTTGGTCTTGATGTGGAGA 1270
| || ||| | || ||| |||||||||| ||||||||||| || ||||||||||||||||
Sbjct 965 GAGCAGAAAAGTCGTTCTCTCATAGACATCTGTGTGAATTTGTGGGTCTTGATGTGGAGA 1024
Query 1271 TGGAGATTCG-GAAACACTATTCTGAGATAATGGATCTTGTGGACGAGTTATTTGTGTTT 1329
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1025 TGGAGATT-GATAAACACTATTCTGAGATAATGGACCTTGTGGACGAGTTATTTGTGGCT 1083
Query 1330 ATATTCACTAGTTTGAATGAG-AGGTGCAAAAAAGAAC-TGCAAGCTGTTGGAAAGCAAT 1387
|||||||||||||||||| || | ||||||||| |||| || ||||| ||||||||||||
Sbjct 1084 ATATTCACTAGTTTGAAT-AGCAAGTGCAAAAAGGAACTTG-AAGCTATTGGAAAGCAAT 1141
Query 1388 ACCCATTTGAACCTTTGAAGTTTCTACCAAAA-ACATTGAGGTTAACGTTTGAAGAAGGG 1446
||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1142 ACCCATTTGAACCTTTGAAGTTTCT-TGAAAAGACATTGAGGTTAACCTTTGAAGAAGGG 1200
Query 1447 GTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTCTTGGCGATCTAAACACTGAA 1506
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1201 GTTCAAATGCTTAAGGAAGCTGGTGTGGAGATTGATCCTCTAGGCGATCTAAACACTGAA 1260
Query 1507 TCTGAGAGAAAACTAGGCCAGCTTGTATTGGAAAAGTACAACACTGAGTTCTATATTCTG 1566
|||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1261 TCTGAGAGAAAACTTGGCCAACTTGTACTGGAAAAGTACAACACTGAGTTCTATATTCTG 1320
Query 1567 CATCGGTATCCTAAGGCAGTTAGGCCTTTCTACACAATGACTTGTGCCGATAATCCTCTT 1626
||| ||| ||||| ||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1321 CATAGGTTTCCTACGGCCGTTAGGCCTTTCTACACTATGACTTGTGTTGATAATCCTCTT 1380
Query 1627 TACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGT 1686
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TACAGCAACTCCTTTGATGTCTTCATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGT 1440
Query 1687 GTCCATATCCCAGAAGTCTTGGAGCAACGTGC-AGG-AGAATGTGGCATTGATGTCAAGA 1744
||||||||||||||| | |||||||||||||| ||| || | | || |||||||||||||
Sbjct 1441 GTCCATATCCCAGAATTATTGGAGCAACGTGCGAGGGAGCACG-GG-ATTGATGTCAAGA 1498
Query 1745 CAATATCCACATACATTGATTCATTCAGGTACGGTGCGCCTCTACACGGTGGATTTGGAG 1804
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1499 CAATATCCACATACATCGATTCATTCAGGTATGGTGCGCCTCCACACGGTGGATTTGGAG 1558
Query 1805 TGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGCACTGAACAACATTCGGAAAACATCCC 1864
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 1559 CGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGGACTGAACAACATCCGGAAAACATCGC 1618
Query 1865 TCTTCCCTCGTGACCCTCAAAGGCTTTCACCCTAA 1899
|||||||||| ||||||||||||||| ||||||||
Sbjct 1619 TCTTCCCTCGCGACCCTCAAAGGCTTGCACCCTAA 1653
> Ahg490730 jgi|Araly1|490730|fgenesh2_kg.7__163__AT4G26870.1
Length=1691
Score = 1134 bits (614), Expect = 0.0
Identities = 1182/1445 (82%), Gaps = 84/1445 (6%)
Strand=Plus/Plus
Query 486 GGCTGTTGAGGGAAAGGAG-TGGACCGATGTGAGCGATTTGGTGGAAGAGA-TGTTGGAA 543
||||||||||||||| ||| | ||| ||||||||| | ||||| ||||||| || |||
Sbjct 162 GGCTGTTGAGGGAAAAGAGCT-GACTGATGTGAGCAACTTGGTTGAAGAGATTG-TGGGG 219
Query 544 TCAGAGG-TTCTGATCAGAGGCCGAGTGCACACGAATCGTCCAACGTC--TAACAAATTG 600
||||||| ||| ||||||||| |||||||||| |||||| | | ||| || ||||||
Sbjct 220 TCAGAGGTTTC-GATCAGAGGTCGAGTGCACAAGAATCG-CTTA-GTCGGTACCAAATT- 275
Query 601 GGGTTTGTGGTCTTGAGGGAGAGCGGA-TCAACTGTTCAGTGCGTGGTTAGCCAATCAGA 659
||||||| |||||||||| || ||| || || ||||| ||||||| | | ||
Sbjct 276 --GTTTGTGATCTTGAGGGAAAGTGGATTC-ACGGTTCAATGCGTGG-T-G-------GA 323
Query 660 GAAGACCAAAGTAGGTGCCAACATGGTTAAATACCTCAAGCAGCTGAGTCGCGAATCCT- 718
| |||||| ||| ||||| |||||| |||||| |||||||||||||||| |||| ||
Sbjct 324 GGAGACCAGAGTTGGTGCAAACATGATTAAATTTGTCAAGCAGCTGAGTCGTGAAT-CTG 382
Query 719 TTGTCGATG-TTATCGGTGTCGTCACTCTCCCCAAGGAGCCGCTGACGGGAACTACGCAG 777
|||| || | |||||||||||||| ||| ||| ||| |||| || || ||||| || |
Sbjct 383 TTGTTGA-GCTTATCGGTGTCGTCTCTCACCCTAAGAAGCCTCTCACAGGAACCAC-C-- 438
Query 778 CAGGTTGAAATTCAAGTGAGAAAAGTGTACTGCATCAACAAATCCTTGGCCAAA-TTACC 836
|| | | | || |||| |||||||| || || |||||| || ||| |||||
Sbjct 439 CA----G-----C-A--GA-AAAA-TGTACTGCCTC-GCAGATCCTT-GCTAAATTTACC 482
Query 837 ACTTAG-TGTGGAGGATGCTGCTCGGAGTGAAGCAGATATCGAAGCATCTCTTC-A-GAC 893
|||| | |||||||||||||||||| |||||| ||||||| ||| |||| | | ||
Sbjct 483 ACTT-GTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCT-GGCAAGGA- 539
Query 894 T-CCATCTCCAGCTGCTCGTGTCAATCAGGATACACGTTTGAACT-ATAGGGTGCTCGAC 951
| || ||||||||||||||| |||||| ||||||||||| | ||||||| || |||
Sbjct 540 TGGCA-AACCAGCTGCTCGTGTCCTTCAGGACACACGTTTGAA-TAATAGGGTTCTTGAC 597
Query 952 CTCAGAACACCGGCTAATCAAGCCATCTTCCAG-CTTCAGTACGAAGT-CGAATATGCCT 1009
|||||||||||||||||||||||||||||| | |||||| | |||| | ||| || |
Sbjct 598 ATCAGAACACCGGCTAATCAAGCCATCTTCC-GTATTCAGTGCCAAGTCCAAAT-TG-AT 654
Query 1010 -TCAGAGAAAAATTACGAT-TTAAGAATTTTGTTGGAATCCACACACCAAAACTGATGGC 1067
| | || | | || ||| | || ||| |||||||||||| ||| |||||||
Sbjct 655 ATTA-TGATTTGTCATTATCCTAATAGGGTTCTTGAAATCCACACACCGAAATTGATGGC 713
Query 1068 TGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTG 1127
||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 714 TGGCAGTAGTGAAGGAGGTTCCGCTGTATTTAGGTTGGACTACAAAGGGCAGCCTGCTTG 773
Query 1128 TCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGTGGTGACTTGCGACGTGT 1187
||| ||||||||||||||||| || ||||| ||||| |||||||||||| ||||||| ||
Sbjct 774 TCTGGCTCAGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGT 833
Query 1188 CTTTGAGGTAGGTCCTGTTTTCAGGGCCGAAGACTCCTTCACTCATAGACACCTGTGTGA 1247
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 834 CTTTGAGGTTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGA 893
Query 1248 ATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAA-CACTATTCTGAGATAATGGATC 1306
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 894 ATTCGTTGGTCTTGATGTGGAGATGGAGATTCG-AATGCACTACTCTGAGATAATGGATC 952
Query 1307 TTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTT-GAATGAGAGGTGCAAAAAAGAA 1365
|||||| ||||| ||| ||| |||||||| | | ||| || |||||| ||| |||
Sbjct 953 TTGTGGGGGAGTTGTTTCCGTTCATATTCACAAAAATAGAA-GAAAGGTGCCCAAAGGAA 1011
Query 1366 CT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAAAACATT 1424
|| | || |||| ||||||||||||| ||| || ||||||||||||| || |||||||
Sbjct 1012 CTTG-AATCTGTCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATT 1070
Query 1425 GAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCC 1484
|||| |||| |||| ||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1071 GAGGCTAACCTTTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCC 1130
Query 1485 TCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT-TGGAAAAGT 1543
|||||| |||||||| || ||||||||||| ||||| ||||||||||| | |||||||||
Sbjct 1131 TCTTGGTGATCTAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGT-TCTGGAAAAGT 1189
Query 1544 ACAACACTGAGTTCTATATTCTGCATCGGTATCC-TAAGGCAGTTAGGCCTTTCTACACA 1602
|||| || |||||||| || |||||||| ||||| | ||| || || || ||||||||
Sbjct 1190 ACAAGACGGAGTTCTACATGCTGCATCGCTATCCATC-GGCTGTCAGACCGTTCTACACT 1248
Query 1603 ATGACTTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAG 1662
||| | | || || || || ||||||||||| || ||||||||||||||||| |||
Sbjct 1249 ATGCCCTATGAAAATGATTCTAACTACAGCAACTCGTTCGATGTCTTCATCAGAGGAGAG 1308
Query 1663 GAGATCATATCAGGAGCTCAACGTGTCCAT-ATCCCAGAAGTCTTGGAGCAA-CGTGCAG 1720
|||||||| ||||||||||||||| ||||| | ||||||| |||||||| || || |||
Sbjct 1309 GAGATCATGTCAGGAGCTCAACGTATCCATGA-CCCAGAACTCTTGGAG-AAGCGCGCAA 1366
Query 1721 GAGAATG-TGGCATTGATGTCAAGACAATATCCACATACATTGATTCATTCAGGTACGGT 1779
||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1367 GAGAATGCTG-CATTGATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGT 1425
Query 1780 GCGCCTC-TACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGC 1838
|| || | | ||||||||||| ||||||||||||||||| ||||| ||||| || |||||
Sbjct 1426 GCACCACCT-CACGGTGGATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGC 1484
Query 1839 ACTGAACAACATTCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCTTTCACCCTA 1898
|| || ||||| || ||||| || || |||||||||||| |||||||||| | |||||
Sbjct 1485 CCTCAATAACATCCGCAAAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTA 1544
Query 1899 ATATC 1903
|||||
Sbjct 1545 ATATC 1549
> Ahg921463 jgi|Araly1|921463|scaffold_102744.1
Length=610
Score = 337 bits (182), Expect = 2e-91
Identities = 228/250 (91%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 1297 ATAATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAGAGGTGC 1356
|||||||| |||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 342 ATAATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATAACAAATGC 401
Query 1357 AAAAAAGAACT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACC 1415
||||| ||||| | ||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct 402 AAAAAGGAACTTG-AAGCTATTGGAAAACAATACCCATTTAAACCTTTGAAGTTTCTTG- 459
Query 1416 AAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGG 1474
|||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 460 AAAAGACATTGAGGTTAACGTTTGAAGAAGGGATTCAAATTCTTAAGGAAGCTGGTGTGG 519
Query 1475 AGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT 1534
|| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 520 AGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTAC 579
Query 1535 TGGAAAAGTA 1544
||||||||||
Sbjct 580 TGGAAAAGTA 589
> Ahg892257 jgi|Araly1|892257|Al_scaffold_0006_253
Length=246
Score = 337 bits (182), Expect = 2e-91
Identities = 226/247 (91%), Gaps = 4/247 (2%)
Strand=Plus/Plus
Query 1300 ATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAGAGGTGCAAA 1359
||||| |||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 1 ATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATAACAAATGCAAA 60
Query 1360 AAAGAACT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAA 1418
|| ||||| | ||||| ||||||| |||||||||||| |||||||||||||||| |||
Sbjct 61 AAGGAACTTG-AAGCTATTGGAAAACAATACCCATTTAAACCTTTGAAGTTTCTTG-AAA 118
Query 1419 A-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGG 1477
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 AGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGGAGA 178
Query 1478 TTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTATTGG 1537
|||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |||
Sbjct 179 TTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTACTGG 238
Query 1538 AAAAGTA 1544
|||||||
Sbjct 239 AAAAGTA 245
> Ahg922616 jgi|Araly1|922616|scaffold_103897.1
Length=541
Score = 244 bits (132), Expect = 2e-63
Identities = 158/170 (93%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 1376 TTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAAA-ACATTGAGGTTAACG 1434
||||||| |||||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct 353 TTGGAAA-CAATACCCATTTAAACCTTTGAAGTTTCT-TGAAAAGACATTGAGGTTAACG 410
Query 1435 TTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTCTTGGCGAT 1494
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 411 TTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGGAGATTGATCCTCTTGGCGAT 470
Query 1495 CTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTATTGGAAAAGTA 1544
||||||||||||||| |||||||||| ||||| |||||| ||||||||||
Sbjct 471 CTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTACTGGAAAAGTA 520
Score = 196 bits (106), Expect = 4e-49
Identities = 148/168 (88%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 1005 TGCCTTCAGAGAAAAATTACGATTTAAGAATTTTGTTGGA-ATCCACACACCAAAACTGA 1063
||| ||| ||||||| || | || ||| |||||||| | ||||||||||| |||||
Sbjct 177 TGCGTTC-GAGAAAATTTGCTATCCAAGGATTTTGTT-AATATCCACACACCGAAACTCT 234
Query 1064 TGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTG 1123
|||| |||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 235 TGGCCGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACCAAGGACAGCCTG 294
Query 1124 CTTGTCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGTG 1171
||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 295 CTTGTCTAGCTCAGTCTCCTCAGCTTCACAAGCAAATGACAATATGTG 342
> Ahg491627 jgi|Araly1|491627|fgenesh2_kg.7__1060__AT4G31160.1
Length=5805
Score = 217 bits (117), Expect = 3e-55
Identities = 145/158 (92%), Gaps = 3/158 (2%)
Strand=Plus/Minus
Query 23 TTCATGGCCGTCGCTGCTAAGGTCATCATCCCCACTATCGCTATTGTCTCCAGCTAGTCC 82
||||| | |||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 5498 TTCATTGTCGTCGCTGCTAAGGTCATCATCCCCACTATCGCTATCGTCTACACCTAGTCC 5439
Query 83 CAGAATTCGATCCAGGtcatcttcgtcttcatcatcttcatcttcatcttcatcttccgt 142
||||||||| |||||||||||||| | || || || ||||||||||||||||| |||||
Sbjct 5438 CAGAATTCGGTCCAGGTCATCTTC--C-TCGTCTTCATCATCTTCATCTTCATCGTCCGT 5382
Query 143 ctcatcatcatcatcgggatccgagtcatcatctGTTG 180
||||||||||||||||||||||||||||||||||||||
Sbjct 5381 CTCATCATCATCATCGGGATCCGAGTCATCATCTGTTG 5344
> Ahg914068 jgi|Araly1|914068|Al_scaffold_0001_4322
Length=321
Score = 200 bits (108), Expect = 3e-50
Identities = 123/130 (95%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 1416 AAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGG 1474
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 191 AAAAGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGG 250
Query 1475 AGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT 1534
|| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 251 AGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTAC 310
Query 1535 TGGAAAAGTA 1544
||||||||||
Sbjct 311 TGGAAAAGTA 320
Score = 196 bits (106), Expect = 4e-49
Identities = 143/161 (89%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 1009 TTCAGAGAAAAATTACGATTTAAGAATTTTGTTGGA-ATCCACACACCAAAACTGATGGC 1067
||||||||||| || | || ||| |||||||| | ||||||||||| ||||| ||||
Sbjct 4 TTCAGAGAAAATTTGCTATCCAAGGATTTTGTT-AATATCCACACACCGAAACTCTTGGC 62
Query 1068 TGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTG 1127
|||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 63 CGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTG 122
Query 1128 TCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATAT 1168
||||||||||||||||||||| |||||||||||| ||||||
Sbjct 123 TCTAGCTCAGTCTCCTCAGCTTCACAAGCAAATGACAATAT 163
> Ahg902234 jgi|Araly1|902234|Al_scaffold_0004_2884
Length=321
Score = 200 bits (108), Expect = 3e-50
Identities = 123/130 (95%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 1416 AAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGG 1474
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 191 AAAAGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGG 250
Query 1475 AGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT 1534
|| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 251 AGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTAC 310
Query 1535 TGGAAAAGTA 1544
||||||||||
Sbjct 311 TGGAAAAGTA 320
Score = 191 bits (103), Expect = 2e-47
Identities = 142/161 (88%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 1009 TTCAGAGAAAAATTACGATTTAAGAATTTTGTTGGA-ATCCACACACCAAAACTGATGGC 1067
||||||||||| || | || ||| |||||||| | ||||||||||| ||||| ||||
Sbjct 4 TTCAGAGAAAATTTGCTATCCAAGGATTTTGTT-AATATCCACACACCGAAACTCTTGGC 62
Query 1068 TGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTG 1127
|||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 63 CGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTG 122
Query 1128 TCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATAT 1168
|||||||||||||||||| || |||||||||||| ||||||
Sbjct 123 TCTAGCTCAGTCTCCTCAACTTCACAAGCAAATGACAATAT 163
> Ahg344517 jgi|Araly1|344517|fgenesh1_pg.C_scaffold_4000859
Length=372
Score = 196 bits (106), Expect = 4e-49
Identities = 129/140 (92%), Gaps = 2/140 (1%)
Strand=Plus/Plus
Query 1406 AGTTTCTACCAAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAA 1464
||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 233 AGTTTCT-TGAAAAGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAA 291
Query 1465 GCTGGTGTGGAGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGC 1524
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 292 GCTGGTGTGGAGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGAC 351
Query 1525 CAGCTTGTATTGGAAAAGTA 1544
|| |||||| ||||||||||
Sbjct 352 CAACTTGTACTGGAAAAGTA 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79989514500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5