BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31180.1 Length=2126 Score E Sequences producing significant alignments: (Bits) Value Ahg491623 jgi|Araly1|491623|fgenesh2_kg.7__1056__AT4G31180.1 2634 0.0 Ahg898329 jgi|Araly1|898329|Al_scaffold_0005_2295 1639 0.0 Ahg490730 jgi|Araly1|490730|fgenesh2_kg.7__163__AT4G26870.1 1134 0.0 Ahg921463 jgi|Araly1|921463|scaffold_102744.1 337 2e-91 Ahg892257 jgi|Araly1|892257|Al_scaffold_0006_253 337 2e-91 Ahg922616 jgi|Araly1|922616|scaffold_103897.1 244 2e-63 Ahg491627 jgi|Araly1|491627|fgenesh2_kg.7__1060__AT4G31160.1 217 3e-55 Ahg914068 jgi|Araly1|914068|Al_scaffold_0001_4322 200 3e-50 Ahg902234 jgi|Araly1|902234|Al_scaffold_0004_2884 200 3e-50 Ahg344517 jgi|Araly1|344517|fgenesh1_pg.C_scaffold_4000859 196 4e-49 > Ahg491623 jgi|Araly1|491623|fgenesh2_kg.7__1056__AT4G31180.1 Length=1761 Score = 2634 bits (1426), Expect = 0.0 Identities = 1661/1773 (94%), Gaps = 21/1773 (1%) Strand=Plus/Plus Query 218 TCATCATGTCGTCGGAATCTGAAATCCCGCCGTTGTCGTCATCAACCGCCGCAG-CGGAG 276 |||||||||||||||| |||||||||||||| ||||||||||||| |||| | ||||| Sbjct 1 TCATCATGTCGTCGGAGTCTGAAATCCCGCC---GTCGTCATCAACCACCGC-GCCGGAG 56 Query 277 GAATCTGGAGAGAAGACCAGCAAGAAAGCGGCTAAGAAGGAAGCTGCCAAGCTAGAGAAG 336 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 57 GAATCTGGAGAGAAGATCAGCAAGAAAGCGGCTAAGAAGGAAGCTGCGAAGCTAGAGAAG 116 Query 337 TTAAGACGTCGTCAAGAACAAGAGGAAGCAACGCGTCGA-ACAGCTTCGATCTCTCTGGA 395 ||| | ||||| || |||||||| |||||||||||| | ||||||||||| ||||| || Sbjct 117 TTACGTCGTCGGCAGGAACAAGATGAAGCAACGCGT-AAGACAGCTTCGATGTCTCTCGA 175 Query 396 AGAGAATGACGAGTTTTCCAATAACTACGGCGACGTGACTCTTACCGAGTTGCAATCGTC 455 ||| || || |||||||||| ||||||||||||||||||||| | ||||||||||||| | Sbjct 176 AGAAAACGAAGAGTTTTCCAGTAACTACGGCGACGTGACTCTCAACGAGTTGCAATCGAC 235 Query 456 GGCGGATCCGAAAGCCGGGAAGTGGATAGAGGCTGTTGAGGGAAAGGAGTGGACCGATGT 515 |||||||||||||||||| || |||| |||||||||||||||||| || ||||||||||| Sbjct 236 GGCGGATCCGAAAGCCGGAAAATGGAGAGAGGCTGTTGAGGGAAAAGATTGGACCGATGT 295 Query 516 GAGCGATTTGGTGGAAGAGATGTTGGAATCAGAGGTTCTGATCAGAGGCCGAGTGCACAC 575 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 296 GAGCGATTTGATGGAAGAGATGGTGGAATCAGAGGTTCTGATCAGAGGCCGAGTGCACAT 355 Query 576 GAATCGTCCAACGTCTAACAAATTGGGGTTTGTGGTCTTGAGGGAGAGCGGATCAACTGT 635 |||||||||||||||| ||||||||||||| || |||||||||| || ||||||||||| Sbjct 356 TAATCGTCCAACGTCTAGCAAATTGGGGTTTTTGATCTTGAGGGAAAGTGGATCAACTGT 415 Query 636 TCAGTGCGTGGTTAGCCAATCAGAGAAGACCAAAGTAGGTGCCAACATGGTTAAATACCT 695 ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 416 TCAGTGCGTGGTTCGCCAATCGGAGAAGACCAAAGTGGGTGCCAACATGGTTAAATA-CT 474 Query 696 -CAAGCAGCTGAGTCGCGAATCCTTTGTCGATGTTATCGGTGTCGTCACTCTCCCCAAGG 754 | ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| Sbjct 475 CCGAGCAGCTGAGTCGCGAATCTTTTGTCGATGTTATCGGTGTCGTCGTTCTTCCCAAGG 534 Query 755 AGCCGCTGACGGGAACTACGCAGCAGGTTGAAATTCAAGTGAGAAAAGTGTACTGCATCA 814 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 535 AGCCTCTGACGGGAACTACGCAGCAGGTTGAGATTCAAGTGAGAAAAGTGTACTGCATCA 594 Query 815 ACAAATCCTTGGCCAAATTACCACTTAGTGTGGAGGATGCTGCTCGGAGTGAAGCAGATA 874 ||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 595 ACAAAGCCTTGGCAAAATTACCACTTAGTGTCGAGGATGCTGCTCGGAGTGAAGCAGATA 654 Query 875 TCGAAGCATCTCTTCAGACTCCATCTCCAGCTGCTCGTGTCAATCAGGATACACGTTTGA 934 ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 655 TCGAAAAATCTCTTCAGACTGAAAAGCCAGCTGCTCGTGTCAATCAGGATACACGTTTGA 714 Query 935 ACT-ATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAGCCATCTTCCAG-CTTCAGTA 992 | | ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 715 A-TCATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAGCCATCTTCC-GACTTCAGTG 772 Query 993 CGAAGTCGAATATGCCTTCAGAGAAAAATTACGAT-TT-AAGAATTTTGTTGGAATCCAC 1050 | |||| ||| || | |||||||||||||| ||| || ||| ||||||||||||||||| Sbjct 773 CCAAGTTGAAAATTCTTTCAGAGAAAAATT--GATATTCAAGGATTTTGTTGGAATCCAC 830 Query 1051 ACACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATAC 1110 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 831 ACACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGATTGGAATAC 890 Query 1111 AAAGGGCAACCTGCTTGTCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGT 1170 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 891 AAAGGGCAACCTGCTTGTCTAGCCCAGTCTCCTCAGCTTCACAAGCAAATGGCAATATGT 950 Query 1171 GGTGACTTGCGACGTGTCTTTGAGGTAGGTCCTGTTTTCAGGGCCGAAGACTCCTTCACT 1230 |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 951 GGTGACTTGCGACGCGTCTTTGAGGTAGGTCCTGTTTTCAGGGCAGAAGACTCGTTCACT 1010 Query 1231 CATAGACACCTGTGTGAATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAACACTAT 1290 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1011 CATAGACACTTGTGTGAATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAACACTAT 1070 Query 1291 TCTGAGATAATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAG 1350 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1071 TCTGAGATAATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGCTTGAACGAA 1130 Query 1351 AGGTGCAAAAAAGAACTGCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTT 1410 | ||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||| Sbjct 1131 AAGTGCAAAAAGGAATTGGAAGCTGTTAGAAAGCAATACCCATTTGAACCTTTGAAGTTT 1190 Query 1411 CTACCAAAAACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGT 1470 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 CTACCAAAAACATTGAGGCTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGT 1250 Query 1471 GTGGAGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTT 1530 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1251 GTGGAGGTTGATCCTCTTGGCGATCTGAACACTGAATCTGAGAGAAAACTCGGCCAGCTT 1310 Query 1531 GTATTGGAAAAGTACAACACTGAGTTCTATATTCTGCATCGGTATCCTAAGGCAGTTAGG 1590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1311 GTATTGGAAAAGTACAACACTGAGTTCTATATTCTGCATCGGTATCCTAAGGCAGTTAGG 1370 Query 1591 CCTTTCTACACAATGACTTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTC 1650 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1371 CCTTTCTACACAATGACTTGTGCTGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTC 1430 Query 1651 ATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAGTCTTGGAG 1710 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1431 ATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGTGTCCATATCCCAGAAATCTTGGAG 1490 Query 1711 CAACGTGCAGGAGAATGT-GGCATTGATGTCAAGACAATATCCACATACATTGATTCATT 1769 ||||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||| Sbjct 1491 CAACGTGCAGGGGAAT-TCGGCATTGATGTCAAGACAATTTCCACATACATTGATTCATT 1549 Query 1770 CAGGTACGGTGCGCCTCTACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCT 1829 |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1550 CAGGTATGGTGCACCTCCACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCT 1609 Query 1830 TTTCTGTGCACTGAACAACATTCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCT 1889 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1610 TTTCTGTGGACTGAACAACATCCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCT 1669 Query 1890 TTCACCCTAATATCTTTTCAACTGAAAGCTATTTAGTGAATAATTGTCCA-ACTCCACAA 1948 | ||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||| Sbjct 1670 TGCACCCTAATATCTTTTCAACTGAAAGCTAATGAGTGAATAATTGTC-AGACTCCACAA 1728 Query 1949 ATTTTTCTCATGAAGCTTTTAGAGATTTTTACT 1981 ||||||||||||||||||||||||||||||||| Sbjct 1729 ATTTTTCTCATGAAGCTTTTAGAGATTTTTACT 1761 > Ahg898329 jgi|Araly1|898329|Al_scaffold_0005_2295 Length=1653 Score = 1639 bits (887), Expect = 0.0 Identities = 1372/1595 (86%), Gaps = 77/1595 (5%) Strand=Plus/Plus Query 330 AGAGAAGTTAAGAC-GTCGTCAAGAACAAGAGGAAGCAACGCGTCGA-ACAGCTTCGATC 387 |||||||||| | | | || || |||||||||||||| || ||| | |||||||| | Sbjct 111 AGAGAAGTTACG-CAGCCGGCAGGAACAAGAGGAAGCCACTCGT-AAGACAGCTTCAAAG 168 Query 388 TCTCTGGAAG-AGAATGACGAGTTTTCCAA-TAACTACGGCGACGTGACTCTTACCGAGT 445 ||||| |||| || |||||||||||| ||| ||||||||||||||||||||||| ||||| Sbjct 169 TCTCTCGAAGAAG-ATGACGAGTTTT-CAAGTAACTACGGCGACGTGACTCTTAACGAGT 226 Query 446 TGCAATCGTCGGCGGATCCGAAAGCCGGGAA-GTGGATAGAGGCTGTTG-AGGGAAAGGA 503 |||||||| ||| ||||||||||||| |||| |||| ||||||||||| |||| ||| | Sbjct 227 TGCAATCGACGGAGGATCCGAAAGCC-GGAATATGGAGAGAGGCTGTTGAAGGG-AAGAA 284 Query 504 GTGGACCGATGTGAGCGATTTGGTGGAAGAGAT-GTTGGAATCAGAGGTTCTGATCAGAG 562 |||||| || ||||| | ||||||||||| || | || ||| |||||| |||| |||| Sbjct 285 GTGGACTGAAGTGAGTAAATTGGTGGAAGAAATAG-CGGGATCTGAGGTTTTGATAAGAG 343 Query 563 GCCGAGTGCACACGAAT--CGTCCAACGTCTAACAAATTGGGGTTTGTGGTCTTGAGGGA 620 ||||||| |||||| || ||| |||| ||| | | | | ||||||| |||||||| | Sbjct 344 GCCGAGTTCACACGTATCGCGTACAAC--CTAGC--A-TAGTGTTTGTGATCTTGAGGAA 398 Query 621 GAGCGGATCAACTGTTCAGTGCGTGG-TTAGCCAATCAGAGAAGACCAAAG-TAGGTGCC 678 || ||||| |||||||||||||||| || ||||| ||| ||||||| | || | | | Sbjct 399 AAGTGGATCCACTGTTCAGTGCGTGGCCAAG-CAATCGGAGGAGACCAACGTTA-GCGTC 456 Query 679 AACATGGTTAAATACCTCAAGCAGCTGAGTCGCGAATCCTTTGTCGATGTTATCGGTGTC 738 |||||| ||||||||||| || |||||||| |||||||| |||||||||| ||||||||| Sbjct 457 AACATGATTAAATACCTCGAGAAGCTGAGTTGCGAATCCATTGTCGATGTCATCGGTGTC 516 Query 739 GTCACTCTCCCCAAGGAGCCGCTG--ACGGGAACTACGCAGCAGGTTGAAATTCAAGTGA 796 ||| ||||||||| || || ||| | ||||||||||||||||||||||||||| |||| Sbjct 517 GTCGTTCTCCCCAAAGA-CC-CTGTAAAGGGAACTACGCAGCAGGTTGAAATTCAGGTGA 574 Query 797 GAAAAG-TGTACTGCATCAACAAATCCTTGGCCAA-ATTACCACTTAGTGTGGAGGATGC 854 | |||| |||||||| |||||||| |||| | ||| ||||||| ||| |||||||| ||| Sbjct 575 G-AAAGCTGTACTGCGTCAACAAAGCCTT-GACAAGATTACCATTTAATGTGGAGGCTGC 632 Query 855 TGCTCGGAGTGAAGCAGATATCGAAGCATCTCTTCAGACTCCATCTCCAGCTGCTCGTGT 914 ||| || |||| | | | | | | | ||| | | || | || ||||| Sbjct 633 TGCCCGAAGTG-A--A-A-CT-G--G-A-------AGA--CGAGCT---G-TG--CGTGT 668 Query 915 CAATCAGGATACACGTTTGAACT-ATAGGGTGCTCGACCTCAGAACACCGGCTAATCAAG 973 ||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||| Sbjct 669 CAATCAGGATACACGTTTGAA-TCATAGGGTGATTGACCTCAGAACACCGGCTAATCAAG 727 Query 974 CCATCTTC-CAGCTTCAGTACGAAGTCG-AATATGCCTTCAGAGAAAAATTACGATTTAA 1031 ||||| || | ||| ||| | || ||| || || ||||| ||||| || | || || Sbjct 728 CCATCGTCGC-CCTTAAGTCCCAACTCGTAA-ATTTTTTCAGTGAAAATTTGCTATCCAA 785 Query 1032 GAATTTTGTTGGA-ATCCACACACCAAAACTGATGGCTGGTAGTAGTGAAGGAGGTTCTG 1090 | |||| ||| | ||| |||||| ||||| |||| |||||||||||||||||||||| Sbjct 786 GGATTTCGTT-AATATCTTCACACCGAAACTCCTGGCCGGTAGTAGTGAAGGAGGTTCTG 844 Query 1091 CTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTGTCTAGCTCAGTCTCCTCAGCTCC 1150 |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| | Sbjct 845 CTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTGTCTAGCTCAGTCTCCTCAGCTTC 904 Query 1151 ACAAGCAAATGGCAATATGTGGTGACTTGCGACGTGTCTTTGAGGTAGGTCCTGTTTTCA 1210 |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 905 ACAAGCAAATGGCAATATGTGGTGACTTACGACGCGTCTTTGAGATAGGTCCTGTTTTCA 964 Query 1211 GGGCCGAAGACTCCTTCACTCATAGACACCTGTGTGAATTCGTTGGTCTTGATGTGGAGA 1270 | || ||| | || ||| |||||||||| ||||||||||| || |||||||||||||||| Sbjct 965 GAGCAGAAAAGTCGTTCTCTCATAGACATCTGTGTGAATTTGTGGGTCTTGATGTGGAGA 1024 Query 1271 TGGAGATTCG-GAAACACTATTCTGAGATAATGGATCTTGTGGACGAGTTATTTGTGTTT 1329 |||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 1025 TGGAGATT-GATAAACACTATTCTGAGATAATGGACCTTGTGGACGAGTTATTTGTGGCT 1083 Query 1330 ATATTCACTAGTTTGAATGAG-AGGTGCAAAAAAGAAC-TGCAAGCTGTTGGAAAGCAAT 1387 |||||||||||||||||| || | ||||||||| |||| || ||||| |||||||||||| Sbjct 1084 ATATTCACTAGTTTGAAT-AGCAAGTGCAAAAAGGAACTTG-AAGCTATTGGAAAGCAAT 1141 Query 1388 ACCCATTTGAACCTTTGAAGTTTCTACCAAAA-ACATTGAGGTTAACGTTTGAAGAAGGG 1446 ||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| Sbjct 1142 ACCCATTTGAACCTTTGAAGTTTCT-TGAAAAGACATTGAGGTTAACCTTTGAAGAAGGG 1200 Query 1447 GTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTCTTGGCGATCTAAACACTGAA 1506 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1201 GTTCAAATGCTTAAGGAAGCTGGTGTGGAGATTGATCCTCTAGGCGATCTAAACACTGAA 1260 Query 1507 TCTGAGAGAAAACTAGGCCAGCTTGTATTGGAAAAGTACAACACTGAGTTCTATATTCTG 1566 |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 1261 TCTGAGAGAAAACTTGGCCAACTTGTACTGGAAAAGTACAACACTGAGTTCTATATTCTG 1320 Query 1567 CATCGGTATCCTAAGGCAGTTAGGCCTTTCTACACAATGACTTGTGCCGATAATCCTCTT 1626 ||| ||| ||||| ||| ||||||||||||||||| |||||||||| |||||||||||| Sbjct 1321 CATAGGTTTCCTACGGCCGTTAGGCCTTTCTACACTATGACTTGTGTTGATAATCCTCTT 1380 Query 1627 TACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGT 1686 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 TACAGCAACTCCTTTGATGTCTTCATCAGAGGTGAGGAGATCATATCAGGAGCTCAACGT 1440 Query 1687 GTCCATATCCCAGAAGTCTTGGAGCAACGTGC-AGG-AGAATGTGGCATTGATGTCAAGA 1744 ||||||||||||||| | |||||||||||||| ||| || | | || ||||||||||||| Sbjct 1441 GTCCATATCCCAGAATTATTGGAGCAACGTGCGAGGGAGCACG-GG-ATTGATGTCAAGA 1498 Query 1745 CAATATCCACATACATTGATTCATTCAGGTACGGTGCGCCTCTACACGGTGGATTTGGAG 1804 |||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||| Sbjct 1499 CAATATCCACATACATCGATTCATTCAGGTATGGTGCGCCTCCACACGGTGGATTTGGAG 1558 Query 1805 TGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGCACTGAACAACATTCGGAAAACATCCC 1864 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | Sbjct 1559 CGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGGACTGAACAACATCCGGAAAACATCGC 1618 Query 1865 TCTTCCCTCGTGACCCTCAAAGGCTTTCACCCTAA 1899 |||||||||| ||||||||||||||| |||||||| Sbjct 1619 TCTTCCCTCGCGACCCTCAAAGGCTTGCACCCTAA 1653 > Ahg490730 jgi|Araly1|490730|fgenesh2_kg.7__163__AT4G26870.1 Length=1691 Score = 1134 bits (614), Expect = 0.0 Identities = 1182/1445 (82%), Gaps = 84/1445 (6%) Strand=Plus/Plus Query 486 GGCTGTTGAGGGAAAGGAG-TGGACCGATGTGAGCGATTTGGTGGAAGAGA-TGTTGGAA 543 ||||||||||||||| ||| | ||| ||||||||| | ||||| ||||||| || ||| Sbjct 162 GGCTGTTGAGGGAAAAGAGCT-GACTGATGTGAGCAACTTGGTTGAAGAGATTG-TGGGG 219 Query 544 TCAGAGG-TTCTGATCAGAGGCCGAGTGCACACGAATCGTCCAACGTC--TAACAAATTG 600 ||||||| ||| ||||||||| |||||||||| |||||| | | ||| || |||||| Sbjct 220 TCAGAGGTTTC-GATCAGAGGTCGAGTGCACAAGAATCG-CTTA-GTCGGTACCAAATT- 275 Query 601 GGGTTTGTGGTCTTGAGGGAGAGCGGA-TCAACTGTTCAGTGCGTGGTTAGCCAATCAGA 659 ||||||| |||||||||| || ||| || || ||||| ||||||| | | || Sbjct 276 --GTTTGTGATCTTGAGGGAAAGTGGATTC-ACGGTTCAATGCGTGG-T-G-------GA 323 Query 660 GAAGACCAAAGTAGGTGCCAACATGGTTAAATACCTCAAGCAGCTGAGTCGCGAATCCT- 718 | |||||| ||| ||||| |||||| |||||| |||||||||||||||| |||| || Sbjct 324 GGAGACCAGAGTTGGTGCAAACATGATTAAATTTGTCAAGCAGCTGAGTCGTGAAT-CTG 382 Query 719 TTGTCGATG-TTATCGGTGTCGTCACTCTCCCCAAGGAGCCGCTGACGGGAACTACGCAG 777 |||| || | |||||||||||||| ||| ||| ||| |||| || || ||||| || | Sbjct 383 TTGTTGA-GCTTATCGGTGTCGTCTCTCACCCTAAGAAGCCTCTCACAGGAACCAC-C-- 438 Query 778 CAGGTTGAAATTCAAGTGAGAAAAGTGTACTGCATCAACAAATCCTTGGCCAAA-TTACC 836 || | | | || |||| |||||||| || || |||||| || ||| ||||| Sbjct 439 CA----G-----C-A--GA-AAAA-TGTACTGCCTC-GCAGATCCTT-GCTAAATTTACC 482 Query 837 ACTTAG-TGTGGAGGATGCTGCTCGGAGTGAAGCAGATATCGAAGCATCTCTTC-A-GAC 893 |||| | |||||||||||||||||| |||||| ||||||| ||| |||| | | || Sbjct 483 ACTT-GTTGTGGAGGATGCTGCTCGTAGTGAATCAGATATTGAAAAATCT-GGCAAGGA- 539 Query 894 T-CCATCTCCAGCTGCTCGTGTCAATCAGGATACACGTTTGAACT-ATAGGGTGCTCGAC 951 | || ||||||||||||||| |||||| ||||||||||| | ||||||| || ||| Sbjct 540 TGGCA-AACCAGCTGCTCGTGTCCTTCAGGACACACGTTTGAA-TAATAGGGTTCTTGAC 597 Query 952 CTCAGAACACCGGCTAATCAAGCCATCTTCCAG-CTTCAGTACGAAGT-CGAATATGCCT 1009 |||||||||||||||||||||||||||||| | |||||| | |||| | ||| || | Sbjct 598 ATCAGAACACCGGCTAATCAAGCCATCTTCC-GTATTCAGTGCCAAGTCCAAAT-TG-AT 654 Query 1010 -TCAGAGAAAAATTACGAT-TTAAGAATTTTGTTGGAATCCACACACCAAAACTGATGGC 1067 | | || | | || ||| | || ||| |||||||||||| ||| ||||||| Sbjct 655 ATTA-TGATTTGTCATTATCCTAATAGGGTTCTTGAAATCCACACACCGAAATTGATGGC 713 Query 1068 TGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTG 1127 ||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 714 TGGCAGTAGTGAAGGAGGTTCCGCTGTATTTAGGTTGGACTACAAAGGGCAGCCTGCTTG 773 Query 1128 TCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGTGGTGACTTGCGACGTGT 1187 ||| ||||||||||||||||| || ||||| ||||| |||||||||||| ||||||| || Sbjct 774 TCTGGCTCAGTCTCCTCAGCTTCATAAGCAGATGGCGATATGTGGTGACATGCGACGCGT 833 Query 1188 CTTTGAGGTAGGTCCTGTTTTCAGGGCCGAAGACTCCTTCACTCATAGACACCTGTGTGA 1247 ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 834 CTTTGAGGTTGGTCCTGTTTTCAGAGCTGAAGACTCCTTCACTCATAGACACCTGTGTGA 893 Query 1248 ATTCGTTGGTCTTGATGTGGAGATGGAGATTCGGAAA-CACTATTCTGAGATAATGGATC 1306 ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 894 ATTCGTTGGTCTTGATGTGGAGATGGAGATTCG-AATGCACTACTCTGAGATAATGGATC 952 Query 1307 TTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTT-GAATGAGAGGTGCAAAAAAGAA 1365 |||||| ||||| ||| ||| |||||||| | | ||| || |||||| ||| ||| Sbjct 953 TTGTGGGGGAGTTGTTTCCGTTCATATTCACAAAAATAGAA-GAAAGGTGCCCAAAGGAA 1011 Query 1366 CT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAAAACATT 1424 || | || |||| ||||||||||||| ||| || ||||||||||||| || ||||||| Sbjct 1012 CTTG-AATCTGTCAGAAAGCAATACCCTTTTCAATCTTTGAAGTTTCTTCCGCAAACATT 1070 Query 1425 GAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCC 1484 |||| |||| |||| ||||||| |||||||||||||||||||||| | |||||||||||| Sbjct 1071 GAGGCTAACCTTTGCAGAAGGGATTCAAATGCTTAAGGAAGCTGGCGAGGAGGTTGATCC 1130 Query 1485 TCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT-TGGAAAAGT 1543 |||||| |||||||| || ||||||||||| ||||| ||||||||||| | ||||||||| Sbjct 1131 TCTTGGTGATCTAAATACAGAATCTGAGAGGAAACTTGGCCAGCTTGT-TCTGGAAAAGT 1189 Query 1544 ACAACACTGAGTTCTATATTCTGCATCGGTATCC-TAAGGCAGTTAGGCCTTTCTACACA 1602 |||| || |||||||| || |||||||| ||||| | ||| || || || |||||||| Sbjct 1190 ACAAGACGGAGTTCTACATGCTGCATCGCTATCCATC-GGCTGTCAGACCGTTCTACACT 1248 Query 1603 ATGACTTGTGCCGATAATCCTCTTTACAGCAACTCTTTTGATGTCTTCATCAGAGGTGAG 1662 ||| | | || || || || ||||||||||| || ||||||||||||||||| ||| Sbjct 1249 ATGCCCTATGAAAATGATTCTAACTACAGCAACTCGTTCGATGTCTTCATCAGAGGAGAG 1308 Query 1663 GAGATCATATCAGGAGCTCAACGTGTCCAT-ATCCCAGAAGTCTTGGAGCAA-CGTGCAG 1720 |||||||| ||||||||||||||| ||||| | ||||||| |||||||| || || ||| Sbjct 1309 GAGATCATGTCAGGAGCTCAACGTATCCATGA-CCCAGAACTCTTGGAG-AAGCGCGCAA 1366 Query 1721 GAGAATG-TGGCATTGATGTCAAGACAATATCCACATACATTGATTCATTCAGGTACGGT 1779 ||||||| || |||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1367 GAGAATGCTG-CATTGATGTCAAGACAATATCCACGTACATTGATGCATTCAGGTACGGT 1425 Query 1780 GCGCCTC-TACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGC 1838 || || | | ||||||||||| ||||||||||||||||| ||||| ||||| || ||||| Sbjct 1426 GCACCACCT-CACGGTGGATTCGGAGTGGGGCTGGAGCGTGTGGTAATGCTCTTATGTGC 1484 Query 1839 ACTGAACAACATTCGGAAAACATCCCTCTTCCCTCGTGACCCTCAAAGGCTTTCACCCTA 1898 || || ||||| || ||||| || || |||||||||||| |||||||||| | ||||| Sbjct 1485 CCTCAATAACATCCGCAAAACTTCGCTATTCCCTCGTGACTCTCAAAGGCTCACTCCCTA 1544 Query 1899 ATATC 1903 ||||| Sbjct 1545 ATATC 1549 > Ahg921463 jgi|Araly1|921463|scaffold_102744.1 Length=610 Score = 337 bits (182), Expect = 2e-91 Identities = 228/250 (91%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 1297 ATAATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAGAGGTGC 1356 |||||||| |||||||||||||||||||||||||||||||||||||||||| | | ||| Sbjct 342 ATAATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATAACAAATGC 401 Query 1357 AAAAAAGAACT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACC 1415 ||||| ||||| | ||||| ||||||| |||||||||||| |||||||||||||||| Sbjct 402 AAAAAGGAACTTG-AAGCTATTGGAAAACAATACCCATTTAAACCTTTGAAGTTTCTTG- 459 Query 1416 AAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGG 1474 |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 460 AAAAGACATTGAGGTTAACGTTTGAAGAAGGGATTCAAATTCTTAAGGAAGCTGGTGTGG 519 Query 1475 AGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT 1534 || |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| Sbjct 520 AGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTAC 579 Query 1535 TGGAAAAGTA 1544 |||||||||| Sbjct 580 TGGAAAAGTA 589 > Ahg892257 jgi|Araly1|892257|Al_scaffold_0006_253 Length=246 Score = 337 bits (182), Expect = 2e-91 Identities = 226/247 (91%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 1300 ATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAGAGGTGCAAA 1359 ||||| |||||||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 1 ATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATAACAAATGCAAA 60 Query 1360 AAAGAACT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAA 1418 || ||||| | ||||| ||||||| |||||||||||| |||||||||||||||| ||| Sbjct 61 AAGGAACTTG-AAGCTATTGGAAAACAATACCCATTTAAACCTTTGAAGTTTCTTG-AAA 118 Query 1419 A-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGG 1477 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 119 AGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGGAGA 178 Query 1478 TTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTATTGG 1537 |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| ||| Sbjct 179 TTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTACTGG 238 Query 1538 AAAAGTA 1544 ||||||| Sbjct 239 AAAAGTA 245 > Ahg922616 jgi|Araly1|922616|scaffold_103897.1 Length=541 Score = 244 bits (132), Expect = 2e-63 Identities = 158/170 (93%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 1376 TTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACCAAAA-ACATTGAGGTTAACG 1434 ||||||| |||||||||||| |||||||||||||||| |||| ||||||||||||||| Sbjct 353 TTGGAAA-CAATACCCATTTAAACCTTTGAAGTTTCT-TGAAAAGACATTGAGGTTAACG 410 Query 1435 TTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGGAGGTTGATCCTCTTGGCGAT 1494 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 411 TTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGGAGATTGATCCTCTTGGCGAT 470 Query 1495 CTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTATTGGAAAAGTA 1544 ||||||||||||||| |||||||||| ||||| |||||| |||||||||| Sbjct 471 CTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTACTGGAAAAGTA 520 Score = 196 bits (106), Expect = 4e-49 Identities = 148/168 (88%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 1005 TGCCTTCAGAGAAAAATTACGATTTAAGAATTTTGTTGGA-ATCCACACACCAAAACTGA 1063 ||| ||| ||||||| || | || ||| |||||||| | ||||||||||| ||||| Sbjct 177 TGCGTTC-GAGAAAATTTGCTATCCAAGGATTTTGTT-AATATCCACACACCGAAACTCT 234 Query 1064 TGGCTGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTG 1123 |||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||| Sbjct 235 TGGCCGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACCAAGGACAGCCTG 294 Query 1124 CTTGTCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATATGTG 1171 ||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 295 CTTGTCTAGCTCAGTCTCCTCAGCTTCACAAGCAAATGACAATATGTG 342 > Ahg491627 jgi|Araly1|491627|fgenesh2_kg.7__1060__AT4G31160.1 Length=5805 Score = 217 bits (117), Expect = 3e-55 Identities = 145/158 (92%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 23 TTCATGGCCGTCGCTGCTAAGGTCATCATCCCCACTATCGCTATTGTCTCCAGCTAGTCC 82 ||||| | |||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct 5498 TTCATTGTCGTCGCTGCTAAGGTCATCATCCCCACTATCGCTATCGTCTACACCTAGTCC 5439 Query 83 CAGAATTCGATCCAGGtcatcttcgtcttcatcatcttcatcttcatcttcatcttccgt 142 ||||||||| |||||||||||||| | || || || ||||||||||||||||| ||||| Sbjct 5438 CAGAATTCGGTCCAGGTCATCTTC--C-TCGTCTTCATCATCTTCATCTTCATCGTCCGT 5382 Query 143 ctcatcatcatcatcgggatccgagtcatcatctGTTG 180 |||||||||||||||||||||||||||||||||||||| Sbjct 5381 CTCATCATCATCATCGGGATCCGAGTCATCATCTGTTG 5344 > Ahg914068 jgi|Araly1|914068|Al_scaffold_0001_4322 Length=321 Score = 200 bits (108), Expect = 3e-50 Identities = 123/130 (95%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 1416 AAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGG 1474 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 191 AAAAGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGG 250 Query 1475 AGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT 1534 || |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| Sbjct 251 AGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTAC 310 Query 1535 TGGAAAAGTA 1544 |||||||||| Sbjct 311 TGGAAAAGTA 320 Score = 196 bits (106), Expect = 4e-49 Identities = 143/161 (89%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 1009 TTCAGAGAAAAATTACGATTTAAGAATTTTGTTGGA-ATCCACACACCAAAACTGATGGC 1067 ||||||||||| || | || ||| |||||||| | ||||||||||| ||||| |||| Sbjct 4 TTCAGAGAAAATTTGCTATCCAAGGATTTTGTT-AATATCCACACACCGAAACTCTTGGC 62 Query 1068 TGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTG 1127 |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 63 CGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTG 122 Query 1128 TCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATAT 1168 ||||||||||||||||||||| |||||||||||| |||||| Sbjct 123 TCTAGCTCAGTCTCCTCAGCTTCACAAGCAAATGACAATAT 163 > Ahg902234 jgi|Araly1|902234|Al_scaffold_0004_2884 Length=321 Score = 200 bits (108), Expect = 3e-50 Identities = 123/130 (95%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 1416 AAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGG 1474 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 191 AAAAGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGG 250 Query 1475 AGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT 1534 || |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| Sbjct 251 AGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTAC 310 Query 1535 TGGAAAAGTA 1544 |||||||||| Sbjct 311 TGGAAAAGTA 320 Score = 191 bits (103), Expect = 2e-47 Identities = 142/161 (88%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 1009 TTCAGAGAAAAATTACGATTTAAGAATTTTGTTGGA-ATCCACACACCAAAACTGATGGC 1067 ||||||||||| || | || ||| |||||||| | ||||||||||| ||||| |||| Sbjct 4 TTCAGAGAAAATTTGCTATCCAAGGATTTTGTT-AATATCCACACACCGAAACTCTTGGC 62 Query 1068 TGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTG 1127 |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 63 CGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTG 122 Query 1128 TCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATAT 1168 |||||||||||||||||| || |||||||||||| |||||| Sbjct 123 TCTAGCTCAGTCTCCTCAACTTCACAAGCAAATGACAATAT 163 > Ahg344517 jgi|Araly1|344517|fgenesh1_pg.C_scaffold_4000859 Length=372 Score = 196 bits (106), Expect = 4e-49 Identities = 129/140 (92%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 1406 AGTTTCTACCAAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAA 1464 ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 233 AGTTTCT-TGAAAAGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAA 291 Query 1465 GCTGGTGTGGAGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGC 1524 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | | Sbjct 292 GCTGGTGTGGAGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGAC 351 Query 1525 CAGCTTGTATTGGAAAAGTA 1544 || |||||| |||||||||| Sbjct 352 CAACTTGTACTGGAAAAGTA 371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79989514500 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5