BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31230.1
Length=2469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491618 jgi|Araly1|491618|fgenesh2_kg.7__1051__AT4G31230.1 4054 0.0
Ahg481293 jgi|Araly1|481293|fgenesh2_kg.4__353__AT2G24370.1 1230 0.0
> Ahg491618 jgi|Araly1|491618|fgenesh2_kg.7__1051__AT4G31230.1
Length=2469
Score = 4054 bits (2195), Expect = 0.0
Identities = 2379/2470 (96%), Gaps = 4/2470 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAGAACAGGAGGGACAGAGACGGAGGATTTGGCGTGGATGGATTGGTTGCTGTG 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAAGCACAGGAGGGACAGAGACGGAGGATTTGGCGTGGATGGATTGGTTGCTGTG 60
Query 61 GCGATAGACAGAGACAAAAACAGCCAAGGTGCTCTGAAATGGGCTGTTGATAATTTGTTG 120
|| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GCCATCGACAGAGACAAAAACAGCCAAACTGCTCTGAAATGGGCTGTTGATAATTTGTTG 120
Query 121 CAGAAAGGCCAAACCGTAGTCCTCGTACATGTCAAGCCTCGGGCTTCATCTTTGTCCACA 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGAAAGGCCAAACCGTCGTCCTCGTACATGTCAAGCCTCGGGCTTCATCTTTGTCCACA 180
Query 181 AACCCTTCAATCAACTCAAACTCTTCTAAGACGAGCCAAATAAATGGTGATTCTTCATTG 240
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 181 AACCCTTCAATCAACTCAAACTCTTCTAAGATGAGCCAAATAAATAATGATTCTTCATTG 240
Query 241 GTGTGTGGAGAACCAGAAGGCTCTTATAAACAGTTGTTTCTTCCTTTTCGTTGCCTCTGT 300
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 241 GTGTGTGGAGACCCAGAAGGCTCTTATAAACAGTTGTTCCTTCCTTTTCGTTGTCTCTGT 300
Query 301 TCACGCAAAGATATACAATGCAAAGATGTGTTATTGGAGGAGTCAGATGTGGCGAGAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TCACGCAAAGATATACAATGCAAAGATGTGTTATTGGAGGAGTCAGATGTGGCGAAAGCT 360
Query 361 TTAGTCGAATACGCAAATCAGGTCATGATTGAGGTATTGGTGGTTGGTTCCTCCTCGAAA 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 361 TTAGTCGAATACGCAAATCAGGTCGTGATTGAGGTATTGGTGGTTGGTTCCTCTTCAAAA 420
Query 421 GGTGGCTTTCTCAGGTTCAACAAACCTATTGATATTCCAGGAGCCATCACCAAGACTGCA 480
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 421 GGTGGCTTTCTCAGGTTCAACAAACCTACAGATATTCCAGGAACCATCACCAAGACCGCA 480
Query 481 CCTGATTTCTGCACGGTGTATGCCATAACCAAAGGAAAGCTTTCAACAAAGAAAACAGCT 540
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTGATTTCTGCACGGTTTATGTCATAACCAAAGGAAAGCTTTCAACAAAGAAAACAGCT 540
Query 541 TCTCGTGCTGCGCCGTCTGTTTCTCCATTACGCATCCAGCTTCAACAGAATGGCTTAAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 541 TCTCGTGCTGCGCCGTCTGTTTCTCCATTACGCATCCAGCTTCAACAGACTAGCTTAAAG 600
Query 601 CCACATCCACCTTTGCCTTCTGCAACTACTAACACAAGAGCTGAGAGACAGTCATTTGAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCACATCCACCTTTGCCTTCTGCAACTACTAACACAAGAGCTGAGAGACAGTCATTTGAG 660
Query 661 TCTCAGCATCGCAGGTCCCTTGACGATCAGTCAGATTCCTTCAGGCCACCCTACAATAAA 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 661 TCTCAGCATCGCAGGTCCCTTGACGATCAGTCAGATTCCTTCAGGTCACCCTACACTAGA 720
Query 721 AGAGGCTTGACTGGGAGATCATATGGAGAACTATCAATCCCGGATTCTGAAATATCCTTC 780
|||||||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||
Sbjct 721 AGAGGCTTGAATGGGAGATCATATGGAGACCTATCAATCCCGGATTCTGACATATGCTTC 780
Query 781 AACAGCTCTGGAAGACCAAGCATAGAGCGCAACTCTCCTTCCTTATATGACAATTCGGAT 840
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 781 AACAGCTCTGGAAGACCAAGCATTGAGCGCAACTCTCCTTCCTTGTACGACAATTCGGAT 840
Query 841 CCAAACCGGACTCCTCCAAGGCTATCAAATTTCTCAGACGTTGACTATTGTAGCTTCGAG 900
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 841 CCAAACCGGACTCCTCCAAGGCTATCAAATTTCTCAGACATTGACTATGGTAGCTTCGAG 900
Query 901 TCAATGACCTTCGGAAGGAGGTCAATGGATTTGAGCTCACCAACTGCTTTCTCAACTGGC 960
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 901 TCAATGACCTTCGGAAGGAGGTCAATGGATATAAGCTCACCAACTGCTTTCTCAACTGGC 960
Query 961 TCATTTGAGAATGAAAGGTTTTCATCGGCTTCTCAAGGAGGGGATGATGTAGAGGCTGAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCATTTGAGAATGAAAGGTTTTCATCGGCTTCTCAAGGAGGGGATGATGTAGAGGCTGAG 1020
Query 1021 ATGAGGAGGCTTAAACTGGAGCTGAAACAAACGATGGAAATGTACAGTACAGCCTGTAAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1021 ATGAGGAGGCTTAAACTGGAGCTGAAACAAACGATGGAAATGTACAGTACAGCTTGCAAG 1080
Query 1081 GAAGCTCTCACAGCAAAACATAAGGCAACAGAGCTTCAACGTTGGAAGTTAGCAGAAGAA 1140
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1081 GAAGCTCTCACAGCAAAACATAAGGCAACAGAGCTTCAACGCTGGAAGTTAGCAGAAGAA 1140
Query 1141 CGGAAATTCGAAGAAGCAAAGCTTGCAGAGGAAGCTGCATTAGCCATTGCGGAGAAGGAG 1200
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGGAAATTCGAAGAGGCAAAGCTTGCAGAGGAAGCTGCATTAGCCATTGCGGAGAAGGAG 1200
Query 1201 AAAGCAAAGTCCAAAGCAGCAATGGAAGCAGCTGAGGCAGCTCAAAGGATTGCTGATATC 1260
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1201 AAAGCAAAGTCCAAAGCAGCAATGGAAGCAGCTGAAGCAGCTCAAAGGATTGCTGATATC 1260
Query 1261 GAGTCCCGAAAGAGAGTCGATGCAGAAACGAAAGCTCTGAAGGAATCAGAGGCGAGAACA 1320
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1261 GAGTCCCGAAAGAGAGTCGATGCAGAAATGAAAGCTCTGAAGGAATCAGAGGCGAGAACA 1320
Query 1321 AAAGCCGTGAATGCTTTAGCAAAG---GATGTCAGATACAGGAAGTACTCCATTGAGGAG 1377
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1321 AAAGCCGTGAATGCTTTAGCAAACTCAGATGTCAGATACAGGAAGTACTCCATCGAGGAG 1380
Query 1378 ATTGAGGATGCAACAGAGTTCTTTGATGATAAATACAAGATCGGAGAAGGCAGTTATGGA 1437
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1381 ATTGAGGATGCAACAGAGTTCTTTGATGAGAAATACAAGATCGGAGAAGGCGGTTATGGA 1440
Query 1438 CCTGTCTACAAGTGTTATCTGGATCACACACCTGTGGCTGTCAAAGCTTTGCGCCCAGAT 1497
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1441 CCTGTCTACAAGTGTTATCTGGATCACACACCTGTGGCTGTGAAAGCTTTGCGCCCAGAT 1500
Query 1498 GCAGCTCAAGGCAGGTCACAGTTTCAGAAAGAGGTTGAAGTGTTATGCAGTATAAGGCAC 1557
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1501 GCAGCTCAAGGCAGGTCACAGTTTCAGCAAGAGGTTGAAGTGTTAAGCAGTATAAGGCAC 1560
Query 1558 CCTAACATGGTTCTTCTGCTTGGAGCATGCCCAGAATGTGGATGCTTAGTGTATGAGTTC 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CCTAACATGGTTCTTCTGCTTGGAGCATGCCCAGAATGTGGATGCTTAGTGTATGAGTTC 1620
Query 1618 ATGGCTAATGGGAGCTTAGAAGACCGTCTTTTCAGACAAGGAGACAGCCCGGCTCTCTCT 1677
|||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 1621 ATGGCTAATGGGAGCTTAGAAGACCGTCTTTTCAGAGAAGGAGACAGCCCGCCCCTCTCT 1680
Query 1678 TGGCAAACAAGATTCAGAATTGCTGCAGAGATCGGCACTGTACTGTTGTTCCTCCACCAG 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 TGGCAAACAAGATTCAGAATTGCTGCAGAGATCGGCACTGTACTGTTGTTCCTCCACCAG 1740
Query 1738 ACTAAACCAGAACCACTGGTTCACCGTGATCTCAAACCAGCAAACATCTTACTAGACCGC 1797
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1741 ACTAAACCAGAACCACTGGTTCACCGTGATCTCAAACCAGCAAATATCTTACTAGACCGC 1800
Query 1798 AACTTTGTCAGCAAGCTTGCTGATGTTGGCTTGGCTAGGCTGGTCCCTCCATCCGTTGCA 1857
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 AACTTTGTCAGCAAGGTTGCTGATGTTGGCTTGGCTAGGCTGGTCCCTCCATCCGTTGCA 1860
Query 1858 AACACCGTGACGCAATACCACATGACATCAACTGCTGGCACGTTTTGCTACATCGACCCA 1917
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1861 AACACCGTGACGCAATACCGCATGACATCAACTGCTGGCACATTTTGCTACATCGACCCA 1920
Query 1918 GAGTATCAGCAGACGGGTATGCTGGGTGTGAAATCTGACATTTATTCGCTTGGTATTATG 1977
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1921 GAGTATCAACAGACGGGGATGCTGGGTGTGAAATCTGACATTTATTCGCTTGGCATTATG 1980
Query 1978 TTTCTGCAGTTAATAACAGGAAAACCACCTATGGGTCTAACCCATTATGTCGAAAGAGCT 2037
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1981 TTTCTGCAGTTAATAACAGGAAAACCACCTATGGGTCTAACCCATTATGTGGAAAGAGCC 2040
Query 2038 CTCGAGAAGGGTAATTTGAAAGATTTGCTCGATCCAGCTGTGTCTGATTGGCCTGTTGAA 2097
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2041 CTCGAGAAGGGTAATTTGAAAGATTTGCTCGATCCTGCTGTGTCTGATTGGCCTGTTGAA 2100
Query 2098 GACACCACAGAGTTTGCCAAGTTGGCTCTCAAGTGCGCAGAGATAAGGCGAAAAGACAGA 2157
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 GATACCACAGAGTTTGCCAAGTTGGCTCTCAAGTGCGCAGAGATAAGGCGAAAAGACAGA 2160
Query 2158 CCTGATCTTTCCAAAGTTATATTGCCAGAGCTCAACAGATTAAGAGTACTTGCTGAAGAA 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 CCTGATCTTTCCAAAGTTATATTGCCAGAGCTCAACAGATTAAGAGTACTTGCTGAAGAA 2220
Query 2218 TCAACACAGGCTGCAGTAGTCATTAACAGCTCCGGACCAACCCCCACGGAGAGTCAAACT 2277
|||||| || |||||||||||||||| ||| |||||||||||||||| |||||||||| |
Sbjct 2221 TCAACAAAGACTGCAGTAGTCATTAATAGCCCCGGACCAACCCCCACTGAGAGTCAAAGT 2280
Query 2278 TCCTCCCCCAAGTTGTGAGGACTGATAAGCAATTGATCTGCACGTAGAAAGAGACAGAGG 2337
||||||||||||||||||| | |||||| |||||||||||||| || |||||||||||||
Sbjct 2281 TCCTCCCCCAAGTTGTGAGAAATGATAAACAATTGATCTGCACATAAAAAGAGACAGAGG 2340
Query 2338 ATCCAAATGGAACCAGTAATCCATGTTCCACCTTAAGTTACACTTAAACTTAAAAGGTAT 2397
|| |||||| ||| |||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 2341 ATTCAAATGCAACTAGTAATCCATTTTCCACCT-AAGTTACACTTATCCTTAAAAGGTAT 2399
Query 2398 ACATGCTCATGAAAAACGCAACTGAATTTGTATGCTCAGTATATAATACAGTAGAGTCTT 2457
||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2400 ACACGCTCATGAAAAAGGCAACTGAATTTGTATGCTCACTATATAATACAGTAGAGTCTT 2459
Query 2458 TCCCTTGTAG 2467
|| |||||||
Sbjct 2460 TCACTTGTAG 2469
> Ahg481293 jgi|Araly1|481293|fgenesh2_kg.4__353__AT2G24370.1
Length=2365
Score = 1230 bits (666), Expect = 0.0
Identities = 1303/1605 (81%), Gaps = 65/1605 (4%)
Strand=Plus/Plus
Query 663 TCAGCATCGCAGGTCCCTTGACGATCAGTCAGATTCCTTCAGGCCACCCTACAATAA-AA 721
||| || || ||||| | || ||||| ||||| |||||||| | ||| | || ||
Sbjct 711 TCAACAACGGAGGTCAATGGAGGATCAATCAGAGTCCTTCAGATC-TCCTTTTACAAGAA 769
Query 722 GAGGCTTGACTGGGAGATCATATGGAGAACTATCAATCCCGGATTCTGAAATATCCTTCA 781
||||| | ||||| |||||| || || || || | ||||| || || ||||| || |
Sbjct 770 GAGGC---AATGGGAAATCATACGGTGATCTGTCTGTTCCGGAATCAGACATATCTTTTA 826
Query 782 ACAGCTCTGGAAGACCAAGCATAGAGCGCAAC-TCTCCTTCCT-TATATGACAATTCGGA 839
|| ||||||||||||||||| || || | | || |||| || |||||||||| ||
Sbjct 827 TTAGTTCTGGAAGACCAAGCATTGACCGTATCTTC-CCTT-CTCTATATGACAACAATGA 884
Query 840 TCCAAACC-GGACTCCTCCAAGGCTATCAAATTTCTCAGACGTTGAC--TA-TTGT-AGC 894
||| |||| | |||||||| ||||| ||||||||||||||| | ||| || || | | |
Sbjct 885 TCC-AACCAGAACTCCTCCTAGGCTGTCAAATTTCTCAGACATGGACTATAGTTCTAACC 943
Query 895 -T--TCGAGTCAAT-GACCT-TCGGAAGGAGGTCAATGGATTTGAGCTCACCAACTGCTT 949
| || |||| | | || | |||||||| ||| ||||||||| |||||| |||| |
Sbjct 944 TTGATC-AGTC-TTCCAACTAT-GGAAGGAGATCAGTGGATTTGAACTCACCTACTG-AT 999
Query 950 TCTCAACTGGCTCATTTGAGAATGAAAGGTTTTCATCGGCTTCTCAAGGAGGGGATGATG 1009
| | | | | ||| ||||| |||||||| || |||||| | |||||||
Sbjct 1000 T-T---C--G---A---GAG--CGAAAGATTTTCATCCGCCTCTCAATCAATAGATGATG 1045
Query 1010 TAGAGGCTGAGATGAGGAGGCTTAAACTGGAGCTGAAACAAACGATGGAAATGTACAGTA 1069
|||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||
Sbjct 1046 TAGAGGCTGAGATGAGGAGGCTTAAACTGGAGTTGAAGCAGACTATGGAAATGTACAGTA 1105
Query 1070 CAGCCTGTAAGGAAGCTCTCACAGCAAAACATAAGGCAACAGAGCTTCAACGTTGGAAGT 1129
|||| || || ||||| |||||||||||||| ||||| || |||||||| ||||||||||
Sbjct 1106 CAGCTTGCAAAGAAGCACTCACAGCAAAACAAAAGGCGACGGAGCTTCAGCGTTGGAAGT 1165
Query 1130 TAGCAGAAGA-ACGGAAATTCGAAGAAGCAA-AGCTTGCAGAGGAAGCTGCATTAGCCAT 1187
||| |||||| | ||||| | ||||| |||| | | |||||||||||| |||||||||||
Sbjct 1166 TAGAAGAAGAGA-GGAAACTAGAAGAGGCAAGA-CATGCAGAGGAAGCAGCATTAGCCAT 1223
Query 1188 TGCGGAGAAGGAGAAAGCAAAGTCCAAAGCAGCAATGGAAGCAGCTGAGGCAGCTCAAAG 1247
|| ||||| |||||||||||||| ||||| || ||||| |||||||| |||||||||||
Sbjct 1224 CGCAGAGAAAGAGAAAGCAAAGTCGAAAGCGGCTATGGAGGCAGCTGAAGCAGCTCAAAG 1283
Query 1248 GATTGCTGATATC-GAGTCCC-GAAAGAGAGTCGATGCAGAAACGAAAGCTCTGAAGGAA 1305
|||||||| || ||| | ||| ||||||| | || |||| ||||||||| |||||
Sbjct 1284 AATTGCTGA-ATTAGAGGCTAAGAA-GAGAGTCAACGCGGAAATGAAAGCTCTAAAGGAG 1341
Query 1306 TCAGAGGCGAGAACAAAAGC-CGTGAATGCTTTAGCAAAG---GATGTCAGATACAGGAA 1361
|| |||| || |||||| || | | | |||||||||||| |||||||| || |||||
Sbjct 1342 TCTGAGGAGAAAACAAAGGCTCTT-ACTGCTTTAGCAAACTCAGATGTCAGGTATAGGAA 1400
Query 1362 GTACTCCATTGAGGAGATTGAGGATGCAACAGAGTTCTTT-GATGATAAATACAAGATCG 1420
|||||||||||| ||||||||| |||||| ||||| ||| | ||| ||||| ||||| |
Sbjct 1401 GTACTCCATTGAAGAGATTGAGCTTGCAACCGAGTT-TTTCGCTGAGAAATATAAGATTG 1459
Query 1421 GAGAAGGCAGTTATGGACCTGTCTACAAGTGTTATCTGGATCACACACCTGTGGCTGTCA 1480
||||||| ||||||||||||||||||| |||||||| ||||| ||||| |||||||| |
Sbjct 1460 GAGAAGGTGGTTATGGACCTGTCTACAAATGTTATCTTGATCATACACCAGTGGCTGTTA 1519
Query 1481 AAGCT-TTGCGCCCAGATGCAGCTCAAGGCAGGTCACAGTTTCAGA-AAGAGGTTGAAGT 1538
||| | || || || |||||||||||||| || || ||||| || | |||||||||| ||
Sbjct 1520 AAGTTCTT-CGTCCTGATGCAGCTCAAGGAAGATCTCAGTTCCA-ACAAGAGGTTGAGGT 1577
Query 1539 GTT-ATGCAGTATAAGGCACCCTAACATGGTTCTTCTGCTTGGAGCATGCCCAGAATGTG 1597
|| | || | || ||||| |||||||||||||| || ||||| |||||||| |||||||
Sbjct 1578 ATTGA-GCTGCATTAGGCATCCTAACATGGTTCTACTTCTTGGGGCATGCCCGGAATGTG 1636
Query 1598 GATGCTTAGTGTATGAGTTCATGGCTAATGGGAGCTTAGAAGACCGTCTTTTCAGACAAG 1657
|||| ||||| || ||||||||||| || || ||||||||||| |||||||||||| ||
Sbjct 1637 GATGTTTAGTCTACGAGTTCATGGCCAACGGAAGCTTAGAAGATCGTCTTTTCAGATTAG 1696
Query 1658 GAGACAGCCCGGCTCTCTCTTGGCAAACAAGATTCAGAATTGCTGCAGAGATCGGCACTG 1717
|| ||||||| ||||||| ||||| | || |||||||||||||| ||||| |||||||
Sbjct 1697 GAAACAGCCCACCTCTCTCGTGGCAGATGAGGTTCAGAATTGCTGCTGAGATTGGCACTG 1756
Query 1718 TACTGTTGTTCCTCCACCAGACTAAACCAGAACCACTGGTTCACCGTGATCTCAAACCAG 1777
|||||||||| | |||||| ||||||| || || || ||||||||||||||||||||||
Sbjct 1757 GACTGTTGTTCTTGCACCAGGCTAAACCTGAGCCTCTAGTTCACCGTGATCTCAAACCAG 1816
Query 1778 CAAACATCTTACTAGACCGCAACTTTGTCAGCAAGCTTGCTGATGTTGGCTTGGCTAGGC 1837
||||||||| |||||||| ||||| ||||||||| || |||||||||| || || ||||
Sbjct 1817 GAAACATCTTGCTAGACCGTAACTTCGTCAGCAAGATTTCTGATGTTGGTTTAGCCAGGC 1876
Query 1838 TGGTCCCTCCATCCGTTGCAAACACCGTGACGCAATACC-ACATGACATCAACTGCTGGC 1896
| ||||||||||| |||||| |||| ||||| || |||| | ||||| ||||| || |||
Sbjct 1877 TAGTCCCTCCATCGGTTGCAGACACGGTGACACAGTACCGA-ATGACTTCAACCGCGGGC 1935
Query 1897 ACGTTTTGCTACATCGACCCAGAGTATCAGCAGACGGGTATGCTGGGTGTGAAATCTGAC 1956
||||| || |||||||| |||||||||||||| || || ||| ||||||||||||| |||
Sbjct 1936 ACGTTCTGTTACATCGATCCAGAGTATCAGCAAACAGGAATGTTGGGTGTGAAATCCGAC 1995
Query 1957 ATTTATTCGCTTGGTATTATGTTTCTGCAGTTAATAACAGGAAAACCACCTATGGGTCTA 2016
||||| || || || ||||||||||||||||| ||||||| ||||||||| ||||| |||
Sbjct 1996 ATTTACTCACTCGGCATTATGTTTCTGCAGTTGATAACAGCAAAACCACCAATGGGGCTA 2055
Query 2017 ACCCATTATGTCGAAAGAGCTCTCGAGAAGGGTAA-TTTGAAAGATTTGCTCGATCCAGC 2075
|||||||||||||| ||||| |||||||| || || |||| ||||| || ||||||||
Sbjct 2056 ACCCATTATGTCGAGAGAGCACTCGAGAAAGG-AACTTTGGCTGATTTACTTGATCCAGC 2114
Query 2076 TGTGTCTGATTGGCCTGTTGAAGACACCACA-GAGTTTGCCAAGTTGGCTCTCAAGTGCG 2134
||| ||||||||||| | |||||||| | | |||||||| || || ||||| || || |
Sbjct 2115 TGTTTCTGATTGGCCAATGGAAGACAC-AGAAGAGTTTGCTAAATTAGCTCTTAAATGTG 2173
Query 2135 CAGAGATAAGGCGAAAAGACAGACCTGATCTTTCCAAAGTTATATTGCCAGAGCTCAACA 2194
||||| ||||| |||||||||||||||||||| | ||||| |||||||| ||||| ||||
Sbjct 2174 CAGAGCTAAGGAGAAAAGACAGACCTGATCTTGCTAAAGTCATATTGCCTGAGCTAAACA 2233
Query 2195 GATTAAGAGTACTTGCTGAAGAATCAACACAGGCTGCAGTAGTCA 2239
|||||||| ||||||||| |||||| |||| ||| ||||||||
Sbjct 2234 GATTAAGAACACTTGCTGACGAATCATCACATTCTGTAGTAGTCA 2278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93054468535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5