BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31240.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888994 jgi|Araly1|888994|Al_scaffold_0007_980 1879 0.0
Ahg328596 jgi|Araly1|328596|fgenesh1_pm.C_scaffold_7000823 665 0.0
> Ahg888994 jgi|Araly1|888994|Al_scaffold_0007_980
Length=1179
Score = 1879 bits (1017), Expect = 0.0
Identities = 1126/1180 (95%), Gaps = 2/1180 (0%)
Strand=Plus/Plus
Query 348 ATGGCAGTATCAGCTGATTACCAAGTTAAGTTTCCTGAAAGTGGTGATCTCTACTCTATA 407
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAGTATCAACTGATTACCAAGTTAAGTTTCCTGAAAGTGGTGATCTTTACTCTATA 60
Query 408 CTAGCAGCTGAAGGGATTGAGTTTCTTTTGTCGCATAGTGGAGAGGTGCCGTTGGAATAT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGCAGCTGAAGGGATTGAGTTTCTTTTGTCGCATAGTGGAGAGGTGCCGTTGGAATAT 120
Query 468 ATTCATGGTAAGACGATTTGTCTCTTCTTCTCTGCAATCTGGTGCAGGCCCTGCAAGGAC 527
|||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 121 ATTCATGGGAAGACGATTTGTCTCTTCTTCTCTGCAAACTGGTGCAGGCCTTGCAAGGAC 180
Query 528 TTCACTCCAGAGCTGATAAAACTCTACGAAAATCTTCAGAA-CCGAGGAGAAGAACTCGA 586
||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||
Sbjct 181 TTCACTCCAGAGCTGGTAAAACTCTACGAAAATCTTCA-AACCCGAGGAGAAGAACTCGA 239
Query 587 GATCATCTTTGTCTCATTTGATCATGATATGACTTCATTCTATGAACATTTCTGGTGCAT 646
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 GATCATCTTTGTCTCATTTGATCATGATATGACTTTATTCTATGAACATTTCTGGTGCAT 299
Query 647 GCCATGGCTTGCAGTTCCCTTCAATTTAAGCCTACTCAACAAATTAAGGGACAAGTACGG 706
||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 300 GCCATGGCTCGCAGTCCCCTTCAATTTAAACCTACTCAACAAATTAAGGGACAAGTACAG 359
Query 707 AATTTCTCGTATCCCGTCACTGGTTCCTCTATATTCAGATGAAATCTCAGTCGCTGAAGA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATTTCTCGTATCCCGTCACTGGTTCCTCTATATTCAGATGAAATCTCAGTCGCTGAAGA 419
Query 767 TGTAATTGGTCTAATTGAAGACTATGGTTCTGAAGCCTTTCCTTTCACTAAAAAGCGAAA 826
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||
Sbjct 420 TGTAATTGGTCTAATTGAAGACTATGGTCCTGAAGCATTTCCTTTCACTAAAAAGAGAAA 479
Query 827 AGAAGAACTCAAAGCCATCGATGACTCCAAACGCCTTGGAGGACAGTTGGAGAAACTCCT 886
|| |||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 480 AGCAGAACTCAAAGCTATCGATGACTCCAAACGCATTGGCGGACAATTGGAGAAACTCCT 539
Query 887 TACTCACGAGTCCCGAAATTACGTTGTTGCCAGAAATGGAAGCAAGGTGCTAGTTTCTAA 946
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TACTCATGAGTCCCGAAATTACGTTGTTGCCAGAAATGGAAGTAAGGTGCTAGTTTCTAA 599
Query 947 ACTTGTGGGAAAGACCATAGGGTTGTACTTTGGTGCACACTGGTGTCCGCCTTTCCGATC 1006
||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 600 ACTAGTGGGCAAGACTATAGGGTTGTACTTTGGTGCCCACTGGTGTCCGCCTTTTCGATC 659
Query 1007 TTTCACTTCTCAACTCGTAGATGTGTACAATGAGCTGGCGACTACAGATAAAGGCTCCTT 1066
|||||||||||| ||| | ||||||||||||||||| ||||| | |||||||||||||||
Sbjct 660 TTTCACTTCTCAGCTCCTGGATGTGTACAATGAGCTCGCGACCAGAGATAAAGGCTCCTT 719
Query 1067 TGAAGTCATCTTAATTTCAACAGACAGAGACTCAAGAGAGTTTAACATCAACATGACCAA 1126
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGAAGTCATCTTAGTTTCAACAGACAGAGACTCAAGAGAGTTTAACATCAACATGACCAA 779
Query 1127 CATGCCATGGCTTGCAATACCTTATGAGGACAGAACAAGACAAGATCTTTGTAGAATCTT 1186
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 CATGCCATGGCTTGCAATACCTTATGAGGACAGAACAAGACAAGACCTTTGTAGAATCTT 839
Query 1187 CAACGTCAAACTCATACCTGCATTGGTCATCATAGGACCCGAAGAGAAAACAGTGACCAC 1246
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 CAGCATCAAACTCATACCTGCATTGGTCATCATAGGACCGGAAGAGAAAACAGTGACCAC 899
Query 1247 AAACGCGAGAGAGATGGTATCATTGTATGGATCAAGGAGTTTTCCGTTCACGGAATCAAG 1306
|||||| |||||||||||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 900 AAACGCAAGAGAGATGGTATCGTTGTATGGATCAAGGAGTTTCCCATTCACAGAATCAAG 959
Query 1307 GATTGTTGAGTTAAAAGCTTGTTTGAAGAAGGAAGGTGATTCACTTCCAAGGAAAGTGAA 1366
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 GATTGTTGAGTTAAAAGCTTGTTTGAAGAAAGAAGGTGATTCACTTCCAAGGAAAGTGAA 1019
Query 1367 AGATAACAAGCATGAACACGAGCTAAAACTGGATATGGCGAAAGCTTATGTGTGTGATTT 1426
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 GGATAAGAAGCATGAACATGAGCTAAAGCTGGATATGGCGAAAGCTTATGTGTGTGATTT 1079
Query 1427 CTGTAAGAAGCAAGGCAGGTTTTGGGCGTTTTCTTGCAATGCTTGTGATTATGATCTTCA 1486
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1080 CTGTAAGAAGCAAGGCAGGTTTTGGGCGTTTTCTTGCGATGCTTGCGATTATGATCTTCA 1139
Query 1487 TCCTACATGTGTGGAAGAAGAAGAAGCATTATTGGTTTAG 1526
||||||||||||||||||| |||| ||||| |||||||||
Sbjct 1140 TCCTACATGTGTGGAAGAACAAGACGCATTGTTGGTTTAG 1179
> Ahg328596 jgi|Araly1|328596|fgenesh1_pm.C_scaffold_7000823
Length=2799
Score = 665 bits (360), Expect = 0.0
Identities = 403/424 (95%), Gaps = 2/424 (0%)
Strand=Plus/Plus
Query 512 CAGGCCCTGCAAGGACTTCACTCCAGAGCTGATAAAACTCTACGAAAATCTTCAGAA-CC 570
|||||| |||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 2358 CAGGCCTTGCAAGGACTTCACTCCAGAGCTGGTAAAACTCTACGAAAATCTTCA-AACCC 2416
Query 571 GAGGAGAAGAACTCGAGATCATCTTTGTCTCATTTGATCATGATATGACTTCATTCTATG 630
|||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||
Sbjct 2417 GAGGAGAAGAACTCGAGATCATCTTTGTATCGTTTGATCATGATATGACTTTATTCTATG 2476
Query 631 AACATTTCTGGTGCATGCCATGGCTTGCAGTTCCCTTCAATTTAAGCCTACTCAACAAAT 690
||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||
Sbjct 2477 AACATTTCTGGTGCATGCCATGGCTCGCAGTCCCCTTCAATTTAAACCTACTCAACAAAT 2536
Query 691 TAAGGGACAAGTACGGAATTTCTCGTATCCCGTCACTGGTTCCTCTATATTCAGATGAAA 750
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2537 TAAGGGACAAGTACAGAATTTCTCGTATCCCGTCACTGGTTCCTCTATATTCAGATGAAA 2596
Query 751 TCTCAGTCGCTGAAGATGTAATTGGTCTAATTGAAGACTATGGTTCTGAAGCCTTTCCTT 810
||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 2597 TCTCAGTCGCTGAAGATGTAATTGGTCTAATTGAAGATTATGGTCCTGAAGCATTTCCTT 2656
Query 811 TCACTAAAAAGCGAAAAGAAGAACTCAAAGCCATCGATGACTCCAAACGCCTTGGAGGAC 870
||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct 2657 TCACTAAAAAGAGAAAAGAAGAACTCAAAGCTATCGATGACTCCAAACGCATTGGTGGAC 2716
Query 871 AGTTGGAGAAACTCCTTACTCACGAGTCCCGAAATTACGTTGTTGCCAGAAATGGAAGCA 930
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2717 AATTGGAGAAACTCCTTACTCATGAGTCCCGAAATTACGTTGTTGCCAGAAATGGAAGTA 2776
Query 931 AGGT 934
||||
Sbjct 2777 AGGT 2780
Score = 174 bits (94), Expect = 2e-42
Identities = 98/100 (98%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 355 TATCAGCTGATTACCAAGTTAAGTTTCCTGAAAGTGGTGATCTCTACTCTATACTAGCAG 414
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2180 TATCAACTGATTACCAAGTTAAGTTTCCTGAAAGTGGTGATCTTTACTCTATACTAGCAG 2239
Query 415 CTGAAGGGATTGAGTTTCTTTTGTCGCATAGTGGAGAGGT 454
||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 CTGAAGGGATTGAGTTTCTTTTGTCGCATAGTGGAGAGGT 2279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5