BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31250.1
Length=2307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328596 jgi|Araly1|328596|fgenesh1_pm.C_scaffold_7000823 2928 0.0
> Ahg328596 jgi|Araly1|328596|fgenesh1_pm.C_scaffold_7000823
Length=2799
Score = 2928 bits (1585), Expect = 0.0
Identities = 1906/2056 (93%), Gaps = 41/2056 (2%)
Strand=Plus/Plus
Query 1 ATGACCCGTGATGACAAATTCCCGATCGTATACTCTCTGTTATTGATCGTCTTGCTCTTC 60
||||||||||||||||| |||||||||||||||||||||||||| |||| | || |||||
Sbjct 1 ATGACCCGTGATGACAAGTTCCCGATCGTATACTCTCTGTTATTAATCGCCGTGTTCTTC 60
Query 61 GTTTCTCCTATCTACGGCGACGGTGATGCTGATGCTCTATTGAAGTTCAAGTCATCTCTC 120
| ||||||||||| | |||| | |||| ||||||||| |||||||||||||||||||||
Sbjct 61 GCTTCTCCTATCTCCAGCGAAGATGATTTTGATGCTCTGTTGAAGTTCAAGTCATCTCTC 120
Query 121 GTGAACGCCAGCTCGCTCGGTGGATGGGACTCTGGTGAGCCTCCTTGCTCCGGTGATAAA 180
|| |||| || | | ||||||||||||||||| || || |||||||| |||||||| |||
Sbjct 121 GTTAACGGCACCACCCTCGGTGGATGGGACTCCGGCGAACCTCCTTGTTCCGGTGAAAAA 180
Query 181 GGAAGTGACTCGAAATGGAAAGGAGTGATGTGTTCAAACGGCTCCGTTTTCGCTCTCCGT 240
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGAAGCGACTCGAAATGGAAAGGAGTGATGTGTTCTAACGGCTCCGTTTTCGCTCTCCGT 240
Query 241 CTAGAGAACATGAGCCTCTCCGGTGA-GCTTGATGTTCAAGCGCTCGGGTCCATCCGCGG 299
|| |||||||||||||||||||| | |||||| |||||||||||||||||||| |||||
Sbjct 241 CTCGAGAACATGAGCCTCTCCGG-CACGCTTGACGTTCAAGCGCTCGGGTCCATTCGCGG 299
Query 300 TCTCAAGAGTATCAGCTTTATGCGTAACCATTTCG-AGGGAAAGATCCCTCGTGGAATCG 358
||||| ||| ||||||||||||||||||||||||| |||| |||||||| |||||| ||
Sbjct 300 TCTCAGGAGCATCAGCTTTATGCGTAACCATTTCGAAGGG-AAGATCCCACGTGGACTCA 358
Query 359 ACGGGCTTGTTTCGTTGGCGCATCTTTACCTTGCGCATAACCAGTTTACCGGTGAGATAG 418
|||||||||| ||||||| ||||||||||||||||||||||| |||| | || |||||||
Sbjct 359 ACGGGCTTGTCTCGTTGGTGCATCTTTACCTTGCGCATAACCGGTTTTCAGGCGAGATAG 418
Query 419 ACGGTGATTTGTTCTCCGGGATGAAGGCTCTTCTGAAGGTTCATCTTGAAGGAAACCGGT 478
|||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| |
Sbjct 419 ACGGTGATTTGTTCGCCGGAATGAAGGCTCTTATGAAGGTTCATCTTGAAGGAAACCAAT 478
Query 479 TTTCCGGTGAGATTCCGGAGTCGTTAGGGAAATTGCCGAAGCTTACTGAGCTGAATCTTG 538
|||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct 479 TTTCCGGTAAGATTCCGGAGTCGTTGGGGAAATTGCCGAGGCTGACTGAGCTGAATCTTG 538
Query 539 AGGATAATATGTTCACCGGGAAA-ATACCGGCGTTTAAACAGAAGAATCTCGTCACCGTT 597
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 539 AGGATAATATGTTCACC-GGAAAGATACCGGCGTTTAAACAGAAGAATCTCGTTACCGTT 597
Query 598 AACGTTGCTAACAATCAGTTAGAGGGTCGAATTCCGTTAACTCTCGGCCTTATGAACATC 657
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 AACGTTGCTAATAATCAGTTAGAGGGTCGAATTCCGTTTACTCTCGGCCTTATGAACATC 657
Query 658 ACTTTCTTCTCAGGTAACAAGGGGCTGTGTGGAGCGCCATTGCTTCCGTGCAGATACACT 717
|||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 658 ACTTTCTTCTTAGGTAACAAGGGGCTATGTGGAGCGCCGTTGCTTCCGTGCAGATACACT 717
Query 718 CGTCCGCCGTTCTTCACCGTGTTTCTCCTTGCCCTCACCATCCTCGCCGTCGTAGTGCTC 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 CGTCCGCCGTTCTTCACCGTGTTTCTCCTTGCCCTCACCATCCTCGCCGTCGTAGTCCTC 777
Query 778 ATTACCGTCTTTCTTTCCGTTTGCATTCTCAGCCGCCGTCAAGGCAAAGGACAAGACCAA 837
||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 778 ATTACCGTCTTCCTTTCCGTTTGCATTCTCAGCCGCCGTCAAGCCAAAGGTCAAGACCAA 837
Query 838 ATCCAAAACCACGGCGTCGGCCATTTTCACGGACAAGTCTACGGACAACCCGAGCAACAA 897
| |||| ||||||| || || || || ||||||||||||||| |||||||||||
Sbjct 838 AGCCAAGGCCACGGCCACG----TT--CATGGCCAAGTCTACGGACAAACCGAGCAACAA 891
Query 898 CAACACAGTGAAAAGAGCTCACAGGACTCCAAGGTCTACAGAAAACTAGCTAATGAAACT 957
|| || |||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 892 CA-CA--GTGAGAAGAGCTCGCAGGACTCCAAAGTCTACAGAAAACTAGCTAATGAAACT 948
Query 958 GTGCAGCGAGATTCAACAGCAACATCAGGAGCTAT-ATCCGTGGGAGGTCTCTCTCCAGA 1016
||||||||||||||||| | |||||||||||| || ||| ||||||||||| ||||||||
Sbjct 949 GTGCAGCGAGATTCAACGGTAACATCAGGAGC-ATTATCAGTGGGAGGTCTGTCTCCAGA 1007
Query 1017 TGAAGACAAACGAGGAGATCAACGGAAGCTACATTTCGTTAGGAATGATCAGGAGAGGTT 1076
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1008 CGAAGACAAGCGAGGAGATCAACGGAAGCTACATTTCGTTAGGAATGATCAGGAGAGATT 1067
Query 1077 CACGCTTCAGGATATGCTCCGTGCATCGGCGGAGGTTCTCGGAAGCGGCGGATTTGGATC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1068 CACGCTTCAGGATATGCTCCGTGCATCGGCGGAGGTTCTCGGAAGCGGCGGGTTTGGATC 1127
Query 1137 TTCGTACAAAGCGGCTTTATCGAGTGGTCGTGCGGTGGTTGTGAAACGGTTTAGGTTTAT 1196
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1128 GTCGTACAAAGCGGCTTTATCGAGTGGTCGTGCGGTGGTTGTGAAGCGGTTTAGGTTTAT 1187
Query 1197 GAGTAATATCGGGAGAGAAGAGTTTTACGATCATATGAAGAAGATCGGACGATTGTCTCA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GAGTAATATCGGGAGAGAAGAGTTTTACGATCATATGAAGAAGATCGGACGATTGTCTCA 1247
Query 1257 CCCTAATCTCCTTCCGTTGATTGCATTCTATTACAGAAAAGAAGAGAAGCTTCTCGTTAC 1316
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1248 CGCTAATCTCCTTCCGTTGATCGCATTCTATTACAGAAAAGAAGAGAAGCTTCTCGTCAC 1307
Query 1317 CAATTACATTTCCAATGGAAGCCTCGCTAATCTCCTCCATGCTAAC---------C---G 1364
||||||||||||||||||||| ||||| ||||||||||||| ||| | |
Sbjct 1308 CAATTACATTTCCAATGGAAGTCTCGCAAATCTCCTCCATGGTAAAATTAAGGAACTTTG 1367
Query 1365 ---A--A---C-A-C-C-AGGTCAAGTGGTTTTGGATTGGCCGATTCGATTGAAGATTGT 1412
| | | | | | |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1368 TTCATCAAATCGAACACCAGGTCAAGTGGTTTTGGATTGGCCGATTAGATTAAAGATTGT 1427
Query 1413 AAGAGGAGTTACGAGAGGATTGGCTTATCTCTATAGAGTGTTCCCTGATTTGAATCTTCC 1472
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AAGAGGAGTTACGAGAGGTTTGGCTTATCTCTATAGAGTGTTCCCTGATTTGAATCTTCC 1487
Query 1473 TCATGGCCATCTCAAGTCTTCCAATGTGTTGCTTGATCCTAACTTCGAGCCTCTACTTAC 1532
|||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||
Sbjct 1488 TCATGGCCATCTCAAGTCTTCCAATGTGTTGCTTGACCCCAACTTCGAGCCGCTTCTAAC 1547
Query 1533 GGACTACGCTCTTGTCCCGGTTGTTAACAGAGATCAATCACAGCAGTTCATGGTGGCTTA 1592
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GGACTACGCTCTCGTCCCGGTTGTTAACAGAGATCAATCACAGCAGTTCATGGTGGCTTA 1607
Query 1593 CAAGGCACCTGAGTTCACTCAGCAGGATAGGACTTCGAGAAGATCAGATGTGTGGAGCCT 1652
|||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 1608 CAAGGCACCTGAGTTCACTCAGCAGGATCGGACTTCGAGAAGATCCGATGTCTGGAGCCT 1667
Query 1653 GGGAATCTTGATTCTTGAGATTCTGACAGGGAAGTTTCCGGCGAATTATCTCAGGCAAGG 1712
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1668 TGGAATCTTGATTCTTGAGATTCTGACAGGGAAGTTTCCGGCGAATTATCTCCGGCAAGG 1727
Query 1713 GAAAGGAGCTGATGATGAGTTAGCTGCTTGGGTTGAGTCTGTAGCGAGAACCGAGTGGAC 1772
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1728 GAAAGGAGCTGATGATGAGTTAGCTGCTTGGGTTGAGTCTGTAGCGAGAACAGAGTGGAC 1787
Query 1773 TGCTGATGTGTTTGATAAGGAGATGAAAGCAGGGAAAGAGCACGAAGCACAAATGTTGAA 1832
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1788 TGCTGATGTGTTTGATAAGGAGATGAAAGCAGGGAAAGAACACGAAGCACAAATGTTGAA 1847
Query 1833 GCTGCTTAAGATCGGGTTGAGATGTTGTGATTGGGATATTGAGAAGAGAATTGAGCTTCA 1892
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1848 GCTGCTCAAGATTGGGTTGAGATGTTGTGATTGGGACATTGAGAAGAGAATTGAGCTTCA 1907
Query 1893 TGAGGCTGTTGATCGAATAGAAGAGGTTGATAGAGATGCTGGTGGAGGTCAAGAGAGTGT 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 TGAGGCTGTTGATCGAATAGAAGAGGTTGATAGAGATGCTGGTGGAGGTCAAGAGAGTGT 1967
Query 1953 TCGATCTTCATACGTGACTGCTAGTGATGGTGATCATCGTTCTTCAAGAGCTATGACTGA 2012
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1968 TCGATCTTCATACGTGACTGCTAGTGATGATGATCATCGTTCTTCTAGAGCTATGACTGA 2027
Query 2013 GGAGTTCTCACTCATG 2028
||||||||| ||||||
Sbjct 2028 GGAGTTCTCGCTCATG 2043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86883848845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5