BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31250.1 Length=2307 Score E Sequences producing significant alignments: (Bits) Value Ahg328596 jgi|Araly1|328596|fgenesh1_pm.C_scaffold_7000823 2928 0.0 > Ahg328596 jgi|Araly1|328596|fgenesh1_pm.C_scaffold_7000823 Length=2799 Score = 2928 bits (1585), Expect = 0.0 Identities = 1906/2056 (93%), Gaps = 41/2056 (2%) Strand=Plus/Plus Query 1 ATGACCCGTGATGACAAATTCCCGATCGTATACTCTCTGTTATTGATCGTCTTGCTCTTC 60 ||||||||||||||||| |||||||||||||||||||||||||| |||| | || ||||| Sbjct 1 ATGACCCGTGATGACAAGTTCCCGATCGTATACTCTCTGTTATTAATCGCCGTGTTCTTC 60 Query 61 GTTTCTCCTATCTACGGCGACGGTGATGCTGATGCTCTATTGAAGTTCAAGTCATCTCTC 120 | ||||||||||| | |||| | |||| ||||||||| ||||||||||||||||||||| Sbjct 61 GCTTCTCCTATCTCCAGCGAAGATGATTTTGATGCTCTGTTGAAGTTCAAGTCATCTCTC 120 Query 121 GTGAACGCCAGCTCGCTCGGTGGATGGGACTCTGGTGAGCCTCCTTGCTCCGGTGATAAA 180 || |||| || | | ||||||||||||||||| || || |||||||| |||||||| ||| Sbjct 121 GTTAACGGCACCACCCTCGGTGGATGGGACTCCGGCGAACCTCCTTGTTCCGGTGAAAAA 180 Query 181 GGAAGTGACTCGAAATGGAAAGGAGTGATGTGTTCAAACGGCTCCGTTTTCGCTCTCCGT 240 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 GGAAGCGACTCGAAATGGAAAGGAGTGATGTGTTCTAACGGCTCCGTTTTCGCTCTCCGT 240 Query 241 CTAGAGAACATGAGCCTCTCCGGTGA-GCTTGATGTTCAAGCGCTCGGGTCCATCCGCGG 299 || |||||||||||||||||||| | |||||| |||||||||||||||||||| ||||| Sbjct 241 CTCGAGAACATGAGCCTCTCCGG-CACGCTTGACGTTCAAGCGCTCGGGTCCATTCGCGG 299 Query 300 TCTCAAGAGTATCAGCTTTATGCGTAACCATTTCG-AGGGAAAGATCCCTCGTGGAATCG 358 ||||| ||| ||||||||||||||||||||||||| |||| |||||||| |||||| || Sbjct 300 TCTCAGGAGCATCAGCTTTATGCGTAACCATTTCGAAGGG-AAGATCCCACGTGGACTCA 358 Query 359 ACGGGCTTGTTTCGTTGGCGCATCTTTACCTTGCGCATAACCAGTTTACCGGTGAGATAG 418 |||||||||| ||||||| ||||||||||||||||||||||| |||| | || ||||||| Sbjct 359 ACGGGCTTGTCTCGTTGGTGCATCTTTACCTTGCGCATAACCGGTTTTCAGGCGAGATAG 418 Query 419 ACGGTGATTTGTTCTCCGGGATGAAGGCTCTTCTGAAGGTTCATCTTGAAGGAAACCGGT 478 |||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| | Sbjct 419 ACGGTGATTTGTTCGCCGGAATGAAGGCTCTTATGAAGGTTCATCTTGAAGGAAACCAAT 478 Query 479 TTTCCGGTGAGATTCCGGAGTCGTTAGGGAAATTGCCGAAGCTTACTGAGCTGAATCTTG 538 |||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||| Sbjct 479 TTTCCGGTAAGATTCCGGAGTCGTTGGGGAAATTGCCGAGGCTGACTGAGCTGAATCTTG 538 Query 539 AGGATAATATGTTCACCGGGAAA-ATACCGGCGTTTAAACAGAAGAATCTCGTCACCGTT 597 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| Sbjct 539 AGGATAATATGTTCACC-GGAAAGATACCGGCGTTTAAACAGAAGAATCTCGTTACCGTT 597 Query 598 AACGTTGCTAACAATCAGTTAGAGGGTCGAATTCCGTTAACTCTCGGCCTTATGAACATC 657 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 598 AACGTTGCTAATAATCAGTTAGAGGGTCGAATTCCGTTTACTCTCGGCCTTATGAACATC 657 Query 658 ACTTTCTTCTCAGGTAACAAGGGGCTGTGTGGAGCGCCATTGCTTCCGTGCAGATACACT 717 |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 658 ACTTTCTTCTTAGGTAACAAGGGGCTATGTGGAGCGCCGTTGCTTCCGTGCAGATACACT 717 Query 718 CGTCCGCCGTTCTTCACCGTGTTTCTCCTTGCCCTCACCATCCTCGCCGTCGTAGTGCTC 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 718 CGTCCGCCGTTCTTCACCGTGTTTCTCCTTGCCCTCACCATCCTCGCCGTCGTAGTCCTC 777 Query 778 ATTACCGTCTTTCTTTCCGTTTGCATTCTCAGCCGCCGTCAAGGCAAAGGACAAGACCAA 837 ||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 778 ATTACCGTCTTCCTTTCCGTTTGCATTCTCAGCCGCCGTCAAGCCAAAGGTCAAGACCAA 837 Query 838 ATCCAAAACCACGGCGTCGGCCATTTTCACGGACAAGTCTACGGACAACCCGAGCAACAA 897 | |||| ||||||| || || || || ||||||||||||||| ||||||||||| Sbjct 838 AGCCAAGGCCACGGCCACG----TT--CATGGCCAAGTCTACGGACAAACCGAGCAACAA 891 Query 898 CAACACAGTGAAAAGAGCTCACAGGACTCCAAGGTCTACAGAAAACTAGCTAATGAAACT 957 || || |||| |||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 892 CA-CA--GTGAGAAGAGCTCGCAGGACTCCAAAGTCTACAGAAAACTAGCTAATGAAACT 948 Query 958 GTGCAGCGAGATTCAACAGCAACATCAGGAGCTAT-ATCCGTGGGAGGTCTCTCTCCAGA 1016 ||||||||||||||||| | |||||||||||| || ||| ||||||||||| |||||||| Sbjct 949 GTGCAGCGAGATTCAACGGTAACATCAGGAGC-ATTATCAGTGGGAGGTCTGTCTCCAGA 1007 Query 1017 TGAAGACAAACGAGGAGATCAACGGAAGCTACATTTCGTTAGGAATGATCAGGAGAGGTT 1076 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1008 CGAAGACAAGCGAGGAGATCAACGGAAGCTACATTTCGTTAGGAATGATCAGGAGAGATT 1067 Query 1077 CACGCTTCAGGATATGCTCCGTGCATCGGCGGAGGTTCTCGGAAGCGGCGGATTTGGATC 1136 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1068 CACGCTTCAGGATATGCTCCGTGCATCGGCGGAGGTTCTCGGAAGCGGCGGGTTTGGATC 1127 Query 1137 TTCGTACAAAGCGGCTTTATCGAGTGGTCGTGCGGTGGTTGTGAAACGGTTTAGGTTTAT 1196 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1128 GTCGTACAAAGCGGCTTTATCGAGTGGTCGTGCGGTGGTTGTGAAGCGGTTTAGGTTTAT 1187 Query 1197 GAGTAATATCGGGAGAGAAGAGTTTTACGATCATATGAAGAAGATCGGACGATTGTCTCA 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1188 GAGTAATATCGGGAGAGAAGAGTTTTACGATCATATGAAGAAGATCGGACGATTGTCTCA 1247 Query 1257 CCCTAATCTCCTTCCGTTGATTGCATTCTATTACAGAAAAGAAGAGAAGCTTCTCGTTAC 1316 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1248 CGCTAATCTCCTTCCGTTGATCGCATTCTATTACAGAAAAGAAGAGAAGCTTCTCGTCAC 1307 Query 1317 CAATTACATTTCCAATGGAAGCCTCGCTAATCTCCTCCATGCTAAC---------C---G 1364 ||||||||||||||||||||| ||||| ||||||||||||| ||| | | Sbjct 1308 CAATTACATTTCCAATGGAAGTCTCGCAAATCTCCTCCATGGTAAAATTAAGGAACTTTG 1367 Query 1365 ---A--A---C-A-C-C-AGGTCAAGTGGTTTTGGATTGGCCGATTCGATTGAAGATTGT 1412 | | | | | | |||||||||||||||||||||||||||| |||| |||||||| Sbjct 1368 TTCATCAAATCGAACACCAGGTCAAGTGGTTTTGGATTGGCCGATTAGATTAAAGATTGT 1427 Query 1413 AAGAGGAGTTACGAGAGGATTGGCTTATCTCTATAGAGTGTTCCCTGATTTGAATCTTCC 1472 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1428 AAGAGGAGTTACGAGAGGTTTGGCTTATCTCTATAGAGTGTTCCCTGATTTGAATCTTCC 1487 Query 1473 TCATGGCCATCTCAAGTCTTCCAATGTGTTGCTTGATCCTAACTTCGAGCCTCTACTTAC 1532 |||||||||||||||||||||||||||||||||||| || ||||||||||| || || || Sbjct 1488 TCATGGCCATCTCAAGTCTTCCAATGTGTTGCTTGACCCCAACTTCGAGCCGCTTCTAAC 1547 Query 1533 GGACTACGCTCTTGTCCCGGTTGTTAACAGAGATCAATCACAGCAGTTCATGGTGGCTTA 1592 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1548 GGACTACGCTCTCGTCCCGGTTGTTAACAGAGATCAATCACAGCAGTTCATGGTGGCTTA 1607 Query 1593 CAAGGCACCTGAGTTCACTCAGCAGGATAGGACTTCGAGAAGATCAGATGTGTGGAGCCT 1652 |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| Sbjct 1608 CAAGGCACCTGAGTTCACTCAGCAGGATCGGACTTCGAGAAGATCCGATGTCTGGAGCCT 1667 Query 1653 GGGAATCTTGATTCTTGAGATTCTGACAGGGAAGTTTCCGGCGAATTATCTCAGGCAAGG 1712 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1668 TGGAATCTTGATTCTTGAGATTCTGACAGGGAAGTTTCCGGCGAATTATCTCCGGCAAGG 1727 Query 1713 GAAAGGAGCTGATGATGAGTTAGCTGCTTGGGTTGAGTCTGTAGCGAGAACCGAGTGGAC 1772 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1728 GAAAGGAGCTGATGATGAGTTAGCTGCTTGGGTTGAGTCTGTAGCGAGAACAGAGTGGAC 1787 Query 1773 TGCTGATGTGTTTGATAAGGAGATGAAAGCAGGGAAAGAGCACGAAGCACAAATGTTGAA 1832 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1788 TGCTGATGTGTTTGATAAGGAGATGAAAGCAGGGAAAGAACACGAAGCACAAATGTTGAA 1847 Query 1833 GCTGCTTAAGATCGGGTTGAGATGTTGTGATTGGGATATTGAGAAGAGAATTGAGCTTCA 1892 |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1848 GCTGCTCAAGATTGGGTTGAGATGTTGTGATTGGGACATTGAGAAGAGAATTGAGCTTCA 1907 Query 1893 TGAGGCTGTTGATCGAATAGAAGAGGTTGATAGAGATGCTGGTGGAGGTCAAGAGAGTGT 1952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1908 TGAGGCTGTTGATCGAATAGAAGAGGTTGATAGAGATGCTGGTGGAGGTCAAGAGAGTGT 1967 Query 1953 TCGATCTTCATACGTGACTGCTAGTGATGGTGATCATCGTTCTTCAAGAGCTATGACTGA 2012 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1968 TCGATCTTCATACGTGACTGCTAGTGATGATGATCATCGTTCTTCTAGAGCTATGACTGA 2027 Query 2013 GGAGTTCTCACTCATG 2028 ||||||||| |||||| Sbjct 2028 GGAGTTCTCGCTCATG 2043 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86883848845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5