BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31270.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888992 jgi|Araly1|888992|Al_scaffold_0007_978 1247 0.0
> Ahg888992 jgi|Araly1|888992|Al_scaffold_0007_978
Length=894
Score = 1247 bits (675), Expect = 0.0
Identities = 824/893 (92%), Gaps = 22/893 (2%)
Strand=Plus/Plus
Query 93 ATGGAGGAAGGAACTTCAGGTTCACGGAGAACACGGTCTCAAGTTGCTCCAGAATGGGCA 152
||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1 ATGGAGGAAGGAACTTCGGGTTCACGGAGAACACGGTCTCAAGTCGCTCCGGATTGGGCA 60
Query 153 GTCAAAGATTGTCTAG-TCCTCGTGAATGAGATCGCTGCGGTTGAAGCCGATTGTTCGAA 211
|||||||| ||||| | | || ||||||||||||||||| || ||||| || ||||||||
Sbjct 61 GTCAAAGACTGTCT-GATACTTGTGAATGAGATCGCTGCTGTCGAAGCGGACTGTTCGAA 119
Query 212 TGCTTTATCTAGCTTCCAGAAATGGACAATGATCACAGAGAACTGCAACGCTTTGGATGT 271
||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 120 TGCTTTATCCAGCTTCCAGAAATGGACAATGATCTCAGAGAACTGTAACGCTTTGGATG- 178
Query 272 TA-GCAGAAATCTAAACCAATGCAGGAGGAAATGGGATTCTTTGATGTCTGATTACAATC 330
|| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 179 TACGCAGGAATCTAAACCAATGCAGGAGGAAATGGGATTCATTGGTGTCTGATTTCAATC 238
Query 331 AGATCAAGAAGTGGGAATCTCAGTACCGAGGCACTGGTCGTTCCTATTGGTCCCTGAGTA 390
|||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||
Sbjct 239 AGATCAAGCAGTGGGAATCCCAGTACCGAGGCAGTGGTCGTTCTTATTGGTCCCTGAGTA 298
Query 391 GTGACAAGAGGAAGTTACTTAATCTCCCGGGGGATATCGATATCGAGCTTTTTGAAGCCA 450
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 299 GTGACAAGAGGAAGTTACTGAATCTCCCGGGGAATATCGATATCGAGCTTTTTGAAGCCA 358
Query 451 TCAATGCGGTTGTGATGATCCAAGATGAAAAAGCTGGGACTGAATCTGATAGTGACCCTG 510
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 TCAGTGCTGTTGTGATGATCCAAGATGAAAAAGCTGGGACTGAATCTGATAGTGACCCGG 418
Query 511 AAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAGCTTTTGTAGGATCAAAAAGATCAA 570
||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 419 AAGCGCAAGACATTGTTGATGTCACTACTGAATTAGCTTTTGTAGGATCAAAAAGATCAA 478
Query 571 GACAGCGAACAATGGTCATGAAGGA------------GA---CAAAGAAAGAAGAGCCAC 615
||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 479 GACAGCGGACAATGGTCATGAAGGAAAACCCCCCACAGAAGACAAAGAAAGAAGAGCCAC 538
Query 616 GGACTAGCCGAGTTCAAGTAAACACTCGAGAGAAACCTATAACTACAAAAGCAACCCATC 675
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 GGAAAAGCCGAGTTCAAGTAAACACTCGAGAGAAACATATAACTACAAAAGCAACCCATC 598
Query 676 AGAACAAAACCATGGGAGAGAAGAAGCCGGTGGAAGATATGTCCACAGATGAAGAAGAAG 735
|||| |||||||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 599 AGAAAAAAACCATGGAAGAGAAGAAGCCGATGGAAGATATCTCCACAGATGAAGAAGAAG 658
Query 736 ATGA--AA-CAATGAACATAGAAGAGGATGTAGAAGTGATGGAAGCGAAGCTAAGTTATA 792
| || || ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 AAGAGGAAACAATGAACATAGAAGAGGAGGTAGAAGTGATGGAAGCGAAGCTAAGTTATA 718
Query 793 AAATTGACTTGATACATGCGATAGTCGGGAGAAATCTAGCAAAGGATAATGAAACAAAGG 852
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 719 AAATTGACTTGATACATGCGATAGTCGGGAGAAATCTAGCAAAAGATAATGAAACAAGGG 778
Query 853 ATGGTGTTAGTATGGACGACAAGTTGAAGTCTGTGAGACAGCAAGGAGACGAGCTCATCG 912
||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 ATGGTATTAGTACGGACGACAAGTTGAAGTTTGTGAGACAGCAAGGAGACGAGCTCATCG 838
Query 913 GTTGTCTGAGTGAAATTGTTAGTACCCTTAATAGGCTTCATGAAGTTCCACAA 965
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 GTTGTCTGAGTGAAATTGTTAGTACCCTTAATAGGCTTCGTGAAGTTCCACAA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5