BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31290.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491614 jgi|Araly1|491614|fgenesh2_kg.7__1047__AT4G31290.1 1871 0.0
> Ahg491614 jgi|Araly1|491614|fgenesh2_kg.7__1047__AT4G31290.1
Length=1241
Score = 1871 bits (1013), Expect = 0.0
Identities = 1175/1251 (94%), Gaps = 19/1251 (2%)
Strand=Plus/Plus
Query 12 aaaaaaaaaaaaaaaaCATGCGTGGCATGAACAATACGGTTCGGTCTCCATCTCTCTCTC 71
|||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 1 AAAAAAAAAAAAAAAACATGCGTGGCATGATC-ACAAGGTTCGGTCTCCATCTCTCTCTC 59
Query 72 TATAAATGCTCTTCTTCCCACACATCGCCTCCTCCTCATT--AAGATACATCTCgagaag 129
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 60 TATAAATGCTCTTCTTCCCACACATCGCCTCCTCCTCATTAAAAAATACATCTCGAGAAG 119
Query 130 cagagcagagagaaagagattccgagagagagagagaaggagggagagaaggagCTTAGT 189
||||||||||||||||||||| ||| |||||||||| ||||||||| |||||||| |||
Sbjct 120 CAGAGCAGAGAGAAAGAGATTTCGATTGAGAGAGAGAGGGAGGGAGA-AAGGAGCTAAGT 178
Query 190 GGTCTCATTACCATTACCAGCTCCATACGAACCGAAACGACGCCGTTCGCTCAACCCTTT 249
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 179 GGTCTCATTACCATTCCCAGCTCCATACGAACCGAAACGACGTCGTTCCCTCAACCC-TT 237
Query 250 TCTCTGCAATCTCTCTTCCTCCCACGAGTTTCTCAGCTTTTCTCGGATCATCTAATTAAG 309
||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 TCTCTGCAA--TCTC-TCCTCCCACGAGTTTCTCAGCTTTTCTCGGATTATCTAATTAAA 294
Query 310 AGAGGAGATCTTGTCTCACGGTGGGATTGATTTTTCTCTTC-ACGAAGATCGTGTTCCAG 368
||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 295 AGAGGAGATCTTGTCTCACGGTGGGATTGTTTTTTCTCTTCGA-AAAGATCGTGTTCCAG 353
Query 369 GCAATTAACTGCAGAAAATGGTGATGTGGGTCTTTGGCTATGGCTCTCTTGTGTGGAACC 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GCAATTAACTGCAGAAAATGGTGATGTGGGTCTTTGGCTATGGCTCTCTTGTGTGGAACC 413
Query 429 CAGGATTTCACTACGATGAGAAAGTGTTAGGTTTCATCAAGGGATATAAACGTGTCTTTG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CAGGATTTCACTACGATGAGAAAGTGTTAGGTTTCATCAAGGGATATAAACGTGTCTTTG 473
Query 489 ATCTTGCTTGCATTGATCATAGAGGTACACCAGAACACCCTGCAAGAACTTGCACCCTCG 548
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 474 ATCTTGCTTGCATTGACCATAGAGGTACACCAGAACATCCTGCAAGAACTTGCACCCTCG 533
Query 549 AGAAAGCTGAAGAAGCCATATGCTGGGGTACTGCATTCTGTGTCCGTGGAGGACCAGAAA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGAAAGCTGAAGAAGCCATATGCTGGGGTACTGCATTCTGTGTCCGTGGAGGACCAGAAA 593
Query 609 AAGAACGTCTGGCTATGGAGTACTTGGAACGTAGAGAGTGTGAATATGATCTCAAGACAA 668
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 594 AAGAACGTCTGGCTATGGAGTACTTGGAACGTCGAGAGTGTGAATATGATCTCAAGACAT 653
Query 669 GTGTAGACTTTTACAAGGAAGATGATCCTCTAAAGCCAGCTGTAACTGGAGTGATAGTAT 728
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 654 GTGTAGACTTTTACAAGGAAGATGATCCTCTGAAGCCAGCTGTAACTGGAGTGATAGTAT 713
Query 729 TCACTTCTACTCCTGACAAGGTCTCCAACAAGTATTATCTCGGACCTGCGCCATTAGAAG 788
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 714 TCACTTCTACTCCAGACAAGGTCTCCAACAAGTATTACCTCGGACCTGCGCCATTAGAAG 773
Query 789 ACATGGCAAGACAAATCGCGACAGCCAATGGACCATGTGGTAACAACAGAGATTATCTCT 848
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ACATGGCAAGACAAATTGCGACAGCCAATGGACCATGTGGTAACAACAGAGATTATCTCT 833
Query 849 TCCTGCTCGAGAAGGCAATGCACGACATTGGGCATGAGGAGGACTATGTTATAGAGCTGG 908
|| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 834 TCTTGCTCGAGAAGGCAATGCATGACATCGGGCATGAGGAGGACTATGTTATAGAGCTGG 893
Query 909 CAAACGAGGTGAGGAAGGTTCTGGCCGAGTCCTCGACTAAGAAGGTGACACCGGTGAAGG 968
|||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||
Sbjct 894 CAAACGAGGTGAGGAAGGTTCTCGCAGAGTCCACGACGAAGAAGGTGACACCGGTGAAGG 953
Query 969 AATCAAGAGCAAGCCGTGTAGCTAACAAGTCGAAGAACAATGTCCCCACGGCTCATCAGA 1028
|| ||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 954 AACCAAGAGCGAGCCGTGTAGCTAACAAGTCGAAGAGCAATAACCCCACGGCTTATCAGA 1013
Query 1029 TACTACCTCATCATCCAGAAGCTGTTGCCACTACAATATAACTCTTGTAGTTTTCTTCTT 1088
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1014 TACTTCCTCATCATCCAGAAGCTGTTGCCACTACAATATAGCTCTTGTAGTTTTCTTCTT 1073
Query 1089 AATTGGCTTTAGAGATGAGTGAAATCAGGTCt-tttttttAATAATAATAACAA-AGTAA 1146
||||||||||||||| ||||| ||||| |||| ||||||| | | ||| || | ||
Sbjct 1074 AATTGGCTTTAGAGACGAGTGCAATCAAGTCTATTTTTTTTTTTTTTTTAATAATAACAA 1133
Query 1147 -GTTTGTTTTCTGAGTAGAGAAGTGTAATCTTTGTGTGTTTCGAA-CTTTGTTGTCTTGT 1204
||||||||||| |||||||||||||||||||||||||||| ||| || | |||||||
Sbjct 1134 AGTTTGTTTTCTTAGTAGAGAAGTGTAATCTTTGTGTGTTT-GAAACTCTC--GTCTTGT 1190
Query 1205 GTGTTGTCCTAACGAGTGCCTACTT--GTGCACCTTTTGAAGAAGATTAAA 1253
||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1191 GTGTTGTCCTAACGAGTGCCTTGTTTTGTGCACCTTTTGAAGAAAATTAAA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5