BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31310.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491611 jgi|Araly1|491611|fgenesh2_kg.7__1044__AT4G31310.1 865 0.0
Ahg896836 jgi|Araly1|896836|Al_scaffold_0005_802 115 5e-25
Ahg936693 jgi|Araly1|936693|scaffold_500884.1 97.1 2e-19
> Ahg491611 jgi|Araly1|491611|fgenesh2_kg.7__1044__AT4G31310.1
Length=690
Score = 865 bits (468), Expect = 0.0
Identities = 563/608 (93%), Gaps = 9/608 (1%)
Strand=Plus/Plus
Query 1 ATGTTGTCAGGGAAAGCTGCTTACGATCTCTTTGTCTATGGCAGTCTCCAGGAACCCGAA 60
||||||||| ||||||||| | | ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTTGTCAAGGAAAGCTGGTCATGATCTCTTTGTCTATGGCAGTCTCCAGGAGCCCGAA 60
Query 61 GTCGTATACGTGCTTCTTAATCGCGTCCCTGACCATGTCTCCGCCGTACTCTCCGGCTTT 120
||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 61 GTCGTTTACGTGCTTCTTAATCGCGTCCCTGACCGTGTCTCCGCCGTCCTCTCCGGCTTT 120
Query 121 CACAGGTTTAGACTCAAAGGCCGTGTCTATCCAACAATTCTACCGGACGGTACCGGAAAA 180
|||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||| ||
Sbjct 121 CACAGGTTTAAACTCAAAGGTCGTGTTTATCCAACAATTCTACCAGACGGTACCGGAGAA 180
Query 181 GTCAACGGAAAGGTGCTAAAGGGCATAACAGATGATGAACTGAAGA-TGTTAGATGAGTT 239
|||| |||||||||||| |||| |||||||||||||||||||| | |||||||||||||
Sbjct 181 GTCACCGGAAAGGTGCTTGAGGGAATAACAGATGATGAACTGAA-ATTGTTAGATGAGTT 239
Query 240 TGAAGATGTTGAATATGACAGAAAGACTGTTGAAGTAATGCTGACGGATACTTCAGAGAA 299
||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 240 TGAGGATGTTGAATATGACAGAAAGGCTGTTGAAGTGGTGCTGACGGATACTTCAGAGAA 299
Query 300 GCTGCAAGTCGAAACATATGTATGGAAGAACAAAGATGATCCGGATCTTTATGGAGAATG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTGCAAGTCGAAACATATGTATGGAAGAACAAAGATGATCCGGATCTTTATGGAGAATG 359
Query 360 GGATTTCGAGGAATGGAGACAACATGACAAGGAAGATTTCGTAACAGCGACCAAGAAGTT 419
||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 360 GGATTTCGAGGAATGGAAACGACATGACAAGGAAGATTTCGTAACAGCGACCAAGAAATT 419
Query 420 TCTGGAAAATAGGAGATTACCAGAAGCAAAGACGAGGATGGACACATTCAAAACATTCTT 479
||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 420 TCTGGAAGATAGGAGATTACCAGAAGCTAAGACGAGGATCGACACATTCAAAACATTCTT 479
Query 480 TAAGCAGGATCTTGAGAATGGGAAACCTCTGGACTCTTGATGATACTTGCACTTATACTA 539
|||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||
Sbjct 480 TAAGCAAGATCTTGAGAATGGGAAACCTCTGGATTCTTGATGATTCTTGCACTTATT-TA 538
Query 540 GAG-TGACTG-CTATTGCTTCACTTGAAATAAGACTTGTGGAACAATGCTTCTTGGCATG 597
| | | | | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 AAAATAAAAGAC-ATTGCTTCACTTGAAATAAGACTTGTGGAACAATGCTTCTTGGC-T- 595
Query 598 TTT-TGAA 604
||| ||||
Sbjct 596 TTTGTGAA 603
> Ahg896836 jgi|Araly1|896836|Al_scaffold_0005_802
Length=510
Score = 115 bits (62), Expect = 5e-25
Identities = 108/130 (83%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 249 TGAATATGACAGAAAGACTGTTGAAGTAATGCTGACGGATACTTCAGAGAAGCTGCAAGT 308
|||||||| ||| |||||||||||||| | |||| ||||||| |||||| ||||||
Sbjct 255 TGAATATGTCAGGAAGACTGTTGAAGTTGTTTTGACTGATACTTTGGAGAAGAAGCAAGT 314
Query 309 CGAAAC-ATATGTAT-GGAAGAACAAAGATGATCCGGATCTTTATGGAGAATGGGATTTC 366
||||| || ||||| || | ||||| |||||||| || | ||||||||||||||||||
Sbjct 315 TGAAACAAT-TGTATGGGCA-AACAAGGATGATCCTAATATGTATGGAGAATGGGATTTC 372
Query 367 GAGGAATGGA 376
||||||||||
Sbjct 373 GAGGAATGGA 382
> Ahg936693 jgi|Araly1|936693|scaffold_500884.1
Length=542
Score = 97.1 bits (52), Expect = 2e-19
Identities = 237/323 (73%), Gaps = 26/323 (8%)
Strand=Plus/Plus
Query 69 CGTGCTTCTTAATCGCGTCC-CTGAC-CATGTCTCCGCCGTACTCTC-CGGCTTTCACAG 125
|||| | ||| ||||| || | ||| || ||| ||||||| || || ||| ||||||
Sbjct 92 CGTGATCCTTGATCGC-ACCGCCGACACA-GTCCCCGCCGTTCT-TCATAGCTATCACAG 148
Query 126 GTTTAGACTCAAAGGCCGTGT-C-TATCCAACAATTCTACCGGACGGTA-CCGGAAAAGT 182
| || ||||||||| | | | | |||||| ||| | || | | | | | ||||||||
Sbjct 149 ATATAAACTCAAAGGAC-T-TCCATATCCATGTATTGTTCC-GTCTGAATCAGGAAAAGT 205
Query 183 CAACGGAAAGGTGCTAAAGGGCA-TAACAGATGATGAACTGAA-GATGTTAGATGAGTTT 240
|||||||||||| ||| || | | | |||| ||| | || || || |||| | ||
Sbjct 206 CAACGGAAAGGTAATAACTGG-AGTGTCGGATGCTGAGTTAAATAAT-TTCGATGTGATT 263
Query 241 GAAGATGTTGAATATGACAGA-AAGACTGTTGAAGTAATGCT--G-ACGGATACTTCAGA 296
|||| | ||| ||||| ||| | || |||||||| || | | | ||||| ||| ||
Sbjct 264 GAAGGTAATGATTATGAGAGAGTA-ACAGTTGAAGT--TG-TAAGAATGGATAATTCTGA 319
Query 297 GAAGCTGCAAGTCGAAACATATGTATGGAAGAACAAAGATGATCC-GGATCTTTATGGAG 355
|||| || |||| ||||| ||||| ||| || ||||||||||| || | |||||||
Sbjct 320 GAAGATGAAAGTTGAAACTTATGTTTGGGTTAATAAAGATGATCCTAGA-ATGTATGGAG 378
Query 356 AATGGGATTTCGAGGAATGGAGA 378
|||||||||||||||||||||||
Sbjct 379 AATGGGATTTCGAGGAATGGAGA 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5