BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G31320.1 Length=570 Score E Sequences producing significant alignments: (Bits) Value Ahg491610 jgi|Araly1|491610|fgenesh2_kg.7__1043__AT4G31320.1 937 0.0 > Ahg491610 jgi|Araly1|491610|fgenesh2_kg.7__1043__AT4G31320.1 Length=570 Score = 937 bits (507), Expect = 0.0 Identities = 550/571 (96%), Gaps = 2/571 (0%) Strand=Plus/Plus Query 1 ATGGAGGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAG 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAAGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAG 60 Query 61 AAATGGCGAAAAGTTGCACACGCATcaaaacaagccaacaacaacaagatcgacaacgta 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 AAATGGCGAAAAGTTGCACACGCATCAAAACAAGCCAACAACAACAAGATCGACAGCGTA 120 Query 121 gatgacagcaacaacaacatcagcatcaacatcaacaacaa-TGGAAGTGGAAGTGGAAG 179 ||||||| |||||||||||||| ||| |||| ||| || |||||||||||||||||| Sbjct 121 GATGACAACAACAACAACATCAACATGAACAACAATGG-AAGTGGAAGTGGAAGTGGAAG 179 Query 180 TGGAAGCAAGAGCATCAAGTTTCTGAAGAGAACACTATCCTTCACAGACACAACAGCTAT 239 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 180 TGGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTATCCTTCACAGACACAACAGCTGT 239 Query 240 TCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAAC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAAC 299 Query 300 AGAGTACCTTAGCCACCAAGCTTTCCATGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGG 359 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 AGAGTACCTTAGCCACCAAGCTTTCCACGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGG 359 Query 360 GTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTGCTGTGTTCGAGAGCATTTT 419 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 360 GTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTTCCGTGTTCGAGAGCATTTT 419 Query 420 GAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGACCACTCAAGAGTGCAGATTCAA 479 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 420 GAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGAGCACTCAGGAGTGCAGATTCAA 479 Query 480 TGCCACAAGTGAGGAAGTGATGAGTTATCGTCATCCTTCGGATTGCCCGAGGACACCATC 539 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 480 TGCCACGAGTGAGGAAGTGATGAGTTATCGCCATCCTTCGGATTGCCCGAGGACACCATC 539 Query 540 TCACCAACCTCACAGCCCAATGTGCAGATAG 570 ||| ||||||||||||||||||||||||||| Sbjct 540 TCATCAACCTCACAGCCCAATGTGCAGATAG 570 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20832951594 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5