BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G31320.1

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491610 jgi|Araly1|491610|fgenesh2_kg.7__1043__AT4G31320.1         937    0.0  


> Ahg491610 jgi|Araly1|491610|fgenesh2_kg.7__1043__AT4G31320.1
Length=570

 Score =  937 bits (507),  Expect = 0.0
 Identities = 550/571 (96%), Gaps = 2/571 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAG  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGCCAAGAAGTCAAACAAAATCAGAGAGATCGTTAAGCTTCAACAGATCCTCAAG  60

Query  61   AAATGGCGAAAAGTTGCACACGCATcaaaacaagccaacaacaacaagatcgacaacgta  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  61   AAATGGCGAAAAGTTGCACACGCATCAAAACAAGCCAACAACAACAAGATCGACAGCGTA  120

Query  121  gatgacagcaacaacaacatcagcatcaacatcaacaacaa-TGGAAGTGGAAGTGGAAG  179
            ||||||| |||||||||||||| ||| |||| |||    || ||||||||||||||||||
Sbjct  121  GATGACAACAACAACAACATCAACATGAACAACAATGG-AAGTGGAAGTGGAAGTGGAAG  179

Query  180  TGGAAGCAAGAGCATCAAGTTTCTGAAGAGAACACTATCCTTCACAGACACAACAGCTAT  239
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  180  TGGAAGCAAGAGCATCAAGTTTCTGAAGAGGACACTATCCTTCACAGACACAACAGCTGT  239

Query  240  TCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAAC  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TCCTAAAGGCTACTTAGCTGTCTCGGTGGGGAAGGAGGAGAAAAGATACAAGATACCAAC  299

Query  300  AGAGTACCTTAGCCACCAAGCTTTCCATGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGG  359
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  300  AGAGTACCTTAGCCACCAAGCTTTCCACGTGCTGTTGCGTGAAGCAGAAGAAGAGTTTGG  359

Query  360  GTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTGCTGTGTTCGAGAGCATTTT  419
            |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct  360  GTTTGAACAAGCTGGTATCTTGAGGATTCCTTGTGAAGTTTCCGTGTTCGAGAGCATTTT  419

Query  420  GAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGACCACTCAAGAGTGCAGATTCAA  479
            |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct  420  GAAGATAATGGAGGACAACAAGAGTGATGCGTACCTGAGCACTCAGGAGTGCAGATTCAA  479

Query  480  TGCCACAAGTGAGGAAGTGATGAGTTATCGTCATCCTTCGGATTGCCCGAGGACACCATC  539
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  480  TGCCACGAGTGAGGAAGTGATGAGTTATCGCCATCCTTCGGATTGCCCGAGGACACCATC  539

Query  540  TCACCAACCTCACAGCCCAATGTGCAGATAG  570
            ||| |||||||||||||||||||||||||||
Sbjct  540  TCATCAACCTCACAGCCCAATGTGCAGATAG  570



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20832951594


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5