BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G31330.1

Length=1058
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491609 jgi|Araly1|491609|fgenesh2_kg.7__1042__AT4G31330.1        1260    0.0  


> Ahg491609 jgi|Araly1|491609|fgenesh2_kg.7__1042__AT4G31330.1
Length=944

 Score = 1260 bits (682),  Expect = 0.0
 Identities = 753/788 (96%), Gaps = 1/788 (0%)
 Strand=Plus/Plus

Query  55   AGAAATGGAATGGAGAGAATGTTATTTAGATGTGATATTGGTGCCGCTAGGGCTAATGGT  114
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    AGAAATGGAATGGAGAGAATGTTATTTAGATGTGATCTTGGTGCCGCTAGGGCTAATGGT  60

Query  115  GTATGCATCTTACCATGTTTACTTGTGGCATAAGTTACGAACACAGCCTCTCACCACTAT  174
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  61   GTATGCATCTTACCATGTTTACTTGTGGCATAAGTTACGTACACAGCCTCTCACCACTAT  120

Query  175  CATCGGCACTAACGCTAGAGCTCGCCGATTCTGGGTCGCTTCCATCATCAAGGACAACGA  234
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  121  CATCGGCACTAACGCTAGAGCTCGCCGTTTCTGGGTCGCTTCCATCATCAAGGACAACGA  180

Query  235  CAAGAAGAACATCTTGGCCGTTCAAACGCTTAGAAACTGCATAATGGGGTCGACTTTGAT  294
             ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  181  GAAGAAGAACATCTTGGCCGTTCAGACGCTTAGAAACTGCATAATGGGGTCGACTTTAAT  240

Query  295  GGCAACAACATCGATCCTCCTCTGCGCTGGTCTAGCTGCGGTTTTAAGCAGCACATATGC  354
            |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct  241  GGCAACAACATCGATCCTACTCTGCGCGGGTCTAGCTGCGGTTTTAAGCAGCACATATGC  300

Query  355  AGTGAAGAAGCCTCTAAACGACGCTGTTTTTGGAGCTCGCGGAGAGTTCATGGTGGCTCT  414
            ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  301  AGTAAAGAAGCCTCTAAACGACGCCGTTTTTGGAGCTCGCGGAGAGTTCATGGTGGCTCT  360

Query  415  CAAGTACGTCACGATACTCACCATATTCctcttctccttcttctctcactctctctcAAT  474
            ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct  361  CAAGTACGTCACGATCCTCACCATCTTCCTCTTCTCCTTCTTCTCCCACTCTCTCTCAAT  420

Query  475  TCGTTTCATCAACCAAGTTAACATCCTCATCAACACTCCTTTTCCTCCTGAGGAGTTGGA  534
            |||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct  421  TCGTTTCATCAACCAAGTCAACATCCTCATCAACACTCCTTTTTCTCCAGAGGAGTTGGA  480

Query  535  GGACGAGATGATGATGACCGCGGAGGAGTACGTGGCGGAGTTGCTAGAGAGAGGGTTTAT  594
            ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct  481  GGATGAGATGATGATGACGGCGGAGGAGTACGTGGCGGAGTTGCTAGAGAGAGGGTTTGT  540

Query  595  TTTGAATACTGTGGGGAATCGGTTGTTCTACGCGGCTTTGCCGTTGATGCTTTGGATATT  654
            |||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct  541  TTTGAATACTGTCGGGAATCGGTTGTTCTATGCGGCGTTGCCTTTGATGCTTTGGATATT  600

Query  655  TGGACCGGTGCTTGTGTTTTTGTGCTCGGTCGTGATGGTTCCTCTACTTTACAACCTCGA  714
            ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  601  TGGACCGGTGCTTGTGTTTTTGTGCTCGGTCGTGATGGTTCCTCTTCTTTATAACCTCGA  660

Query  715  TTTCTTCTTCTTCGGTAAAGAAAGAAGAAAACTTGATCAAAAGTCTAGTTTTGGATCTGT  774
            |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct  661  TTTCTTCTTCTTCGGTAAAGAAAGAAAAAAACTCGATCAAAAGTCTAGTTTTGGATCTGT  720

Query  775  GTAAAATCGAGTTCTGGTCAGTAGAACAAGTGATTTGTAATTAAGTGATATCATCGTCCT  834
            ||||||||||||| | |||||| ||||||||| || ||||||||||||||| ||||||||
Sbjct  721  GTAAAATCGAGTTTTCGTCAGTGGAACAAGTGCTT-GTAATTAAGTGATATTATCGTCCT  779

Query  835  CTTTGTTA  842
             || ||||
Sbjct  780  ATTGGTTA  787


 Score =  154 bits (83),  Expect = 1e-36
 Identities = 109/121 (90%), Gaps = 4/121 (3%)
 Strand=Plus/Plus

Query  941   aaaaaaaaTGTAATTAAATAACGCATTATAATTTTCATATATTAGGGTTTTTCGGCCGTA  1000
             ||||||||| | ||||||| | || |||||||| ||||| ||||||||||||||||||||
Sbjct  825   AAAAAAAATCTTATTAAATTATGCGTTATAATTATCATAGATTAGGGTTTTTCGGCCGTA  884

Query  1001  TGTATTTGGTGTGGTGTAATATA-T--GTCACGTTTTGGTTTATTGAGCGTTATTATTGG  1057
             ||||||| ||||| ||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct  885   TGTATTTTGTGTG-TGTAATATAATATGTCACGTTTTGGTTTATTGAGCGTTATTATTGG  943

Query  1058  C  1058
             |
Sbjct  944   C  944



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39380973261


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5