BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31340.1
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491608 jgi|Araly1|491608|fgenesh2_kg.7__1041__AT4G31340.2 2922 0.0
> Ahg491608 jgi|Araly1|491608|fgenesh2_kg.7__1041__AT4G31340.2
Length=1832
Score = 2922 bits (1582), Expect = 0.0
Identities = 1760/1843 (95%), Gaps = 24/1843 (1%)
Strand=Plus/Plus
Query 40 GTTAAGAAATTTCTACGGTCCATGGTCAAAAACACACCTTCAT---AA-ATATACAGAGA 95
|||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||
Sbjct 2 GTTAAGAAATTTCTACGGTCCATGGTCAAAAAAACACCTTCATAAAAATATATATAGAGA 61
Query 96 GATCGTGAGAGAGCAGAG-AGGAAACGTTTCTCTTGTTCGTTGGAATCTCCGTCCCTTTT 154
|||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 62 GATCGT--GAGTGCAGAGAAGGAAACGTTTCTCTTGTTTGTTGGAATCTCCGTCCCTTTT 119
Query 155 TGTTGATCGACGGTGGTGAATCTTAGACATGGCGGCTGCGAAGCTCGTCGCTTTGTTACT 214
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 120 CGTTGATCGACGGTGGTGAATC-TAGACATGGCGGCTGCGAAGCTCGTGGCTTTTTTACT 178
Query 215 TCTTGCCTTGCTTTTCACCACCAGCGTCTTCGCCGATGCTGATGAGCCGGAGGTTTCTGA 274
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 179 TCTTGCCTTGCTTTTCACCACCAGCGTCTTCGCCGATGCTGATGAGCCGGAGATTGCTGA 238
Query 275 GGCTGCCGGATCCGATGGCTCTTCCAAGATCCACCTGGATCAGCTTAATGCCAAGATCCG 334
| |||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 239 GTCTGCCGGATCCGATGGCTCTTCAAAGATCCAACTGGATCAGCTTACTGCCAAGATCCG 298
Query 335 TGCCCTAGAATCTCAAATCGATGAGAAAACCCGGGAAGTTCAGGGCAAAGACGAGGTAGT 394
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 299 TGCCCTAGAATCCCAAATCGATGAGAAAACCCGGGAAGTTCAGGGCAAAGACGAGTTAGT 358
Query 395 AGCAGAGAAGGAGAAACTACTCAAAGAAAGGGAAGACAAGATTGCTTCCTTGCAGACTGA 454
|||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||
Sbjct 359 AGCAGAGAAGGAGAAACTTCTCAAAGAAAAGGAAGACAAGATTTCTTCCTTGCAGACTGA 418
Query 455 AGTCTCATCACTACAGAAAAAGGGATCATCAGATTCTGCAAAACAGTTGGGAAAGGCTCA 514
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGTCTCATCACTACAAAAAAAGGGATCATCAGATTCTGCAAAACAGTTGGGAAAGGCTCA 478
Query 515 AGCACGAGCTGATGAATTAGAGAAGCAGGTTGAGGTTCTCAAGAACTTCTTGGAGCaaaa 574
||| ||||||| |||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 479 AGCGCGAGCTGCTGAATTGGAGAAGCAGGTAGAGGTACTCAAAAACTTCTTGGAGCAAAA 538
Query 575 aaaCAAGGAGAAAGATTCCACTGAAGCTCGGACTAATGAAGCTGAGAAAAAACTAAGGGA 634
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 AAACAAGGAGAAAGATTCCACTGAAGCTCGGACTAATGAAGCTGAGAAAAAACTAAATGA 598
Query 635 ACTTAACTCGAGCCTTGACAAACTTCAGAAGACAAATGAAGAGCAGAAGAACAAAATAGG 694
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACTAAACTCAAGCCTTGACAAACTTCAGAAGACAAATGAAGAGCAGAAGAACAAAATAGG 658
Query 695 AAAACTTGAACGTGCTATTAAGATAGCTGAGGAAGAAATGTTGAGGACAAAGCTCGAAGC 754
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 659 AAAACTTGAACGTGCTATTAAGATAGCTGAGGAAGAAATGTTGAGGACAAAGCTTGAGGC 718
Query 755 AACCACAAAGGCGAAGGAACTGCTAGAGGCTCATGGTTCGTGGCTTCCCCCTTGGCTTGC 814
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 AACCACAAAGGCTAAGGAACTGCTGGAGGCTCATGGTTCGTGGCTTCCCCCTTGGCTTGC 778
Query 815 TGTTCACTGGTTTAAATTTCAGACTTATACCGAGACACATTGGGAGGCCCATGGGAAACC 874
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 TGTTCACTGGTTTAAATTTCAGACTTATACTGAGACACATTGGGAGGCCCATGGGAAACC 838
Query 875 TGCTGTGGAGACAGTAATTCTAAAGGTGACGGAAGCAAAAGCTCAAGCTGAAAAGTGGGC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGCTGTGGAGACAGTAATTCTAAAGGTGACGGAAGCAAAAGCTCAAGCTGAAAAGTGGGC 898
Query 935 TGAACCACATGTCGAAAACGTTAAAACTAAATATATTCCAGCCATCAAGGAAACCGTTAC 994
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGAACCACATGTTGAAAACGTTAAAACTAAATATATTCCAGCCATCAAGGAAACCGTTAC 958
Query 995 TATACATGTTGAGCCACACTTCCGAACACTATCCATCAAAGCTAAAGAGGCTTACCATTC 1054
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 959 TACACATGTTGAGCCACACGTCCGAACACTATCCATCAAAGCTAAAGAGGCTTACCATGC 1018
Query 1055 ATCAAAGAGTGCTGTTTCCCCTCACATTGTCACGGTTCAAGAATTTGTAGACCCCTATTA 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATCAAAGAGTGCTGTTTCCCCTCACATTGTCACGGTTCAAGAATTTGTAGACCCCTATTA 1078
Query 1115 TCAGGAGGCCAAAAAGTTCAGCAAGCCATATGTCGACCAAGTGGCCACGACCACGAAACC 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCAGGAGGCCAAAAAGTTCAGCAAGCCATATGTCGACCAAGTGGCCACGACCACGAAACC 1138
Query 1175 ACATGTTGATAAAATGAAGGTTGCCATGAAACCTTACACAACCAAGGTGATCATCGTCTA 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACATGTTGATAAAATGAAGGTTGCCATGAAACCTTACACAACCAAGGTGATCATCGTCTA 1198
Query 1235 TACAGAGTTCCTTGAATCCGCCACAACTTATCACAATCAGGTCCAAGCCCATGTTGAACG 1294
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 1199 TACAGAGTTCCTTGAATCCGCCACAACTTATCACCATCAGGTCCAAGCCCATATCGAACG 1258
Query 1295 AAAACTGAAA-AGCCATGAGCTGACGGAGCCTTTTGCTACCAATGAGTTTGTTTGGTTTG 1353
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAAACTGAAAGA-CCATGAGCTGACGGAGCCTTTTGCTACCAATGAGTTTGTTTGGTTTG 1317
Query 1354 CGGCCTCTGCATTGTTGGTATTTCCCATCTTCGTTGCTTACAGAGTGCTCTCTTCTCTCT 1413
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1318 CGGCCTCTGCATTGTTGGTATTTCCCATCTTCGTTGCTTACAAAGTGCTCTGTTCTCTCT 1377
Query 1414 TCTG-CA-CA-AA-GACAAAGAAACCTGTTAAACACCCTCATCACCATGGTCGTCGTAAG 1469
|||| || || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TCTGGCAACACAAAGACAAAGAAACCTGTTAAACACCCTCATCACCATGGTCGTCGTAAG 1437
Query 1470 GCCAAAAGGGCTCACACTGACAAGTGATATTCATTGTTCCACGCTCTCAAAATAGTCGAG 1529
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GCCAAAAGGGGTCACACTGACAAGTGATATTCATTGTTCCACGCTCTCAAAATAGTCGAG 1497
Query 1530 GTCACGAGGTTAAAACGCCATTGTTGTTGGACTGTTCTAAAGTCAGCTAGCTCACCGGAC 1589
|||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||
Sbjct 1498 GTCACGAGGTTAAAACGCCATTGTCGTTGGACTGTTCTAAGGTCAG---G-TCACCGGAC 1553
Query 1590 AGGTTGCTTGTTGAATGAAGGGAAAGTCTCGAGTTGGTGTCTGATGGGTTTTTAGAGGCT 1649
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1554 AGGGTGCTTGTTGAATGAAGGGAAAGTCTCGAGTTGGTGTCTGATGGGTGTTTAGAGGCT 1613
Query 1650 CGTTGTGCACAAGTGTTGACTTCTTTCCTTTATTATTTTGTATTGTTTTGGACAATTTAT 1709
| |||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1614 CTTTGTGCACAATTATTGACTTCTTTCCTTTACTATATTGTATTGTTTTGGACAATTTAT 1673
Query 1710 TTCAGCATTTTTACACAGAAGATTAGACATTACTAGAGAAATTCTAGCAAAAGCTTGGTT 1769
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1674 TTCAGTATTTTTACACAGAAGATTAGACATTACTAGAGAAATTCTAGCAA---CTTGGTT 1730
Query 1770 GTATTTTAGTGTATTTTTCTATTTTACGTGGATATATATTGCGATATCTTTAATTTCATT 1829
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1731 GTATTTTAGTGTATTTTTCTATTTCACGTGGATATATATTGCGATATCTTTAATTTCATT 1790
Query 1830 CGAACTCTTT-CTTT-TGCAACTTATCTTTATGCTTAATTCAT 1870
|| | ||||| |||| | ||||||| ||||||||||| |||||
Sbjct 1791 CGCAGTCTTTTCTTTCT-CAACTTAACTTTATGCTTATTTCAT 1832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70809765455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5