BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31350.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328588 jgi|Araly1|328588|fgenesh1_pm.C_scaffold_7000815 1895 0.0
> Ahg328588 jgi|Araly1|328588|fgenesh1_pm.C_scaffold_7000815
Length=1131
Score = 1895 bits (1026), Expect = 0.0
Identities = 1098/1133 (97%), Gaps = 4/1133 (0%)
Strand=Plus/Plus
Query 329 ATGTCAGAGTCTCGTCAAAGGCCTCCTTTTAAGGGCCCGAGATGGATTATCACTTTGGTT 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAGAGTCTCGTCAAAGGCCTCCTTTTAAGGGCCCGAGATGGATTATCACTTTGGTT 60
Query 389 GTTCTGGTTACGGTTGTTGTCATTACCGCATTCATATATCCTCCGCGGAATTCTGTGGCT 448
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTCTGGTTACTGTTGTTGTCATCACCGCATTCATATATCCTCCGCGGAATTCTGTGGCT 120
Query 449 TGCTATATGTTTTCTGGTCCTGGATGTCCTTTATACCAGCAGTTTTTGTTTGTACC-TAC 507
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
Sbjct 121 TGCTATATGTTTTCTGGTCCTGGATGTCCATTATACCAACAGTTTTTGTTTGTACCGT-C 179
Query 508 TCGGGAATTGACTGACTCTGAAGCTGCTGCTCAAGTTGTCATGAATGAAATCATGAACCT 567
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 GAGGGAATTGACTGACTCTGAAGCTGCAGCTCAAGTTGTCATGAATGAAATCATGAACCT 239
Query 568 ACCTCAATCTAAGACAGCAAATCCCAAGTTAG-CTTTCATGTTCTTAACTCCAGGGACGC 626
|||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||
Sbjct 240 ACCTCAATCTAAGACAGCAAATCCCAAGATAGCCTTT-ATGTTCTTAACACCAGGGACGC 298
Query 627 TGCCTTTTGAGCCTCTCTGGGAAATGTTTTTCCGTGGTCATGAGAACAAATTTTCAGTTT 686
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 TACCTTTTGAGCCTCTGTGGGAAATGTTCTTCCGTGGTCATGAGAACAAATTTTCAGTTT 358
Query 687 ATGTGCATGCCTCAAAGAAAAGTCCTGTACATACAAGCAGCTATTTTGTTGGTCGAGATA 746
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGTGCACGCGTCAAAGAAAAGTCCTGTACATACAAGCAGCTATTTTGTTGGTCGAGATA 418
Query 747 TTCACAGTCACAAGGTTGCTTGGGGTCAGATATCAATGGTTGATGCAGAAAGAAGGCTAT 806
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TTCACAGTCACAAGGTTGCTTGGGGTCAGATATCCATGGTTGATGCAGAAAGAAGGCTAT 478
Query 807 TAGCTCATGCTCTCGTTGATCCTGATAATCAACACTTTATATTGCTGTCAGATAGTTGTG 866
|||||||||||||||||||||||||||||||||||||| | || || |||||||||||||
Sbjct 479 TAGCTCATGCTCTCGTTGATCCTGATAATCAACACTTTGTGTTACTTTCAGATAGTTGTG 538
Query 867 TACCGCTATTCGACTTTAACTATATCTATAACCACTTGATCTTCGCGAATCTCAGCTTCA 926
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 539 TACCGCTATTCGACTTTAACTATATCTATAATCACTTGATCTTCGCGAATCTCAGCTTCA 598
Query 927 TTGATTGTTTTGAGGATCCTGGACCACATGGATCTGGTAGGTATTCACAACATATGCTGC 986
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 TTGATTGTTTTGAGGATCCTGGACCACATGGATCTGGTCGGTATTCACAACATATGCTGC 658
Query 987 CTGAGGTTGAAAAGAAGGATTTTCGGAAGGGCTCACAGTGGTTTTCAATGAAGAGGAGAC 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGAGGTTGAAAAGAAGGATTTTCGGAAGGGCTCACAGTGGTTTTCAATGAAGAGGAGAC 718
Query 1047 ATGCTATAGTCGTCATGGCGGACAGCCTTTACTACACAAAATTCAAGCTTTACTGTAGGC 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 ATGCTATAGTCGTCATGGCGGACAGCCTTTACTACACAAAATTCAAGCTTTATTGTAGGC 778
Query 1107 CAAATATGGAAGGACGCAACTGCTATGCGGACGAGCATTATTTTCCAACTCTTTTCAATA 1166
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 CGAATATGGAAGGACGCAACTGCTATGCGGACGAGCATTATTTCCCAACTCTTTTCAATA 838
Query 1167 TGATTGATCCAGATGGAATAGCAAACTGGTCGGTCACACATGTAGATTGGTCCGAGGGCA 1226
||||||||||||||||||||||||||||||| || |||||||| |||||||| || ||||
Sbjct 839 TGATTGATCCAGATGGAATAGCAAACTGGTCAGTGACACATGTTGATTGGTCAGAAGGCA 898
Query 1227 AATGGCATCCGAAGCTGTACAATGCAAGAGACATCACTCCTTACCTCATCAGGAAAATCA 1286
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AATGGCATCCGAAACTGTACAATGCAAGAGACATCACTCCTTACCTCATCAGGAAAATCA 958
Query 1287 AGTCCATCCAACTTGCTTACCATGTCACAAGCGATTTAAAGAAAGTGACGACAGTAAAGC 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGTCCATCCAACTTGCTTACCATGTCACAAGCGATTTAAAGAAAGTGACGACAGTAAAGC 1018
Query 1347 CGTGTCTATGGAAAGGAGAGCAACGTCCATGTTACCTATTTGCTCGGAAGTTTAATCCTG 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CGTGTCTATGGAAAGGAGAGCAACGTCCATGTTACCTATTTGCTCGGAAGTTTAATCCTG 1078
Query 1407 AAACTCTAGACCGATTGATGTATCTCTTCCCTAACTACACCTCGCTGGTTTGA 1459
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAACTCTGGACCGATTGATGTATCTCTTCCCTAACTACACCTCGCTGGTTTGA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5