BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G31355.1

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926802 jgi|Araly1|926802|scaffold_202363.1                        121    1e-27


> Ahg926802 jgi|Araly1|926802|scaffold_202363.1
Length=217

 Score =  121 bits (65),  Expect = 1e-27
 Identities = 98/113 (87%), Gaps = 5/113 (4%)
 Strand=Plus/Minus

Query  14   AGTCT-CAGACTA-AGTTTGAAGCCGTGGGTACCATTTTCCGTGCACCAAACATAACCCA  71
            |||||  ||||||  |||| |||||||||||| |||||||| | ||||||||||||||||
Sbjct  215  AGTCTAAAGACTATTGTTTTAAGCCGTGGGTATCATTTTCCTTCCACCAAACATAACCCA  156

Query  72   ATCCAATCTTTTGTCTAAAGGATTGGTTACTTC-GAACCTCAAGTCTCTGTCT  123
            |||||||||||||||||||| |||||||  ||| ||| |||  ||||||||||
Sbjct  155  ATCCAATCTTTTGTCTAAAGAATTGGTTT-TTCCGAATCTCG-GTCTCTGTCT  105



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3974977032


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5