BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G31360.1

Length=980
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944847 jgi|Araly1|944847|scaffold_701076.1                        649    0.0  


> Ahg944847 jgi|Araly1|944847|scaffold_701076.1
Length=580

 Score =  649 bits (351),  Expect = 0.0
 Identities = 518/590 (88%), Gaps = 45/590 (8%)
 Strand=Plus/Plus

Query  86   CTGTTGCTGTCCGTACAATGCCGCCGAAGAAGAGTAAGGCAGATGGAGAAGAAAAGGCGA  145
            ||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||
Sbjct  4    CTGTTGCTGTCCGTATAATGGCGCCGAGGAAGAGTAAGGCAGATGGTGAAGAAAAGGCGA  63

Query  146  AACCTTTAACGACGTTGGCGTCGTCTAGAGTGACTCGGAGCATGGACAGTCGAACTCGAA  205
            ||||||||||||||  ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  64   AACCTTTAACGACGACGGCGTCGTCTACAGTGACTCGGAGCATGGGCAGTCGAACTCGAA  123

Query  206  GTCAGACTCAACAAAACGGTGCTAAAGCGGCTGGATCCGCCACTAAGCC------G---G  256
            |||||||||||||||||||||||||||||||||||||||||||||||||      |   |
Sbjct  124  GTCAGACTCAACAAAACGGTGCTAAAGCGGCTGGATCCGCCACTAAGCCGGTGAAGCTAG  183

Query  257  CG---ACGAAGAAGGCTAAGAGGAAGAATTCAGCGATTGAGACTGggagagccaagaagg  313
            ||    |||||||||| ||||||||||||||||||| |     |  ||||  |     ||
Sbjct  184  CGTCCCCGAAGAAGGCGAAGAGGAAGAATTCAGCGA-T-----T--GAGA--C----TGG  229

Query  314  gaaagaaggaagaggaagttgaagagccagaggaagccgttgaggaggaggttgagaagg  373
            |  || ||  | | ||||  ||| ||  | |||||   |||||  |  |||   || |||
Sbjct  230  G--AG-AGCCA-A-GAAG-GGAA-AG--A-AGGAA---GTTGA--A-AAGG--AAG-AGG  270

Query  374  aagagccagaggTTGAGGACCCTACGAGAACCAAGATTGTTATAGAACACTGTAAACAAT  433
            ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  271  AAGAGCCAGAGGTTGAGGATCCTACGAGAACGAAGATTGTTATAGAACACTGTAAACAAT  330

Query  434  GCAATGCTTTCAAGACAAGAGCTATTCAGGTGAAGGAAGCTTTGGAGGGAGCTGTTCCTG  493
            ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  331  GCAATGCTTTCAAGACAAGGGCTATTCAGGTGAAGGAAGGTTTGGAGGGAGCTGTTCCTG  390

Query  494  GCGTCACGGTGTCTCTTAATCCTGAAAAGCCAAGGCGGGGTTGCTTTGAGATCCGGGAGG  553
            ||||||  ||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  391  GCGTCAATGTGACTCTGAATCCTGAAAAGCCAAGGCGGGGTTGCTTCGAGATCCGGGAGG  450

Query  554  AAGGTGGCCAAACATTCATCAGTCTTTTGGAGATGAAACGTCCATTTGCACCAATGAAGG  613
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  451  AAGGTGGCGAAACATTCATCAGTCTTTTGGAGATGAAACGTCCATTTGCACCAATGAAGG  510

Query  614  CACTTGATATGGAAGAAGTCATCGAGGACATCATAAAGAAAGTCAAATGA  663
            ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  511  CACTTGATATGGAAGAAGTCATCGAGGACATCATAAAGAAAATCAAATGA  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36407385735


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5