BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31370.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491605 jgi|Araly1|491605|fgenesh2_kg.7__1038__AT4G31370.1 1580 0.0
> Ahg491605 jgi|Araly1|491605|fgenesh2_kg.7__1038__AT4G31370.1
Length=1026
Score = 1580 bits (855), Expect = 0.0
Identities = 980/1037 (95%), Gaps = 21/1037 (2%)
Strand=Plus/Plus
Query 5 ACACGAGATGGGTCTCAAAGCCTCCCTTTCTCTCCTCTCCCTCACCATCTTACTCGTCTT 64
|||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ACACAAGATGGGTCTCAATGCCTCCCTTTATCTCCTCTCCCTCACCATCTTACTCGTCTT 60
Query 65 CTCTAAGGTCGTTACGGCGAATAACATCACGCTGGCCTTTCAGAAATACTCCAAATTCAG 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTAAGGTCGTTACAGCGAATAACATCACGCTGGCCTTTCAGAAATACTCCAAATTCAG 120
Query 125 CACCATGAGGGACCTCTTCATCAAGACCAAGCTCATTGCAGCC-ATCGA-CAAATACCAG 182
|| |||||| |||| |||||||||||||||||||||| | || ||| | ||||||||||
Sbjct 121 CATCATGAGCAACCTTTTCATCAAGACCAAGCTCATTGTA-CCTATC-AGCAAATACCAG 178
Query 183 ACGATAACCGTGCTTGCTGTTAGCAATGACGCTATCAGCTCCATCACTAACAGATCCGAA 242
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 ACGATAACCGTGCTTGCTGTTAGCAATGACGCTATAAGCTCCATCACTAACAGATCCGAA 238
Query 243 GTTGAGCTCAGGAACATCCTCATGACTCATGTTATTCTTGACTACTACGATGAGCTTAAG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTTGAGCTCAGGAACATCCTCATGACTCATGTTATTCTTGACTACTACGATGAGCTTAAG 298
Query 303 CTTCAGGGGATGAGGGAGAAGAGTATAATGCTTACTACCTTATACCAAACCACCGGGTTG 362
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 299 CTTCAGGGGATGAGGGAGAAGAGTATAATGCTTACTACCTTATACCAGACCACCGGTTTG 358
Query 363 GGTGAACAGATGAATGGTTTCTTGAACGTTTCCAAATCAAAAGGAAGAGTTTACTTTGGA 422
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 GGTGAACAGATGAATGGTTTCTTGAACGTTTCCAAATCTGAAGGAAGAGTTTACTTTGGA 418
Query 423 TCGGAAGTGAAGAACTCTCCTTTAAACGCTGAGTATGTCTCGACGGTGTACCACAATCCA 482
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCGGAAGTGAAGAACTCACCTTTAAACGCTGAGTATGTCTCGACGGTGTACCACAATCCT 478
Query 483 TATAACCTCTCTATCATCCAGATTACCATGCCAATAGTGGCTCCTGGACTCAGCCTTGCA 542
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTAACCTCTCTATAATCCAGATCACCATGCCAATAGTGGCTCCTGGACTCAGCCTTGCA 538
Query 543 ATTTTCCCACCTCCACCACCATACGTTCATGTAGCTCCATATCCAACTCCCATGGATGCT 602
||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||
Sbjct 539 ATTTTCCCACCTCCACCACCACCCGTTCCTGTATCTCCATCTCCAACTCCCATGGATGCT 598
Query 603 TCAGTGGTTCCAGCTCCAGGACCAGCTGCTGATGACAATTCCCCAGATTCTGCTGTCCCA 662
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 TCAGTGGTTCCAGCTCCAGGACCAGCTGCTGATGACAATTCCTCAGATTCTGCTGTCCCA 658
Query 663 AAAACTCCACCTGCACCTGCAACAG-A-CACAC-CA--G-AGGCTGATTCTCCAGCTCCT 716
||||| ||||||||| ||||||||| | || || || | ||||||||||||||||||||
Sbjct 659 AAAACCCCACCTGCAACTGCAACAGCAACAGACACACCGGAGGCTGATTCTCCAGCTCCT 718
Query 717 GCTCCAAGCGCCGATAATGAGAAGATTGAAGCTGCTGATAAGGCTAAACCATCTTCTTCT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCTCCAAGCGCCGATAATGAGAAGATTGAAGCTGCTGATAAGGCTAAACCATCTTCTTCT 778
Query 777 GCTTCTAAGGCTGGTTGGAGCTTTGATGTTATTCTCTTGTTAGCATTTTTGGCTAGCTTT 836
|||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 779 GCTTCTAAGGCTGGTTCGAGCTTTGATGTCATTCTCTTGCTAGCATTTTTGGCTAGCTTT 838
Query 837 GCTGGGTTCTAAGATTCGGGTGATGTGGGTTAAAGACAATAATGGTAGGTGAGATTCAAA 896
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCTGGGTTCTAAGAT--GGGTGATGTGGGTTAAAGACAATAATGGTAGGTGAGATTCAAA 896
Query 897 ACAATTTTTCTGTAGCTTTT--AGCCAAGAAGAGAGACACGGCCATTGGAAGTGAAAGAA 954
|||||||||||||||||||| | | ||||||||||||||| ||||||||||||||| |
Sbjct 897 ACAATTTTTCTGTAGCTTTTTTAACTAAGAAGAGAGACACGACCATTGGAAGTGAAA-A- 954
Query 955 ACCTAAATGTAATGAGCTTTCTACTCATCATGCATTGTATTTATCAGCCATTTTGAATGC 1014
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 955 -CCTAAATGTGATGAGCTTTCTTCTCATCATGCATTGTATTTATCAGCCATTTTG----C 1009
Query 1015 AAATGTGATGTTTGTCC 1031
|||||||||||||||||
Sbjct 1010 AAATGTGATGTTTGTCC 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5