BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31380.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491604 jgi|Araly1|491604|fgenesh2_kg.7__1037__AT4G31380.1 979 0.0
> Ahg491604 jgi|Araly1|491604|fgenesh2_kg.7__1037__AT4G31380.1
Length=830
Score = 979 bits (530), Expect = 0.0
Identities = 768/873 (88%), Gaps = 56/873 (6%)
Strand=Plus/Plus
Query 1 CGAAAATTCTGGAATTCTGCATTTAatatatatatatata-tcatataatataATGATAA 59
|||||||||||||||||||||||||||||||||||||||| || |||||||| | |
Sbjct 1 CGAAAATTCTGGAATTCTGCATTTAATATATATATATATATTC--ATAATATACT--T-G 55
Query 60 TCTACTTGTCAGTCTACACACCCCTTTACCAACatatatatatatatata-GCACACA-C 117
|| | ||| ||||||||||||||||| |||||||||||||||||||| | | |
Sbjct 56 TC-A---GTC--TCTACACACCCCTTTACTAACATATATATATATATATATATATATATA 109
Query 118 TCTACA-CGGT-T-T---CCT-TATCCTCATC-AAAATTAACAAACTCATTTTTGAATAC 169
| || | | | | ||| | | ||| | |||||||||||||||||||||||| ||
Sbjct 110 TATATATATATATATAGCCCTCGA-CATCACCAAAAATTAACAAACTCATTTTTGAACAC 168
Query 170 CCaaaaaaaaaCCTAGCTAGCTCG-AAtttttttAAATATATAATAACATCAACAATGTC 228
||||||||||| |||||||||||| || | |||||| |||| |||||||||||||||
Sbjct 169 CCAAAAAAAAAACTAGCTAGCTCGTAA-AATCATAAATAGATAACAACATCAACAATGTC 227
Query 229 TGGTGTGTGGGTATTCAACAAAAACGGAGTCATGAGGCTGGTGGAGAATCCTTACAACCA 288
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TGGTGTGTGGGTGTTCAACAAAAACGGAGTCATGAGGCTGGTGGAGAATCCTTACAACCA 287
Query 289 ATCCGCCGGAGATTCGTCGGAATCGTCCTCTTCCGGTGGTAACCAGCAGCAGAGGATGAG 348
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 288 ATCCGCCGGAGATTCGTCGGAATCATCCTCTTCCGGTGGTAACCAGCAGCAGAGGATGAG 347
Query 349 GAGGAAAATTCTCGTCCATCTTCCAAGCAGCGAGGTTGTGTCTTCGTACGGATCACTTGA 408
|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 348 GAGGAAAATTCTCGTCCATCTTCCGACCAGCGAGGTTGTCTCTTCGTACGGATCACTTGA 407
Query 409 GAAGATCTTGAAGAATCTTGGGTGGGAGAGGTACTACAGTGGAGACAATACCGATCATCT 468
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 408 GAAGATCTTGAAGAATCTTGGGTGGGAGAGGTACTACAGTGGAGACAACACCGATCATCT 467
Query 469 GCTCCAGTTCCACAAGAGAACTTCGATCGATCTCATCTCTCTCCCTCGTGACTTCTCCAA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GCTCCAGTTCCACAAGAGAACTTCGATCGATCTCATCTCTCTCCCTCGTGACTTCTCCAA 527
Query 529 GTTTAACTCTATTCACATGTATGATATCGTCGTCAAGAACCCTAACGTCTTCCATGTCCG 588
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GTTTAACTCTATTCATATGTATGATATCGTCGTCAAGAACCCTAACGTCTTCCATGTCCG 587
Query 589 TGACATGTAGTAGTCAATCATCCAAAACAATGGTTCAATATCATTCTCCGATCATCGCCG 648
|||||||||||||| |||||||||||| | |||||||||||
Sbjct 588 AGACATGTAGTAGTCGATCATCCAAAAC-------C-------------GATCATCGCCG 627
Query 649 CTGGTGATATATCTATCATGTATATATATATGCAGgtttttattttgtcgttgggtgttt 708
| | ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 628 CAGATGATATATCTATCATGTATATATAT--GCAGGTTTTTACTTTGTCGTTGAGTGTTT 685
Query 709 ttgtttttggtttattttgtttttA-ATGCATTTAATGTACGTGTTTTCCGTTCGACGTC 767
||||| |||||||||||| || | |||||||||||||||||||||| || | |
Sbjct 686 TTGTTCTTGGTTTATTTTACTTC-ACATGCATTTAATGTACGTGTTTT--GT-CTT-G-- 738
Query 768 GATCGATTGGGGTGGGTTCAAGCTAGAGCCATTCTAATAACTTTTATCATTTTGTGATTT 827
| ||||||||||||||||||||||| ||| ||| ||||||||| ||| ||||||||||||
Sbjct 739 G-TCGATTGGGGTGGGTTCAAGCTATAGCAATTTTAATAACTTGTATTATTTTGTGATTT 797
Query 828 TAATGAAATTGTATCATGTTGTCAAGTTCTCTT 860
||||||||||||||||||||||||| |||||||
Sbjct 798 TAATGAAATTGTATCATGTTGTCAACTTCTCTT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5