BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G31390.1
Length=2445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491603 jgi|Araly1|491603|fgenesh2_kg.7__1036__AT4G31390.1 3620 0.0
> Ahg491603 jgi|Araly1|491603|fgenesh2_kg.7__1036__AT4G31390.1
Length=2322
Score = 3620 bits (1960), Expect = 0.0
Identities = 2087/2150 (97%), Gaps = 1/2150 (0%)
Strand=Plus/Plus
Query 51 CATGGAGTCAATCCACTGCAATAGTTTACTAAACCCTAATTTCTCCTTAAACCAGCGTCG 110
|||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 1 CATGGAGTCAATCCACTGCAATAGTTTAGTAACCCCTAATTTCTCCTTAAATCAGCGTCA 60
Query 111 TCGGAGGATTAATCACGCTGTTCTTAATCGGAGAGATGCTCTTTTGCGATCCCTCAACGC 170
|||||| || |||| |||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 61 TCGGAGAATAAATCGCGCTGTTCTTGATCGGAGAGATGCTCTTTTGCGATCTCTCAACGC 120
Query 171 CGTGGAGTTGCGGCGGAGCAGGACGTTCTCGGCTGTACGGACTTCTAATTTCTCAGTTAC 230
|||||||||||||||||| ||||| | ||||||||||||||| |||||||| ||||||||
Sbjct 121 CGTGGAGTTGCGGCGGAGAAGGACCTGCTCGGCTGTACGGACCTCTAATTTTTCAGTTAC 180
Query 231 TGCGGCGGCGACGGATGTTGGTGGTCGGAATTCGACGGATGCATCGGTAATGACAACGGC 290
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 TGCGGCGGCGACGGATGTTGGTGGTCGGAATTCGACGGATGCTTCGGTAATGACAACGGC 240
Query 291 GATGAGCGGGGTGGAGAGAGGTGTGCGAGTAGGGAAATCGAGCTCCGCGCTTGAGCAGCT 350
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 241 GATGAGCGGGGTGGAGAGAGGTATTCGAGTAGGGAAATCGAGCTCCGCGCTTGAGCAGCT 300
Query 351 AGATATTGAGCGAGGCGTTTGCGTTCCATTCCGAAAGTATTCTCCGGAGACTGTGAGGAG 410
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGATATCGAGCGAGGCGTTTGCGTTCCATTCCGAAAGTATTCTCCGGAGACTGTGAGGAG 360
Query 411 TAAAGTGCTGGAATCAAGAGGAGCAGTCGTGTCTCTAGTTTCAAGGGGTGTGGAGATTGT 470
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 361 TAAAGTGCTGGAATCAAGAGGAGCAGTCGTCTCTCTTGTTTCAAGGGGTGTGGAGATTGT 420
Query 471 TTGGACTCTTGGGTTGTATTGGTCTACCTTAACGTATGATTTTTTGGTTGGAAGGGATGA 530
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 421 TTGGACTCTTGGGTTGTATTGGTCTACCTTAATGTATGATTTTTTGGTTGGAAGGGACGA 480
Query 531 GGAAGTTGTCCCCTTTCGTGCTAGGCAGCTTAGGAACCTGTTGTGCAATTTGGGACCTTC 590
|||||||||||||||||||||| | |||||||||||||| |||||||| ||||| |||||
Sbjct 481 GGAAGTTGTCCCCTTTCGTGCTCGCCAGCTTAGGAACCTTTTGTGCAACTTGGGGCCTTC 540
Query 591 ATTTATCAAAGCTGGACAAGTTCTCGCAAATAGGCCTGATATCATCCGTGAAGACTACAT 650
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 541 ATTTATCAAAGCTGGACAAGTTCTGGCAAATAGGCCTGATATCATCCGTGAAGACTACAT 600
Query 651 GAACGAGCTCTGCATACTCCAAGATGATGTTCCTCCATTCCCAAACGAGGTTGCTTTCAA 710
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 GAACGAGCTCTGCATTCTCCAAGATGATGTTCCTCCATTCCCCAACGAGGTTGCTTTCAA 660
Query 711 TATCATCGAGGAAGAGTTAGGCCAACCTCTTGAGAACATATTTAGCAAGATTTCTTCACA 770
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 661 TATCATCGAGGAAGAGTTAGGCCAACCTCTTGAGGCCATATTTAGCAAGATTTCTTCAGA 720
Query 771 AACAATAGCAGCTGCAAGCTTAGGACAAGTTTATCGAGCTACTCTACGTGCCACTGGAGA 830
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 AACAATAGCAGCTGCAAGCTTGGGACAAGTTTATCGAGCTACTCTACGTGCCACTGGAGA 780
Query 831 GGATGTTGCTATCAAGGTGCAGAGACCACAAATAGAGCCTATAATTTACCGGGATCTCTT 890
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 GGATGTTGCTATCAAGGTGCAGAGACCACAAATAGAGCCCATAATTTACCGGGATCTCTT 840
Query 891 TCTTTTCCGAACCCTCGCCTCCTTCTTAAATGGCTTCAGTCTACAGAAACTGGGTTGCAA 950
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 841 TCTTTTCCGAACCCTCGCCTCATTCTTAAATGGCTTCAGTTTACAGAAACTGGGTTGCAA 900
Query 951 CGCAGAGCTAATAGTTGATGAATTTGGAGAAAAGCTTTTGGAGGAGCTTGACTACACCTT 1010
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 CGCAGAGCTAATAGTTGATGAATTTGGAGAAAAGCTTCTGGAGGAGCTTGACTACACCTT 960
Query 1011 GGAAGCCAGAAACATTGAAGACTTTCTGGAGAACTTCAAAGATGACCCCACAGTCAAAAT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGAAGCCAGAAACATTGAAGACTTTCTGGAGAACTTCAAAGATGACCCCACAGTCAAAAT 1020
Query 1071 TCCTGGAGTATACAAGAATCTTTGTGGTCCGCGGGTTCTGGTAATGGAGTGGATTGATGG 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCCTGGAGTATACAAGAATCTTTGTGGTCCGCGGGTTCTGGTAATGGAGTGGATTGATGG 1080
Query 1131 TATTCGGTGCACTGACCCACAGGCCATCAAGGATGCAGGGATTGATTTAAATGGATTCTT 1190
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1081 TATTCGGTGCACTGACCCACAGGCCATCAAGGATGCGGGGATTGATTTAAATGGATTCTT 1140
Query 1191 GACTGTTGGCGTAAGTGCTGCTCTAAGGCAGCTGTTGGAATTTGGATTGTTCCATGGAGA 1250
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1141 GACTGTTGGCGTAAGTGCTGCTTTAAGGCAGCTGTTAGAATTTGGATTGTTCCATGGAGA 1200
Query 1251 TCCACATCCTGGAAATATCTTTGCAATGCAAGATGGGCGTATCGCTTATGTGGACTTCGG 1310
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 TCCACATCCTGGAAATATCTTTGCAATGCAAGATGGGCGTATTGCTTATGTGGACTTCGG 1260
Query 1311 TAATGTTGCTGTACTGAGTCAGCAAAACAAGCAAATTTTGATTGATGCTGTTGTTCATGC 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TAATGTTGCTGTACTGAGTCAGCAAAACAAGCAAATTTTGATTGATGCTGTTGTTCATGC 1320
Query 1371 GGTTAATGAGGACTATGGGGAGATGGCAAATGATTTCACTAGGCTTGGGTTCTTGGCCAA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGTTAATGAGGACTATGGGGAGATGGCAAATGATTTCACTAGGCTTGGGTTCTTGGCCAA 1380
Query 1431 GGATACCGATGTTTCTCCTATCGTTCCAGCTTTAGAAGCCATCTGGCAGAACTCTGCAGG 1490
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GGATACTGATGTTTCTCCTATCGTTCCAGCTTTAGAAGCCATCTGGCAGAACTCTGCAGG 1440
Query 1491 GAAAGGACTTGCAGATTTCAATTTCCGAAGTGTTACAGGACAATTCAACAAGCTTGTGTA 1550
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1441 GAAAGGACTTGCAGATTTCAATTTCCGTAGTGTTACAGGCCAATTTAACAAGCTTGTGTA 1500
Query 1551 CGACTTTCCCATCCGTATCCCAGAGCGGTTCTCTCTTGTTATTCGTTCTCTGCTTACGCA 1610
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1501 CGACTTTCCCATCCGTATCCCGGAGCGGTTCTCTCTTGTTATTCGTTCTCTGCTTACTCA 1560
Query 1611 GGAGGGTATATGTTTCACACTGAAGCCTGATTTTAAATTTCTAGAGGTTGCTTATCCATA 1670
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GGAGGGTATATGTTTCACGCTGAAGCCTGATTTTAAATTTCTAGAGGTTGCTTATCCATA 1620
Query 1671 TGTAGCAAAACGGCTCCTAACGGATCCAAATCCTGCACTTCGGGAACGCTTGATACAGGT 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGTAGCAAAACGGCTCCTAACGGATCCAAATCCTGCACTTCGGGAACGCTTGATACAGGT 1680
Query 1731 TCTATTCAAAGATGGTGTTTTCCAATGGAAAAGGCTAGAAAACCTTTTATCACTTGCAAA 1790
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1681 TCTATTCAAAGATGGTGTTTTCCAATGGAAAAGGCTGGAAAACCTTTTATCACTTGCAAA 1740
Query 1791 GGAAAACGTCGCCAAGATGAGTAGCAATCCTAATCTACGAGTAAAGCGTGTGGAGAGTAA 1850
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1741 GGAAAACGTTGCCAAAATGAGTAGCAATCCTAATCTACGAGTTAAGCGTGTGGAGAGTAA 1800
Query 1851 GCTTGACTTGACAGATACCATTAAGGACGGAGCTCGTCTTTTCCTCCTTGACGAAGGCAT 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GCTTGACTTGACAGATACCATTAAGGACGGAGCTCGTCTTTTCCTCCTTGACGAAGGCAT 1860
Query 1911 CCGCAGGAAACTTATTCTTGCACTCACAGAGGACTCGAAGCTTCATGTAGAAGAGCTTGT 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 CCGCAGGAAACTTATTCTTGCACTCACAGAGGACTCGAAGCTTCATGTAGAAGAGCTTGT 1920
Query 1971 GGACGTATACAGATTGGTTGAAGACGAAGTAGATATTCCCACACTGGCCATGCAAGTCGT 2030
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1921 GGACGTATACAGATTGGTAGAAGACGAAGTAGATATTCCCACACTGGCCATGGAAGTCGT 1980
Query 2031 GCAAGATTTACCGAATGTTTTCCGAGATTTTGTGTTGTCATGGAGCAACTCAGTATTATC 2090
|| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1981 GCGAGATTTACCGAATGTTTTCCGAGATTTTGTGTTGTCATGGAGCAACTCGGTGTTATC 2040
Query 2091 CGACAGATGATGAATCAGCTTCTCACTTACtttttttGGCTCTTTTTGAAGAGGAAAGAG 2150
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 AGACAGATGATGAATCGGCTTCTCACTTACTTTTTTTGGCTCTTTTTGAAGAGGAAAGAG 2100
Query 2151 GTAATATATATTACAGGGAGTAGATGGAGAAGAAAAGCGTAGATTAATAT 2200
|||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2101 GTAA-ATATAGTACAGGGAGTAGATGGAGAAGAAAAGCGTAGATTAATAT 2149
Score = 159 bits (86), Expect = 7e-38
Identities = 106/115 (92%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 2318 TTGGACGTTGTCTACTGTAGTTGGATATCTAAACACATTAATCGACGTCATCAAATCAAA 2377
|||||||||||||| ||||||||||||||| || |||||| | |||||||||||||||||
Sbjct 2210 TTGGACGTTGTCTAATGTAGTTGGATATCT-AA-ACATTAGTGGACGTCATCAAATCAAA 2267
Query 2378 GTTGTAGTGTTCTCACAACACAAC--TGATTCACAATCTGGACTCGAATGAATTG 2430
| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2268 GCTGTAATGTTCTCACAACACAACACTGATTCACAATCTGGACTCGAATGAATTG 2322
Score = 76.8 bits (41), Expect = 7e-13
Identities = 46/48 (96%), Gaps = 1/48 (2%)
Strand=Plus/Plus
Query 2235 TTATACACCAATCCATACATGTAATTATATAAAA-GCACACACAAACT 2281
|||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2150 TTATACACCAATCCATACATGTAATTATATAAAAAGCGCACACAAACT 2197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92140302655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5